Expression of 1-1-4.2.9.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.59783 | 0.02 |
27DAP/17DAP | 0.86688 | 0.644 |
39DAP/27DAP | 1.60695 | 0.125 |
41DAP/39DAP | 0.79669 | 0.216 |
42DAP/41DAP | 1.65526 | 0.049 |
43DAP/42DAP | 1.00749 | 0.937 |
47DAP/43DAP | 0.90875 | 0.687 |
52DAP/47DAP | 0.885 | 0.677 |
57DAP/52DAP | 0.89041 | 0.869 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20752 | 0.071 |
17DAP/reference | 0.99637 | 0.904 |
27DAP/reference | 0.90924 | 0.304 |
39DAP/reference | 0.92955 | 0.475 |
41DAP/reference | 0.81462 | 0.026 |
42DAP/reference | 1.12445 | 0.015 |
43DAP/reference | 1.06981 | 0.233 |
47DAP/reference | 0.96964 | 0.3 |
52DAP/reference | 0.97645 | 0.504 |
57DAP/reference | 1.04631 | 0.662 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85259 | 0.336 |
27DAP/17DAP | 1.07906 | 0.9 |
39DAP/27DAP | 1.1327 | 0.314 |
41DAP/39DAP | 1.38289 | 0.183 |
42DAP/41DAP | 0.95564 | 0.715 |
43DAP/42DAP | 0.95428 | 0.684 |
47DAP/43DAP | 1.24114 | 0.042 |
52DAP/47DAP | 0.8126 | 0.472 |
57DAP/52DAP | 0.85944 | 0.428 |
57DAP/7DAP | 1.23638 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39771 | 0.033 |
17DAP/reference | 1.1202 | 0.244 |
27DAP/reference | 1.38216 | 0.014 |
39DAP/reference | 1.14186 | 0.077 |
41DAP/reference | 1.12583 | 0.09 |
42DAP/reference | 1.41389 | 0.012 |
43DAP/reference | 1.30128 | 0.009 |
47DAP/reference | 0.9716 | 0.671 |
52DAP/reference | 1.21149 | 0.014 |
57DAP/reference | 1.14086 | 0.214 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10798 | 0.642 |
17DAP/reference | 0.93639 | 0.357 |
27DAP/reference | 1.12167 | 0.278 |
39DAP/reference | 1.09919 | 0.514 |
41DAP/reference | 1.01561 | 1 |
42DAP/reference | 1.09753 | 0.466 |
43DAP/reference | 1.15711 | 0.835 |
47DAP/reference | 1.17967 | 0.388 |
52DAP/reference | 0.99383 | 0.619 |
57DAP/reference | 1.06322 | 0.387 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.63002 | 0.015 |
17DAP/reference | 0.99768 | 0.825 |
27DAP/reference | 1.02322 | 0.672 |
39DAP/reference | 1.11844 | 0.189 |
41DAP/reference | 1.00944 | 1 |
42DAP/reference | 1.14397 | 0.134 |
43DAP/reference | 1.11664 | 0.259 |
47DAP/reference | 0.91829 | 0.199 |
52DAP/reference | 1.31543 | 0.19 |
57DAP/reference | 0.95636 | 0.372 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.88021 | 0.961 |
26DAP/20DAP | 1.00748 | 1 |
34DAP/26DAP | 0.84628 | |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 1.01321 | 0.939 |
53DAP/52DAP | 1.29314 | 0.738 |
55DAP/53DAP | 0.98534 | 0.908 |
57DAP/55DAP | 1.10216 | 0.975 |
62DAP/57DAP | 1.3114 | 0.833 |
68DAP/62DAP | 1.23366 | 0.247 |
68DAP/14DAP | 1.31536 | 0.453 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.09094 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.28071 | 0.417 |
Mature Green Tomato/Ripe Tomato | 0.95601 | 0.569 |
Immature Eggplant/Mature Eggplant | 6.29449 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.41696 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.13837 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.23821 | |
12-2/M82 | 0.7986 | |
12-4/M82 | 1.49071 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.85416 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 2.77345 | 0.268 |
5-3/M82 | 0.61035 | 0.395 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.80937 | |
7-2/M82 | 2.49044 | 0.324 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.98866 | 1 |
IL7-5/WTpooled | 1.10034 | |
IL7-3/WTpooled | 0.97939 | 1 |
IL12-4/WTpooled | 0.87089 | 0.71 |
IL1-4/WTpooled | 1.13054 | 0.426 |
WT/WTpooled | 0.89515 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.7954 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.12276 | 0.75 |
DC3000/delta hrp 6h | 1.23915 | 1 |
DC3000/delta hrp 12h | 1.31778 | 1 |
DC3000/delta hrp 24h | 0.85187 | 0.198 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.29422 | |
DC3000 delta B/DC3000 delta AB | 2.15319 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.22355 | 1 |
Exp 36h | 1.98279 | 0.326 |
Exp 60h | 1.88114 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00152 | 1 |
Var 0h | 1.00488 | 1 |
Var 12h I row2-row1 | 1.05314 | 0.58 |
Var 12h NI row2-row1 | 1.36917 | 0.281 |
Var 36h I row2-row1 | 1.27069 | 0.305 |
Var 36h NI row2-row1 | 0.63387 | 0.378 |
Var 60h I row2-row1 | 0.99523 | 1 |
Var 60h NI row2-row1 | 0.64901 | 0.292 |
Time course 0hI-0hNI | 0.99952 | 1 |
Time course 12hI-12hNI | 1.7354 | 0.006 |
Time course 36hI-36hNI | 4.21777 | 0.004 |
Time course 60hI-60hNI | 12.5852 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96893 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 0.90271 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.09001 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.39194 | 0.061 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.30349 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.11892 | 0.14 |
Manapal/WT (break) | 0.92499 | 1 |
Manapal/WT (red) | 0.90381 | 0.607 |
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