Expression of 1-1-4.2.9.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91658 | 0.568 |
27DAP/17DAP | 0.98992 | 0.958 |
39DAP/27DAP | 0.88489 | 0.641 |
41DAP/39DAP | 0.92145 | 0.748 |
42DAP/41DAP | 0.85388 | 0.774 |
43DAP/42DAP | 0.94133 | 0.888 |
47DAP/43DAP | 1.47424 | 0.668 |
52DAP/47DAP | 1.11926 | 0.933 |
57DAP/52DAP | 1.32834 | 0.892 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07971 | 0.735 |
17DAP/reference | 1.06484 | 0.108 |
27DAP/reference | 1.05191 | 0.548 |
39DAP/reference | 1.14305 | 0.091 |
41DAP/reference | 1.18195 | 0.019 |
42DAP/reference | 0.90972 | 0.067 |
43DAP/reference | 1.14766 | 0.061 |
47DAP/reference | 0.99662 | 0.568 |
52DAP/reference | 0.94243 | 0.35 |
57DAP/reference | 0.85841 | 0.033 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92634 | 0.578 |
27DAP/17DAP | 1.15179 | 0.65 |
39DAP/27DAP | 0.75584 | 0.051 |
41DAP/39DAP | 1.20249 | 0.371 |
42DAP/41DAP | 0.72015 | 0.118 |
43DAP/42DAP | 1.18802 | 0.021 |
47DAP/43DAP | 1.85507 | 0.69 |
52DAP/47DAP | 1.13766 | 0.666 |
57DAP/52DAP | 1.11719 | 0.688 |
57DAP/7DAP | 2.04597 | 0.197 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97176 | 0.495 |
17DAP/reference | 1.37253 | 0.014 |
27DAP/reference | 1.02519 | 0.748 |
39DAP/reference | 0.96944 | 0.474 |
41DAP/reference | 1.26873 | 0.083 |
42DAP/reference | 1.02247 | 0.686 |
43DAP/reference | 1.0716 | 0.603 |
47DAP/reference | 1.00049 | 1 |
52DAP/reference | 1.08404 | 0.781 |
57DAP/reference | 1.07097 | 0.799 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29258 | 0.084 |
17DAP/reference | 1.13938 | 0.264 |
27DAP/reference | 1.15353 | 0.249 |
39DAP/reference | 1.00875 | 0.722 |
41DAP/reference | 0.8926 | 0.218 |
42DAP/reference | 0.89955 | 0.108 |
43DAP/reference | 1.22188 | 0.324 |
47DAP/reference | 0.87175 | 0.194 |
52DAP/reference | 1.12231 | 0.145 |
57DAP/reference | 1.25863 | 0.089 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98936 | 0.699 |
17DAP/reference | 1.10595 | 0.398 |
27DAP/reference | 1.25089 | 0.092 |
39DAP/reference | 1.10059 | 0.451 |
41DAP/reference | 1.26501 | 0.03 |
42DAP/reference | 1.07539 | 0.481 |
43DAP/reference | 0.94556 | 0.523 |
47DAP/reference | 0.89491 | 0.191 |
52DAP/reference | 1.22527 | 0.335 |
57DAP/reference | 0.96564 | 0.5 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07237 | 1 |
26DAP/20DAP | 1.01957 | 1 |
34DAP/26DAP | 0.94239 | 0.627 |
51DAP/34DAP | 1.45442 | 0.303 |
52DAP/51DAP | 0.77891 | 0.056 |
53DAP/52DAP | 1.02735 | 0.96 |
55DAP/53DAP | 0.94472 | 0.775 |
57DAP/55DAP | 1.29692 | 0.947 |
62DAP/57DAP | 0.89008 | 0.681 |
68DAP/62DAP | 0.76123 | 0.245 |
68DAP/14DAP | 0.77905 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.78296 | 0.239 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.00102 | 0.726 |
Mature Green Tomato/Ripe Tomato | 0.8727 | 0.446 |
Immature Eggplant/Mature Eggplant | 2.94766 | 0.058 |
Ripe Pepper/Ripe Tomato | 0.92884 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.5461 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.99036 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.85046 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.15612 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06104 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99949 | 1 |
DC3000/delta hrp 6h | 1.1085 | |
DC3000/delta hrp 12h | 0.98855 | 1 |
DC3000/delta hrp 24h | 1.15617 | 0.37 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.16042 | 1 |
Exp 36h | 1.52471 | 0.693 |
Exp 60h | 1.5315 | 0.22 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05672 | |
Var 0h | 0.8577 | 0.933 |
Var 12h I row2-row1 | 1.13014 | 0.348 |
Var 12h NI row2-row1 | 1.28804 | 0.649 |
Var 36h I row2-row1 | 1.22675 | 0.291 |
Var 36h NI row2-row1 | 0.86996 | 0.706 |
Var 60h I row2-row1 | 0.81048 | 0.285 |
Var 60h NI row2-row1 | 0.79235 | 0.572 |
Time course 0hI-0hNI | 1.16245 | 0.662 |
Time course 12hI-12hNI | 1.69272 | 0.005 |
Time course 36hI-36hNI | 1.83456 | 0.005 |
Time course 60hI-60hNI | 2.13586 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13584 | 0.289 |
transgenic ySAMdc/azygous control (breaker) | 0.93679 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.9586 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00781 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77358 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95847 | 1 |
Manapal/WT (break) | 0.80085 | 0.333 |
Manapal/WT (red) | 1.12063 | 1 |
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