Expression of 1-1-4.3.1.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87272 | 0.381 |
27DAP/17DAP | 0.86217 | 0.661 |
39DAP/27DAP | 1.08126 | 0.944 |
41DAP/39DAP | 1.27628 | 0.494 |
42DAP/41DAP | 1.05597 | 0.992 |
43DAP/42DAP | 0.82352 | 0.598 |
47DAP/43DAP | 1.10974 | 0.756 |
52DAP/47DAP | 1.6431 | 0.306 |
57DAP/52DAP | 0.89309 | 0.833 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07089 | 0.23 |
17DAP/reference | 0.98348 | 0.63 |
27DAP/reference | 0.92335 | 0.194 |
39DAP/reference | 1.03637 | 0.165 |
41DAP/reference | 0.9938 | 0.814 |
42DAP/reference | 1.1178 | 0.017 |
43DAP/reference | 1.00675 | 0.957 |
47DAP/reference | 0.99423 | 0.602 |
52DAP/reference | 1.06187 | 0.272 |
57DAP/reference | 0.86221 | 0.019 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01638 | 0.91 |
27DAP/17DAP | 1.01426 | 0.957 |
39DAP/27DAP | 1.0757 | 0.56 |
41DAP/39DAP | 1.01665 | 0.914 |
42DAP/41DAP | 1.03406 | 0.904 |
43DAP/42DAP | 1.04163 | 0.627 |
47DAP/43DAP | 1.07126 | 0.822 |
52DAP/47DAP | 0.96864 | 0.898 |
57DAP/52DAP | 0.95498 | 0.551 |
57DAP/7DAP | 1.08086 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96715 | 0.326 |
17DAP/reference | 0.90805 | 0.013 |
27DAP/reference | 0.90633 | 0.033 |
39DAP/reference | 0.94029 | 0.043 |
41DAP/reference | 0.93692 | 0.067 |
42DAP/reference | 0.94221 | 0.024 |
43DAP/reference | 0.93215 | 0.035 |
47DAP/reference | 0.97465 | 0.383 |
52DAP/reference | 1.00963 | 0.941 |
57DAP/reference | 0.92511 | 0.054 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11641 | 0.098 |
17DAP/reference | 1.10981 | 0.139 |
27DAP/reference | 1.1642 | 0.359 |
39DAP/reference | 0.98872 | 0.416 |
41DAP/reference | 1.0586 | 0.752 |
42DAP/reference | 1.02614 | 1 |
43DAP/reference | 1.22326 | 0.079 |
47DAP/reference | 0.95753 | 0.188 |
52DAP/reference | 1.10028 | 0.057 |
57DAP/reference | 1.36185 | 0.055 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95961 | 0.214 |
17DAP/reference | 1.0147 | 1 |
27DAP/reference | 0.88385 | 0.025 |
39DAP/reference | 0.87197 | 0.01 |
41DAP/reference | 0.92735 | 0.032 |
42DAP/reference | 0.94622 | 0.361 |
43DAP/reference | 0.9927 | 0.712 |
47DAP/reference | 0.97998 | 0.538 |
52DAP/reference | 0.88339 | 0.319 |
57DAP/reference | 0.85396 | 0.055 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08069 | 0.966 |
26DAP/20DAP | 1.03583 | 1 |
34DAP/26DAP | 0.97404 | 1 |
51DAP/34DAP | 0.87896 | 0.264 |
52DAP/51DAP | 0.98207 | 1 |
53DAP/52DAP | 1.0094 | 1 |
55DAP/53DAP | 1.131 | 0.599 |
57DAP/55DAP | 0.97653 | 0.88 |
62DAP/57DAP | 1.01137 | 1 |
68DAP/62DAP | 0.80604 | 0.109 |
68DAP/14DAP | 0.87386 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03169 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.56598 | 1 |
Mature Green Tomato/Ripe Tomato | 1.0635 | 1 |
Immature Eggplant/Mature Eggplant | 1.01664 | 0.633 |
Ripe Pepper/Ripe Tomato | 1.94256 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.10154 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02389 | 1 |
1-1-2/M82 | 0.95969 | 1 |
12-2/M82 | 1.15134 | 1 |
12-4/M82 | 0.94699 | 0.619 |
1-3/M82 | 0.9683 | 1 |
2-1-1/M82 | 0.98328 | 0.465 |
2-1/M82 | 0.67049 | |
2-6/M82 | 0.94341 | 0.501 |
3-2/M82 | 0.92989 | 1 |
4-1-1/M82 | 1.0349 | 1 |
4-1/M82 | 0.94967 | 1 |
4-3-2/M82 | 0.91802 | 1 |
4-3/M82 | 1.03912 | 1 |
5-3/M82 | 1.05276 | 1 |
6-2/M82 | 1.01931 | 1 |
6-3/M82 | 1.04927 | 1 |
7-1/M82 | 0.9155 | 0.509 |
7-2/M82 | 1.15827 | 0.385 |
9-3-2/M82 | 0.91476 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83796 | 0.243 |
IL2-6/WTpooled | 1.12074 | 0.46 |
IL7-5/WTpooled | 0.8031 | |
IL7-3/WTpooled | 0.91787 | 1 |
IL12-4/WTpooled | 1.08043 | 0.839 |
IL1-4/WTpooled | 0.99696 | 1 |
WT/WTpooled | 1.20226 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.13664 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.17678 | 0.503 |
DC3000/delta hrp 6h | 1.01024 | 1 |
DC3000/delta hrp 12h | 1.10696 | 1 |
DC3000/delta hrp 24h | 1.01291 | 0.821 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.86313 | 0.077 |
DC3000 delta B/DC3000 delta AB | 1.06541 | 0.468 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.007 | 1 |
Exp 36h | 0.90112 | 0.82 |
Exp 60h | 1.01316 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97247 | 1 |
Var 0h | 1.05874 | 0.936 |
Var 12h I row2-row1 | 1.10464 | 0.58 |
Var 12h NI row2-row1 | 1.05788 | 1 |
Var 36h I row2-row1 | 1.18793 | 1 |
Var 36h NI row2-row1 | 0.77429 | 0.478 |
Var 60h I row2-row1 | 1.11409 | 0.562 |
Var 60h NI row2-row1 | 0.99939 | 1 |
Time course 0hI-0hNI | 0.99461 | 1 |
Time course 12hI-12hNI | 1.00856 | 0.892 |
Time course 36hI-36hNI | 1.0582 | 0.513 |
Time course 60hI-60hNI | 1.23409 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92735 | 0.299 |
transgenic ySAMdc/azygous control (breaker) | 1.4717 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.14332 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.11019 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.16122 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89712 | 1 |
Manapal/WT (break) | 1.10198 | 1 |
Manapal/WT (red) | 1.0853 | 1 |
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