Expression of 1-1-4.2.8.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.089410.977
27DAP/17DAP1.044990.92
39DAP/27DAP0.967350.719
41DAP/39DAP1.058630.909
42DAP/41DAP1.259840.85
43DAP/42DAP1.191270.985
47DAP/43DAP1.017060.904
52DAP/47DAP0.929060.757
57DAP/52DAP1.158050.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.106560.587
17DAP/reference1.146520.04
27DAP/reference1.02230.831
39DAP/reference1.101720.277
41DAP/reference1.117360.062
42DAP/reference0.881510.017
43DAP/reference1.041680.758
47DAP/reference0.942280.174
52DAP/reference0.709840.033
57DAP/reference0.854370.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.038470.858
27DAP/17DAP1.121280.541
39DAP/27DAP0.988530.953
41DAP/39DAP0.923440.713
42DAP/41DAP1.12990.571
43DAP/42DAP1.231050.297
47DAP/43DAP1.021560.95
52DAP/47DAP0.880160.553
57DAP/52DAP0.945220.566
57DAP/7DAP1.060651

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.338150.076
17DAP/reference1.265840.102
27DAP/reference1.113810.551
39DAP/reference1.032230.745
41DAP/reference1.132250.593
42DAP/reference1.260350.308
43DAP/reference1.065670.307
47DAP/reference0.732870.079
52DAP/reference1.029511
57DAP/reference1.071580.851

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.249470.269
17DAP/reference1.038150.892
27DAP/reference0.934660.381
39DAP/reference0.905060.281
41DAP/reference0.989880.545
42DAP/reference0.818140.037
43DAP/reference1.081270.605
47DAP/reference1.048180.621
52DAP/reference1.020651
57DAP/reference1.200730.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.235160.158
17DAP/reference0.977780.668
27DAP/reference1.049190.749
39DAP/reference1.056730.528
41DAP/reference0.825070.077
42DAP/reference0.815090.108
43DAP/reference0.8530.165
47DAP/reference1.031961
52DAP/reference0.948580.582
57DAP/reference0.652220.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.055710.966
26DAP/20DAP1.00671
34DAP/26DAP1.218030.819
51DAP/34DAP0.969370.835
52DAP/51DAP0.929251
53DAP/52DAP1.113680.678
55DAP/53DAP1.061110.981
57DAP/55DAP1.206590.881
62DAP/57DAP1.188080.393
68DAP/62DAP1.062221
68DAP/14DAP0.639330.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.810330.108

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.79205
Mature Green Tomato/Ripe Tomato0.65084
Immature Eggplant/Mature Eggplant0.800910.594
Ripe Pepper/Ripe Tomato2.45325
Mature Eggplant/Ripe Tomato1.898490.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.70569
12-2/M82N/AN/A
12-4/M821.285471
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.26378
4-3/M82N/AN/A
5-3/M821.08313
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.58022
IL1-4/WTpooled1.25491
WT/WTpooled0.69681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.997151

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h0.81560.95
DC3000/delta hrp 12h1.031841
DC3000/delta hrp 24h1.13068

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.9063
DC3000 delta B/DC3000 delta AB0.911410.483

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.933751
Exp 36h0.725160.393
Exp 60h0.867330.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.991051
Var 0h1.101250.782
Var 12h I row2-row11.023240.654
Var 12h NI row2-row10.900280.488
Var 36h I row2-row10.967351
Var 36h NI row2-row10.941650.584
Var 60h I row2-row11.03630.562
Var 60h NI row2-row11.035140.904
Time course 0hI-0hNI1.01611
Time course 12hI-12hNI1.055560.593
Time course 36hI-36hNI0.913530.284
Time course 60hI-60hNI0.970670.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.123660.325
transgenic ySAMdc/azygous control (breaker)1.396190.248
transgenic ySAMdc/azygous control (red)1.10940.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.982630.517

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.129891

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.2340.088
Manapal/WT (break)1.010011
Manapal/WT (red)0.922130.503