Expression of 1-1-4.3.10.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP3.193270.05
27DAP/17DAP1.729360.474
39DAP/27DAP1.115350.915
41DAP/39DAP1.019850.922
42DAP/41DAP0.760050.774
43DAP/42DAP0.880280.664
47DAP/43DAP0.550770.06
52DAP/47DAP1.254740.57
57DAP/52DAP1.162230.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.745630.044
17DAP/reference1.082890.457
27DAP/reference1.075070.52
39DAP/reference1.133660.318
41DAP/reference1.198540.085
42DAP/reference0.861930.111
43DAP/reference0.977460.691
47DAP/reference0.749070.008
52DAP/reference0.750620.046
57DAP/reference0.904090.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP3.19130.036
27DAP/17DAP1.018290.968
39DAP/27DAP1.120830.56
41DAP/39DAP1.342780.103
42DAP/41DAP0.924680.481
43DAP/42DAP0.520470.022
47DAP/43DAP0.835160.068
52DAP/47DAP1.206360.455
57DAP/52DAP1.133460.462
57DAP/7DAP1.883240.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.235590.385
17DAP/reference1.088330.399
27DAP/reference1.06470.974
39DAP/reference1.345840.166
41DAP/reference1.044551
42DAP/reference1.209940.889
43DAP/reference1.247690.344
47DAP/reference1.201170.235
52DAP/reference0.985640.523
57DAP/reference1.123670.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.030370.848
17DAP/reference1.061160.471
27DAP/reference1.041081
39DAP/reference0.928690.381
41DAP/reference0.927720.348
42DAP/reference1.043420.934
43DAP/reference1.147510.327
47DAP/reference1.202580.018
52DAP/reference1.186380.3
57DAP/reference1.151420.161

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.867730.048
17DAP/reference0.746380.221
27DAP/reference1.141930.392
39DAP/reference1.094410.365
41DAP/reference1.03970.826
42DAP/reference0.929070.552
43DAP/reference0.894830.348
47DAP/reference0.836220.109
52DAP/reference2.113380.499
57DAP/reference0.766990.097

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.254650.966
26DAP/20DAP1.322510.235
34DAP/26DAP1.066551
51DAP/34DAP1.323030.137
52DAP/51DAP0.878151
53DAP/52DAP0.77370.186
55DAP/53DAP0.833220.263
57DAP/55DAP0.885680.587
62DAP/57DAP1.117490.622
68DAP/62DAP0.851270.464
68DAP/14DAP0.799710.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.126750.439

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.590770.192
Mature Green Tomato/Ripe Tomato6.478370.016
Immature Eggplant/Mature Eggplant5.444840.045
Ripe Pepper/Ripe Tomato14.26110.258
Mature Eggplant/Ripe Tomato2.923070.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.96810.944
1-1-2/M821.005411
12-2/M820.98199
12-4/M821.114861
1-3/M820.94457
2-1-1/M821.05529
2-1/M820.80872
2-6/M821.027331
3-2/M82N/AN/A
4-1-1/M821.005911
4-1/M820.96667
4-3-2/M821.31457
4-3/M820.91540.611
5-3/M820.970571
6-2/M821.097051
6-3/M821.15782
7-1/M821.03152
7-2/M821.0795
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.951821
IL7-5/WTpooled1.27193
IL7-3/WTpooled0.957481
IL12-4/WTpooled0.978981
IL1-4/WTpooled1.180391
WT/WTpooled0.961941

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.042441

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.087880.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.285161
DC3000/delta hrp 24h0.930680.618

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.32573
DC3000 delta B/DC3000 delta AB1.63398

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.793821
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.007071
Var 0h1.003261
Var 12h I row2-row11.193770.272
Var 12h NI row2-row13.121771
Var 36h I row2-row11.272990.309
Var 36h NI row2-row11.208581
Var 60h I row2-row10.699850.306
Var 60h NI row2-row10.912070.977
Time course 0hI-0hNI1.116460.63
Time course 12hI-12hNI0.924410.382
Time course 36hI-36hNI1.193270.28
Time course 60hI-60hNI3.92970.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.945740.529
transgenic ySAMdc/azygous control (breaker)0.844130.49
transgenic ySAMdc/azygous control (red)1.155130.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.048120.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.205320.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.564240.333
Manapal/WT (red)1.493870.413