Expression of 1-1-4.2.8.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08941 | 0.977 |
27DAP/17DAP | 1.04499 | 0.92 |
39DAP/27DAP | 0.96735 | 0.719 |
41DAP/39DAP | 1.05863 | 0.909 |
42DAP/41DAP | 1.25984 | 0.85 |
43DAP/42DAP | 1.19127 | 0.985 |
47DAP/43DAP | 1.01706 | 0.904 |
52DAP/47DAP | 0.92906 | 0.757 |
57DAP/52DAP | 1.15805 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10656 | 0.587 |
17DAP/reference | 1.14652 | 0.04 |
27DAP/reference | 1.0223 | 0.831 |
39DAP/reference | 1.10172 | 0.277 |
41DAP/reference | 1.11736 | 0.062 |
42DAP/reference | 0.88151 | 0.017 |
43DAP/reference | 1.04168 | 0.758 |
47DAP/reference | 0.94228 | 0.174 |
52DAP/reference | 0.70984 | 0.033 |
57DAP/reference | 0.85437 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03847 | 0.858 |
27DAP/17DAP | 1.12128 | 0.541 |
39DAP/27DAP | 0.98853 | 0.953 |
41DAP/39DAP | 0.92344 | 0.713 |
42DAP/41DAP | 1.1299 | 0.571 |
43DAP/42DAP | 1.23105 | 0.297 |
47DAP/43DAP | 1.02156 | 0.95 |
52DAP/47DAP | 0.88016 | 0.553 |
57DAP/52DAP | 0.94522 | 0.566 |
57DAP/7DAP | 1.06065 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33815 | 0.076 |
17DAP/reference | 1.26584 | 0.102 |
27DAP/reference | 1.11381 | 0.551 |
39DAP/reference | 1.03223 | 0.745 |
41DAP/reference | 1.13225 | 0.593 |
42DAP/reference | 1.26035 | 0.308 |
43DAP/reference | 1.06567 | 0.307 |
47DAP/reference | 0.73287 | 0.079 |
52DAP/reference | 1.02951 | 1 |
57DAP/reference | 1.07158 | 0.851 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24947 | 0.269 |
17DAP/reference | 1.03815 | 0.892 |
27DAP/reference | 0.93466 | 0.381 |
39DAP/reference | 0.90506 | 0.281 |
41DAP/reference | 0.98988 | 0.545 |
42DAP/reference | 0.81814 | 0.037 |
43DAP/reference | 1.08127 | 0.605 |
47DAP/reference | 1.04818 | 0.621 |
52DAP/reference | 1.02065 | 1 |
57DAP/reference | 1.20073 | 0.269 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23516 | 0.158 |
17DAP/reference | 0.97778 | 0.668 |
27DAP/reference | 1.04919 | 0.749 |
39DAP/reference | 1.05673 | 0.528 |
41DAP/reference | 0.82507 | 0.077 |
42DAP/reference | 0.81509 | 0.108 |
43DAP/reference | 0.853 | 0.165 |
47DAP/reference | 1.03196 | 1 |
52DAP/reference | 0.94858 | 0.582 |
57DAP/reference | 0.65222 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05571 | 0.966 |
26DAP/20DAP | 1.0067 | 1 |
34DAP/26DAP | 1.21803 | 0.819 |
51DAP/34DAP | 0.96937 | 0.835 |
52DAP/51DAP | 0.92925 | 1 |
53DAP/52DAP | 1.11368 | 0.678 |
55DAP/53DAP | 1.06111 | 0.981 |
57DAP/55DAP | 1.20659 | 0.881 |
62DAP/57DAP | 1.18808 | 0.393 |
68DAP/62DAP | 1.06222 | 1 |
68DAP/14DAP | 0.63933 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.81033 | 0.108 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.79205 | |
Mature Green Tomato/Ripe Tomato | 0.65084 | |
Immature Eggplant/Mature Eggplant | 0.80091 | 0.594 |
Ripe Pepper/Ripe Tomato | 2.45325 | |
Mature Eggplant/Ripe Tomato | 1.89849 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.70569 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.28547 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.26378 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.08313 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.58022 | |
IL1-4/WTpooled | 1.25491 | |
WT/WTpooled | 0.69681 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99715 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 0.8156 | 0.95 |
DC3000/delta hrp 12h | 1.03184 | 1 |
DC3000/delta hrp 24h | 1.13068 | |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.9063 | |
DC3000 delta B/DC3000 delta AB | 0.91141 | 0.483 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93375 | 1 |
Exp 36h | 0.72516 | 0.393 |
Exp 60h | 0.86733 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99105 | 1 |
Var 0h | 1.10125 | 0.782 |
Var 12h I row2-row1 | 1.02324 | 0.654 |
Var 12h NI row2-row1 | 0.90028 | 0.488 |
Var 36h I row2-row1 | 0.96735 | 1 |
Var 36h NI row2-row1 | 0.94165 | 0.584 |
Var 60h I row2-row1 | 1.0363 | 0.562 |
Var 60h NI row2-row1 | 1.03514 | 0.904 |
Time course 0hI-0hNI | 1.0161 | 1 |
Time course 12hI-12hNI | 1.05556 | 0.593 |
Time course 36hI-36hNI | 0.91353 | 0.284 |
Time course 60hI-60hNI | 0.97067 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.12366 | 0.325 |
transgenic ySAMdc/azygous control (breaker) | 1.39619 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.1094 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98263 | 0.517 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.12989 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.234 | 0.088 |
Manapal/WT (break) | 1.01001 | 1 |
Manapal/WT (red) | 0.92213 | 0.503 |
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