Expression of 1-1-4.2.9.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.597830.02
27DAP/17DAP0.866880.644
39DAP/27DAP1.606950.125
41DAP/39DAP0.796690.216
42DAP/41DAP1.655260.049
43DAP/42DAP1.007490.937
47DAP/43DAP0.908750.687
52DAP/47DAP0.8850.677
57DAP/52DAP0.890410.869

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.207520.071
17DAP/reference0.996370.904
27DAP/reference0.909240.304
39DAP/reference0.929550.475
41DAP/reference0.814620.026
42DAP/reference1.124450.015
43DAP/reference1.069810.233
47DAP/reference0.969640.3
52DAP/reference0.976450.504
57DAP/reference1.046310.662

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.852590.336
27DAP/17DAP1.079060.9
39DAP/27DAP1.13270.314
41DAP/39DAP1.382890.183
42DAP/41DAP0.955640.715
43DAP/42DAP0.954280.684
47DAP/43DAP1.241140.042
52DAP/47DAP0.81260.472
57DAP/52DAP0.859440.428
57DAP/7DAP1.236381

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.397710.033
17DAP/reference1.12020.244
27DAP/reference1.382160.014
39DAP/reference1.141860.077
41DAP/reference1.125830.09
42DAP/reference1.413890.012
43DAP/reference1.301280.009
47DAP/reference0.97160.671
52DAP/reference1.211490.014
57DAP/reference1.140860.214

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.107980.642
17DAP/reference0.936390.357
27DAP/reference1.121670.278
39DAP/reference1.099190.514
41DAP/reference1.015611
42DAP/reference1.097530.466
43DAP/reference1.157110.835
47DAP/reference1.179670.388
52DAP/reference0.993830.619
57DAP/reference1.063220.387

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.630020.015
17DAP/reference0.997680.825
27DAP/reference1.023220.672
39DAP/reference1.118440.189
41DAP/reference1.009441
42DAP/reference1.143970.134
43DAP/reference1.116640.259
47DAP/reference0.918290.199
52DAP/reference1.315430.19
57DAP/reference0.956360.372

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.880210.961
26DAP/20DAP1.007481
34DAP/26DAP0.84628
51DAP/34DAPN/AN/A
52DAP/51DAP1.013210.939
53DAP/52DAP1.293140.738
55DAP/53DAP0.985340.908
57DAP/55DAP1.102160.975
62DAP/57DAP1.31140.833
68DAP/62DAP1.233660.247
68DAP/14DAP1.315360.453

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.090940.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.280710.417
Mature Green Tomato/Ripe Tomato0.956010.569
Immature Eggplant/Mature Eggplant6.294490.05
Ripe Pepper/Ripe Tomato0.416960.224
Mature Eggplant/Ripe Tomato0.138370.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.23821
12-2/M820.7986
12-4/M821.490711
1-3/M82N/AN/A
2-1-1/M820.85416
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M822.773450.268
5-3/M820.610350.395
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.80937
7-2/M822.490440.324
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.988661
IL7-5/WTpooled1.10034
IL7-3/WTpooled0.979391
IL12-4/WTpooled0.870890.71
IL1-4/WTpooled1.130540.426
WT/WTpooled0.895151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.79540.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.122760.75
DC3000/delta hrp 6h1.239151
DC3000/delta hrp 12h1.317781
DC3000/delta hrp 24h0.851870.198

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.29422
DC3000 delta B/DC3000 delta AB2.153190.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.223551
Exp 36h1.982790.326
Exp 60h1.881140.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001521
Var 0h1.004881
Var 12h I row2-row11.053140.58
Var 12h NI row2-row11.369170.281
Var 36h I row2-row11.270690.305
Var 36h NI row2-row10.633870.378
Var 60h I row2-row10.995231
Var 60h NI row2-row10.649010.292
Time course 0hI-0hNI0.999521
Time course 12hI-12hNI1.73540.006
Time course 36hI-36hNI4.217770.004
Time course 60hI-60hNI12.58520.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.968930.485
transgenic ySAMdc/azygous control (breaker)0.902710.49
transgenic ySAMdc/azygous control (red)1.090010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.391940.061

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.303490.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.118920.14
Manapal/WT (break)0.924991
Manapal/WT (red)0.903810.607