Expression of 1-1-4.3.1.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.92520.617
27DAP/17DAP1.410630.723
39DAP/27DAP1.211450.489
41DAP/39DAP0.745170.199
42DAP/41DAP0.892051
43DAP/42DAP0.850540.705
47DAP/43DAP1.243070.609
52DAP/47DAP1.17760.906
57DAP/52DAP1.098951

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.97870.539
17DAP/reference1.06090.21
27DAP/reference1.037470.498
39DAP/reference1.024340.445
41DAP/reference0.958710.542
42DAP/reference0.990710.398
43DAP/reference1.041950.547
47DAP/reference1.061860.105
52DAP/reference0.990840.618
57DAP/reference0.911080.176

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.055840.762
27DAP/17DAP0.834090.227
39DAP/27DAP0.976330.87
41DAP/39DAP1.164590.663
42DAP/41DAP0.781730.028
43DAP/42DAP0.941060.538
47DAP/43DAP1.119920.765
52DAP/47DAP0.860720.565
57DAP/52DAP1.158860.657
57DAP/7DAP1.234251

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.105570.444
17DAP/reference1.040380.627
27DAP/reference1.155250.073
39DAP/reference1.148590.133
41DAP/reference1.069450.524
42DAP/reference1.119480.534
43DAP/reference1.154110.344
47DAP/reference1.209090.102
52DAP/reference1.073510.684
57DAP/reference1.182020.125

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.030490.75
17DAP/reference0.92420.092
27DAP/reference0.961260.393
39DAP/reference1.10440.255
41DAP/reference0.916640.177
42DAP/reference0.901220.089
43DAP/reference0.968240.552
47DAP/reference0.904650.053
52DAP/reference1.003011
57DAP/reference1.032670.848

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.167270.296
17DAP/reference0.947050.488
27DAP/reference0.95730.286
39DAP/reference1.000070.889
41DAP/reference1.046591
42DAP/reference1.037050.907
43DAP/reference0.874630.076
47DAP/reference0.968560.335
52DAP/reference1.074940.77
57DAP/reference0.97680.475

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.998231
26DAP/20DAP1.022851
34DAP/26DAP1.109741
51DAP/34DAP0.83724
52DAP/51DAP0.591891
53DAP/52DAP1.220480.444
55DAP/53DAP0.933810.709
57DAP/55DAP0.850770.587
62DAP/57DAP1.279280.767
68DAP/62DAP1.125690.646
68DAP/14DAP1.459790.139

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.260490.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.907470.418
Mature Green Tomato/Ripe Tomato3.267420.044
Immature Eggplant/Mature Eggplant0.584270.176
Ripe Pepper/Ripe Tomato0.553150.293
Mature Eggplant/Ripe Tomato1.382611

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.31515
12-2/M821.18129
12-4/M821.04541
1-3/M820.86585
2-1-1/M821.07721
2-1/M82N/AN/A
2-6/M821.114310.695
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.762030.475
5-3/M821.156390.572
6-2/M820.5913
6-3/M820.98964
7-1/M82N/AN/A
7-2/M821.30073
9-3-2/M820.95148

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.69181
IL7-5/WTpooled1.223370.65
IL7-3/WTpooled0.996661
IL12-4/WTpooled1.235910.538
IL1-4/WTpooled1.292270.426
WT/WTpooled0.982331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.783610.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.016351
DC3000/delta hrp 12h1.068231
DC3000/delta hrp 24h0.870280.306

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.551580.032
DC3000 delta B/DC3000 delta AB0.332690.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.065671
Exp 36h1.071081
Exp 60h0.914560.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.959621
Var 0h0.96445
Var 12h I row2-row10.63120.357
Var 12h NI row2-row11.176671
Var 36h I row2-row10.838690.575
Var 36h NI row2-row11.441170.482
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row10.992071
Time course 0hI-0hNI0.998731
Time course 12hI-12hNI0.884520.324
Time course 36hI-36hNI0.782220.042
Time course 60hI-60hNI0.193880.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.857620.267
transgenic ySAMdc/azygous control (breaker)1.395510.178
transgenic ySAMdc/azygous control (red)1.003061

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.076450.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.898260.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.860870.172
Manapal/WT (break)1.190070.183
Manapal/WT (red)1.40790.15