Expression of 1-1-4.2.9.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.916580.568
27DAP/17DAP0.989920.958
39DAP/27DAP0.884890.641
41DAP/39DAP0.921450.748
42DAP/41DAP0.853880.774
43DAP/42DAP0.941330.888
47DAP/43DAP1.474240.668
52DAP/47DAP1.119260.933
57DAP/52DAP1.328340.892

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.079710.735
17DAP/reference1.064840.108
27DAP/reference1.051910.548
39DAP/reference1.143050.091
41DAP/reference1.181950.019
42DAP/reference0.909720.067
43DAP/reference1.147660.061
47DAP/reference0.996620.568
52DAP/reference0.942430.35
57DAP/reference0.858410.033

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.926340.578
27DAP/17DAP1.151790.65
39DAP/27DAP0.755840.051
41DAP/39DAP1.202490.371
42DAP/41DAP0.720150.118
43DAP/42DAP1.188020.021
47DAP/43DAP1.855070.69
52DAP/47DAP1.137660.666
57DAP/52DAP1.117190.688
57DAP/7DAP2.045970.197

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.971760.495
17DAP/reference1.372530.014
27DAP/reference1.025190.748
39DAP/reference0.969440.474
41DAP/reference1.268730.083
42DAP/reference1.022470.686
43DAP/reference1.07160.603
47DAP/reference1.000491
52DAP/reference1.084040.781
57DAP/reference1.070970.799

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.292580.084
17DAP/reference1.139380.264
27DAP/reference1.153530.249
39DAP/reference1.008750.722
41DAP/reference0.89260.218
42DAP/reference0.899550.108
43DAP/reference1.221880.324
47DAP/reference0.871750.194
52DAP/reference1.122310.145
57DAP/reference1.258630.089

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.989360.699
17DAP/reference1.105950.398
27DAP/reference1.250890.092
39DAP/reference1.100590.451
41DAP/reference1.265010.03
42DAP/reference1.075390.481
43DAP/reference0.945560.523
47DAP/reference0.894910.191
52DAP/reference1.225270.335
57DAP/reference0.965640.5

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.072371
26DAP/20DAP1.019571
34DAP/26DAP0.942390.627
51DAP/34DAP1.454420.303
52DAP/51DAP0.778910.056
53DAP/52DAP1.027350.96
55DAP/53DAP0.944720.775
57DAP/55DAP1.296920.947
62DAP/57DAP0.890080.681
68DAP/62DAP0.761230.245
68DAP/14DAP0.779050.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.782960.239

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.001020.726
Mature Green Tomato/Ripe Tomato0.87270.446
Immature Eggplant/Mature Eggplant2.947660.058
Ripe Pepper/Ripe Tomato0.928840.224
Mature Eggplant/Ripe Tomato0.54611

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.99036
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.85046
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.15612
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.061041

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.999491
DC3000/delta hrp 6h1.1085
DC3000/delta hrp 12h0.988551
DC3000/delta hrp 24h1.156170.37

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.160421
Exp 36h1.524710.693
Exp 60h1.53150.22

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.05672
Var 0h0.85770.933
Var 12h I row2-row11.130140.348
Var 12h NI row2-row11.288040.649
Var 36h I row2-row11.226750.291
Var 36h NI row2-row10.869960.706
Var 60h I row2-row10.810480.285
Var 60h NI row2-row10.792350.572
Time course 0hI-0hNI1.162450.662
Time course 12hI-12hNI1.692720.005
Time course 36hI-36hNI1.834560.005
Time course 60hI-60hNI2.135860.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.135840.289
transgenic ySAMdc/azygous control (breaker)0.936790.251
transgenic ySAMdc/azygous control (red)0.95861

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007810.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.773580.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.958471
Manapal/WT (break)0.800850.333
Manapal/WT (red)1.120631