Expression of 1-1-4.3.11.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99702 | 0.839 |
27DAP/17DAP | 1.04045 | 0.918 |
39DAP/27DAP | 1.73708 | 0.056 |
41DAP/39DAP | 0.94659 | 0.611 |
42DAP/41DAP | 1.00043 | 1 |
43DAP/42DAP | 1.18939 | 0.937 |
47DAP/43DAP | 0.88902 | 0.628 |
52DAP/47DAP | 0.83379 | 0.579 |
57DAP/52DAP | 1.14564 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.60796 | 0.041 |
17DAP/reference | 1.42209 | 1 |
27DAP/reference | 1.36566 | 0.034 |
39DAP/reference | 1.32323 | 0.318 |
41DAP/reference | 1.70043 | 0.022 |
42DAP/reference | 0.94168 | 0.182 |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.03666 | 0.885 |
52DAP/reference | 1.80098 | 0.498 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0024 | 0.871 |
27DAP/17DAP | 1.08249 | 0.658 |
39DAP/27DAP | 1.01407 | 0.824 |
41DAP/39DAP | 0.97655 | 0.91 |
42DAP/41DAP | 1.23372 | 0.007 |
43DAP/42DAP | 1.22317 | 0.015 |
47DAP/43DAP | 0.97437 | 0.855 |
52DAP/47DAP | 0.81365 | 0.207 |
57DAP/52DAP | 0.85128 | 0.264 |
57DAP/7DAP | 1.07436 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28777 | 0.057 |
17DAP/reference | 1.00136 | 0.693 |
27DAP/reference | 1.08414 | 0.246 |
39DAP/reference | 1.00746 | 1 |
41DAP/reference | 0.98419 | 0.565 |
42DAP/reference | 1.01504 | 1 |
43DAP/reference | 1.22121 | 0.015 |
47DAP/reference | 1.2565 | 0.152 |
52DAP/reference | 1.08625 | 0.636 |
57DAP/reference | 1.20796 | 0.198 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2003 | 0.258 |
17DAP/reference | 1.32358 | 0.127 |
27DAP/reference | 1.22874 | 0.025 |
39DAP/reference | 0.91559 | 0.359 |
41DAP/reference | 0.9779 | 0.505 |
42DAP/reference | 0.95134 | 0.321 |
43DAP/reference | 1.18374 | 0.392 |
47DAP/reference | 0.98534 | 0.59 |
52DAP/reference | 0.75554 | 0.003 |
57DAP/reference | 0.77999 | 0.079 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23656 | 0.05 |
17DAP/reference | 1.04526 | 0.876 |
27DAP/reference | 1.12302 | 0.1 |
39DAP/reference | 1.16561 | 0.034 |
41DAP/reference | 1.02367 | 0.889 |
42DAP/reference | 0.94585 | 0.671 |
43DAP/reference | 1.05903 | 0.667 |
47DAP/reference | 0.99825 | 0.687 |
52DAP/reference | 1.10473 | 0.623 |
57DAP/reference | 0.86974 | 0.366 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95925 | 1 |
26DAP/20DAP | 1.68751 | 0.099 |
34DAP/26DAP | 0.86353 | 0.253 |
51DAP/34DAP | 1.5145 | 0.067 |
52DAP/51DAP | 0.76988 | 0.079 |
53DAP/52DAP | 1.00803 | 1 |
55DAP/53DAP | 0.93713 | 0.709 |
57DAP/55DAP | 1.15371 | 0.906 |
62DAP/57DAP | 0.63994 | 0.028 |
68DAP/62DAP | 1.08066 | 0.914 |
68DAP/14DAP | 0.96624 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.48011 | 0.068 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.65863 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.04022 | 0.69 |
Immature Eggplant/Mature Eggplant | 1.28788 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.9065 | 1 |
Mature Eggplant/Ripe Tomato | 1.25177 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09542 | 1 |
1-1-2/M82 | 1.01782 | 1 |
12-2/M82 | 0.82995 | 0.862 |
12-4/M82 | 1.12784 | 1 |
1-3/M82 | 1.38419 | 0.479 |
2-1-1/M82 | 0.95762 | 1 |
2-1/M82 | 0.50252 | 0.322 |
2-6/M82 | 0.91271 | 1 |
3-2/M82 | 1.06066 | 1 |
4-1-1/M82 | 1.10298 | 1 |
4-1/M82 | 1.01211 | 1 |
4-3-2/M82 | 1.25252 | 1 |
4-3/M82 | 1.09653 | 1 |
5-3/M82 | 1.15211 | 0.378 |
6-2/M82 | 1.70908 | |
6-3/M82 | 0.95736 | 1 |
7-1/M82 | 1.0214 | 1 |
7-2/M82 | 1.14849 | 0.385 |
9-3-2/M82 | 1.55961 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.66122 | 0.383 |
IL7-5/WTpooled | 1.25655 | |
IL7-3/WTpooled | 1.25627 | 1 |
IL12-4/WTpooled | 1.35817 | 0.673 |
IL1-4/WTpooled | 0.82636 | 0.435 |
WT/WTpooled | 0.90808 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98874 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02838 | 0.921 |
DC3000/delta hrp 6h | 0.975 | 0.95 |
DC3000/delta hrp 12h | 1.12971 | 1 |
DC3000/delta hrp 24h | 1.24414 | 0.077 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05806 | |
DC3000 delta B/DC3000 delta AB | 1.25544 | 0.226 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.25175 | 1 |
Exp 36h | 0.92766 | 0.879 |
Exp 60h | 1.12674 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01192 | 1 |
Var 0h | 0.98845 | 1 |
Var 12h I row2-row1 | 0.92664 | 0.514 |
Var 12h NI row2-row1 | 1.0523 | 1 |
Var 36h I row2-row1 | 1.0451 | 1 |
Var 36h NI row2-row1 | 0.85721 | 0.522 |
Var 60h I row2-row1 | 0.86545 | 0.582 |
Var 60h NI row2-row1 | 0.81461 | 0.408 |
Time course 0hI-0hNI | 1.11547 | 0.63 |
Time course 12hI-12hNI | 0.98037 | 0.806 |
Time course 36hI-36hNI | 1.15008 | 0.01 |
Time course 60hI-60hNI | 1.71485 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92455 | 0.299 |
transgenic ySAMdc/azygous control (breaker) | 0.77025 | 0.139 |
transgenic ySAMdc/azygous control (red) | 0.95044 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93625 | 0.237 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0002 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.80901 | 1 |
Manapal/WT (break) | 0.76115 | 0.299 |
Manapal/WT (red) | 0.64398 | 0.181 |
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