Expression of 1-1-4.3.11.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.997020.839
27DAP/17DAP1.040450.918
39DAP/27DAP1.737080.056
41DAP/39DAP0.946590.611
42DAP/41DAP1.000431
43DAP/42DAP1.189390.937
47DAP/43DAP0.889020.628
52DAP/47DAP0.833790.579
57DAP/52DAP1.145640.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.607960.041
17DAP/reference1.422091
27DAP/reference1.365660.034
39DAP/reference1.323230.318
41DAP/reference1.700430.022
42DAP/reference0.941680.182
43DAP/referenceN/AN/A
47DAP/reference1.036660.885
52DAP/reference1.800980.498
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.00240.871
27DAP/17DAP1.082490.658
39DAP/27DAP1.014070.824
41DAP/39DAP0.976550.91
42DAP/41DAP1.233720.007
43DAP/42DAP1.223170.015
47DAP/43DAP0.974370.855
52DAP/47DAP0.813650.207
57DAP/52DAP0.851280.264
57DAP/7DAP1.074361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.287770.057
17DAP/reference1.001360.693
27DAP/reference1.084140.246
39DAP/reference1.007461
41DAP/reference0.984190.565
42DAP/reference1.015041
43DAP/reference1.221210.015
47DAP/reference1.25650.152
52DAP/reference1.086250.636
57DAP/reference1.207960.198

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.20030.258
17DAP/reference1.323580.127
27DAP/reference1.228740.025
39DAP/reference0.915590.359
41DAP/reference0.97790.505
42DAP/reference0.951340.321
43DAP/reference1.183740.392
47DAP/reference0.985340.59
52DAP/reference0.755540.003
57DAP/reference0.779990.079

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.236560.05
17DAP/reference1.045260.876
27DAP/reference1.123020.1
39DAP/reference1.165610.034
41DAP/reference1.023670.889
42DAP/reference0.945850.671
43DAP/reference1.059030.667
47DAP/reference0.998250.687
52DAP/reference1.104730.623
57DAP/reference0.869740.366

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.959251
26DAP/20DAP1.687510.099
34DAP/26DAP0.863530.253
51DAP/34DAP1.51450.067
52DAP/51DAP0.769880.079
53DAP/52DAP1.008031
55DAP/53DAP0.937130.709
57DAP/55DAP1.153710.906
62DAP/57DAP0.639940.028
68DAP/62DAP1.080660.914
68DAP/14DAP0.966241

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.480110.068

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.658630.058
Mature Green Tomato/Ripe Tomato1.040220.69
Immature Eggplant/Mature Eggplant1.287880.05
Ripe Pepper/Ripe Tomato0.90651
Mature Eggplant/Ripe Tomato1.251770.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.095421
1-1-2/M821.017821
12-2/M820.829950.862
12-4/M821.127841
1-3/M821.384190.479
2-1-1/M820.957621
2-1/M820.502520.322
2-6/M820.912711
3-2/M821.060661
4-1-1/M821.102981
4-1/M821.012111
4-3-2/M821.252521
4-3/M821.096531
5-3/M821.152110.378
6-2/M821.70908
6-3/M820.957361
7-1/M821.02141
7-2/M821.148490.385
9-3-2/M821.559611

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.661220.383
IL7-5/WTpooled1.25655
IL7-3/WTpooled1.256271
IL12-4/WTpooled1.358170.673
IL1-4/WTpooled0.826360.435
WT/WTpooled0.908081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.988741

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.028380.921
DC3000/delta hrp 6h0.9750.95
DC3000/delta hrp 12h1.129711
DC3000/delta hrp 24h1.244140.077

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.05806
DC3000 delta B/DC3000 delta AB1.255440.226

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.251751
Exp 36h0.927660.879
Exp 60h1.126741

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.011921
Var 0h0.988451
Var 12h I row2-row10.926640.514
Var 12h NI row2-row11.05231
Var 36h I row2-row11.04511
Var 36h NI row2-row10.857210.522
Var 60h I row2-row10.865450.582
Var 60h NI row2-row10.814610.408
Time course 0hI-0hNI1.115470.63
Time course 12hI-12hNI0.980370.806
Time course 36hI-36hNI1.150080.01
Time course 60hI-60hNI1.714850.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.924550.299
transgenic ySAMdc/azygous control (breaker)0.770250.139
transgenic ySAMdc/azygous control (red)0.950441

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.936250.237

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.00021

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.809011
Manapal/WT (break)0.761150.299
Manapal/WT (red)0.643980.181