Expression of 1-1-4.3.1.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.085090.878
27DAP/17DAP0.97130.992
39DAP/27DAP1.459290.527
41DAP/39DAP0.784580.271
42DAP/41DAP1.06360.937
43DAP/42DAP0.901610.827
47DAP/43DAP1.081550.746
52DAP/47DAP1.018720.982
57DAP/52DAP1.009890.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.793440.01
17DAP/reference1.596940.014
27DAP/reference1.603270.008
39DAP/reference1.129170.294
41DAP/reference1.175880.133
42DAP/reference1.796550.001
43DAP/reference1.062080.471
47DAP/reference1.214440.007
52DAP/reference1.191370.335
57DAP/reference1.258170.355

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.620350.033
27DAP/17DAP0.937790.241
39DAP/27DAP1.008011
41DAP/39DAP1.031150.807
42DAP/41DAP0.91620.491
43DAP/42DAP0.854260.079
47DAP/43DAP0.934240.734
52DAP/47DAP0.936840.66
57DAP/52DAP0.953090.66
57DAP/7DAP0.758981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.088390.705
17DAP/reference0.944030.031
27DAP/reference0.922590.024
39DAP/reference0.991340.474
41DAP/reference0.987540.489
42DAP/reference0.972030.117
43DAP/reference0.928440.024
47DAP/reference1.072590.791
52DAP/reference0.919290.027
57DAP/reference0.949770.057

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.219290.117
17DAP/reference2.475860.009
27DAP/reference1.837040.015
39DAP/reference1.134260.686
41DAP/reference1.514170.021
42DAP/reference1.738760.008
43DAP/reference1.095290.526
47DAP/reference1.239530.017
52DAP/reference0.854330.086
57DAP/reference0.958510.433

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.230190.602
17DAP/reference1.349630.279
27DAP/reference1.044620.883
39DAP/reference0.990240.693
41DAP/reference1.071620.796
42DAP/reference1.170320.556
43DAP/reference1.200840.445
47DAP/reference1.110630.519
52DAP/reference0.946280.573
57DAP/reference1.509640.034

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.90131
26DAP/20DAP1.193020.481
34DAP/26DAP0.958090.777
51DAP/34DAP1.060160.785
52DAP/51DAP0.909671
53DAP/52DAP1.098030.688
55DAP/53DAP0.89810.577
57DAP/55DAP1.095071
62DAP/57DAP1.116191
68DAP/62DAP0.76970.668
68DAP/14DAP0.629380.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.3760.036

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.244050.063
Mature Green Tomato/Ripe Tomato1.336050.331
Immature Eggplant/Mature Eggplant0.339950.057
Ripe Pepper/Ripe Tomato3.392621
Mature Eggplant/Ripe Tomato5.143270.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.03231
1-1-2/M820.95445
12-2/M820.879350.727
12-4/M821.196911
1-3/M821.165680.248
2-1-1/M820.931170.565
2-1/M82N/AN/A
2-6/M821.121610.405
3-2/M821.47323
4-1-1/M821.128451
4-1/M821.139391
4-3-2/M820.963061
4-3/M821.136341
5-3/M821.091731
6-2/M821.04889
6-3/M821.094691
7-1/M82N/AN/A
7-2/M820.940890.881
9-3-2/M820.849580.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled13.24611
WT/WTpooled1.179831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.847080.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.045491
DC3000/delta hrp 12h1.998311
DC3000/delta hrp 24h0.983631

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.93890.765
DC3000 delta B/DC3000 delta AB0.937180.543

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.031071
Exp 36h0.777150.406
Exp 60h0.598310.253

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987111
Var 0h1.14470.374
Var 12h I row2-row10.953670.856
Var 12h NI row2-row11.063440.649
Var 36h I row2-row11.174060.742
Var 36h NI row2-row11.151131
Var 60h I row2-row10.92888
Var 60h NI row2-row11.000791
Time course 0hI-0hNI0.895780.127
Time course 12hI-12hNI0.920310.206
Time course 36hI-36hNI0.853180.175
Time course 60hI-60hNI0.679430.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.951790.454
transgenic ySAMdc/azygous control (breaker)0.855790.173
transgenic ySAMdc/azygous control (red)1.006181

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.803550.09

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.547450.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.772330.083
Manapal/WT (break)2.274190.183
Manapal/WT (red)1.534430.15