Expression of 1-1-4.3.1.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9252 | 0.617 |
27DAP/17DAP | 1.41063 | 0.723 |
39DAP/27DAP | 1.21145 | 0.489 |
41DAP/39DAP | 0.74517 | 0.199 |
42DAP/41DAP | 0.89205 | 1 |
43DAP/42DAP | 0.85054 | 0.705 |
47DAP/43DAP | 1.24307 | 0.609 |
52DAP/47DAP | 1.1776 | 0.906 |
57DAP/52DAP | 1.09895 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9787 | 0.539 |
17DAP/reference | 1.0609 | 0.21 |
27DAP/reference | 1.03747 | 0.498 |
39DAP/reference | 1.02434 | 0.445 |
41DAP/reference | 0.95871 | 0.542 |
42DAP/reference | 0.99071 | 0.398 |
43DAP/reference | 1.04195 | 0.547 |
47DAP/reference | 1.06186 | 0.105 |
52DAP/reference | 0.99084 | 0.618 |
57DAP/reference | 0.91108 | 0.176 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05584 | 0.762 |
27DAP/17DAP | 0.83409 | 0.227 |
39DAP/27DAP | 0.97633 | 0.87 |
41DAP/39DAP | 1.16459 | 0.663 |
42DAP/41DAP | 0.78173 | 0.028 |
43DAP/42DAP | 0.94106 | 0.538 |
47DAP/43DAP | 1.11992 | 0.765 |
52DAP/47DAP | 0.86072 | 0.565 |
57DAP/52DAP | 1.15886 | 0.657 |
57DAP/7DAP | 1.23425 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10557 | 0.444 |
17DAP/reference | 1.04038 | 0.627 |
27DAP/reference | 1.15525 | 0.073 |
39DAP/reference | 1.14859 | 0.133 |
41DAP/reference | 1.06945 | 0.524 |
42DAP/reference | 1.11948 | 0.534 |
43DAP/reference | 1.15411 | 0.344 |
47DAP/reference | 1.20909 | 0.102 |
52DAP/reference | 1.07351 | 0.684 |
57DAP/reference | 1.18202 | 0.125 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03049 | 0.75 |
17DAP/reference | 0.9242 | 0.092 |
27DAP/reference | 0.96126 | 0.393 |
39DAP/reference | 1.1044 | 0.255 |
41DAP/reference | 0.91664 | 0.177 |
42DAP/reference | 0.90122 | 0.089 |
43DAP/reference | 0.96824 | 0.552 |
47DAP/reference | 0.90465 | 0.053 |
52DAP/reference | 1.00301 | 1 |
57DAP/reference | 1.03267 | 0.848 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16727 | 0.296 |
17DAP/reference | 0.94705 | 0.488 |
27DAP/reference | 0.9573 | 0.286 |
39DAP/reference | 1.00007 | 0.889 |
41DAP/reference | 1.04659 | 1 |
42DAP/reference | 1.03705 | 0.907 |
43DAP/reference | 0.87463 | 0.076 |
47DAP/reference | 0.96856 | 0.335 |
52DAP/reference | 1.07494 | 0.77 |
57DAP/reference | 0.9768 | 0.475 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99823 | 1 |
26DAP/20DAP | 1.02285 | 1 |
34DAP/26DAP | 1.10974 | 1 |
51DAP/34DAP | 0.83724 | |
52DAP/51DAP | 0.59189 | 1 |
53DAP/52DAP | 1.22048 | 0.444 |
55DAP/53DAP | 0.93381 | 0.709 |
57DAP/55DAP | 0.85077 | 0.587 |
62DAP/57DAP | 1.27928 | 0.767 |
68DAP/62DAP | 1.12569 | 0.646 |
68DAP/14DAP | 1.45979 | 0.139 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.26049 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.90747 | 0.418 |
Mature Green Tomato/Ripe Tomato | 3.26742 | 0.044 |
Immature Eggplant/Mature Eggplant | 0.58427 | 0.176 |
Ripe Pepper/Ripe Tomato | 0.55315 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.38261 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.31515 | |
12-2/M82 | 1.18129 | |
12-4/M82 | 1.04541 | |
1-3/M82 | 0.86585 | |
2-1-1/M82 | 1.07721 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.11431 | 0.695 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.76203 | 0.475 |
5-3/M82 | 1.15639 | 0.572 |
6-2/M82 | 0.5913 | |
6-3/M82 | 0.98964 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.30073 | |
9-3-2/M82 | 0.95148 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.6918 | 1 |
IL7-5/WTpooled | 1.22337 | 0.65 |
IL7-3/WTpooled | 0.99666 | 1 |
IL12-4/WTpooled | 1.23591 | 0.538 |
IL1-4/WTpooled | 1.29227 | 0.426 |
WT/WTpooled | 0.98233 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.78361 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 1.01635 | 1 |
DC3000/delta hrp 12h | 1.06823 | 1 |
DC3000/delta hrp 24h | 0.87028 | 0.306 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.55158 | 0.032 |
DC3000 delta B/DC3000 delta AB | 0.33269 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06567 | 1 |
Exp 36h | 1.07108 | 1 |
Exp 60h | 0.91456 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95962 | 1 |
Var 0h | 0.96445 | |
Var 12h I row2-row1 | 0.6312 | 0.357 |
Var 12h NI row2-row1 | 1.17667 | 1 |
Var 36h I row2-row1 | 0.83869 | 0.575 |
Var 36h NI row2-row1 | 1.44117 | 0.482 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 0.99207 | 1 |
Time course 0hI-0hNI | 0.99873 | 1 |
Time course 12hI-12hNI | 0.88452 | 0.324 |
Time course 36hI-36hNI | 0.78222 | 0.042 |
Time course 60hI-60hNI | 0.19388 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.85762 | 0.267 |
transgenic ySAMdc/azygous control (breaker) | 1.39551 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.00306 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.07645 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89826 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86087 | 0.172 |
Manapal/WT (break) | 1.19007 | 0.183 |
Manapal/WT (red) | 1.4079 | 0.15 |
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