Expression of 1-1-4.3.11.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.141910.646
27DAP/17DAP0.896520.764
39DAP/27DAP1.045341
41DAP/39DAP1.131630.516
42DAP/41DAP0.956161
43DAP/42DAP1.015560.945
47DAP/43DAP1.174560.702
52DAP/47DAP1.113290.879
57DAP/52DAP1.018550.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.931470.371
17DAP/reference0.92880.321
27DAP/reference1.041850.759
39DAP/reference0.928250.234
41DAP/reference0.94080.085
42DAP/reference0.941880.211
43DAP/reference0.987070.763
47DAP/reference1.046910.524
52DAP/reference0.729450.102
57DAP/reference0.984590.61

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.083860.438
27DAP/17DAP0.996590.969
39DAP/27DAP1.07710.483
41DAP/39DAP1.058260.55
42DAP/41DAP0.93420.42
43DAP/42DAP1.072280.112
47DAP/43DAP0.956250.743
52DAP/47DAP0.955970.753
57DAP/52DAP0.982860.742
57DAP/7DAP0.954011

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.162460.079
17DAP/reference1.05580.123
27DAP/reference1.108350.015
39DAP/reference1.071530.033
41DAP/reference1.093490.09
42DAP/reference1.099350.018
43DAP/reference1.145240.083
47DAP/reference1.196330.259
52DAP/reference1.121950.092
57DAP/reference1.147260.049

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.003610.933
17DAP/reference1.009730.92
27DAP/reference0.905510.155
39DAP/reference0.873730.152
41DAP/reference0.864930.067
42DAP/reference0.947650.289
43DAP/reference1.063460.611
47DAP/reference1.076340.218
52DAP/reference0.959410.302
57DAP/reference1.096550.07

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.002481
17DAP/reference0.99160.778
27DAP/reference0.957180.073
39DAP/reference0.988830.544
41DAP/reference1.050520.411
42DAP/reference1.03150.701
43DAP/reference0.943490.305
47DAP/reference0.9970.708
52DAP/reference1.043120.649
57DAP/reference0.76210.024

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.041380.966
26DAP/20DAP0.985451
34DAP/26DAP1.025440.819
51DAP/34DAP0.959820.667
52DAP/51DAP0.970951
53DAP/52DAP1.122230.537
55DAP/53DAP1.010121
57DAP/55DAP1.060160.935
62DAP/57DAP0.948740.994
68DAP/62DAP0.923080.787
68DAP/14DAP1.248390.223

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.030170.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.95190.745
Mature Green Tomato/Ripe Tomato1.165060.523
Immature Eggplant/Mature Eggplant1.925670.05
Ripe Pepper/Ripe Tomato1.159451
Mature Eggplant/Ripe Tomato0.826641

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.992881
1-1-2/M821.118011
12-2/M820.952820.955
12-4/M820.983520.619
1-3/M820.998651
2-1-1/M821.016891
2-1/M820.962860.74
2-6/M820.96521
3-2/M821.014190.84
4-1-1/M820.862811
4-1/M820.999051
4-3-2/M821.037081
4-3/M820.937740.72
5-3/M820.981191
6-2/M821.03541
6-3/M821.027831
7-1/M821.08220.992
7-2/M820.912290.796
9-3-2/M821.010331

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.63267
IL7-3/WTpooled0.93456
IL12-4/WTpooled0.87471
IL1-4/WTpooled1.434691
WT/WTpooled0.986861

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.969050.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.102280.724
DC3000/delta hrp 6h1.097581
DC3000/delta hrp 12h0.912751
DC3000/delta hrp 24h1.008160.779

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.018470.515
DC3000 delta B/DC3000 delta AB1.08940.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.124531
Exp 36hN/AN/A
Exp 60h1.002751

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008441
Var 0h1.097611
Var 12h I row2-row11.063160.196
Var 12h NI row2-row10.933130.488
Var 36h I row2-row11.084861
Var 36h NI row2-row11.057061
Var 60h I row2-row10.973090.832
Var 60h NI row2-row11.081510.904
Time course 0hI-0hNI1.036840.662
Time course 12hI-12hNI1.010080.842
Time course 36hI-36hNI1.052650.58
Time course 60hI-60hNI0.93990.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.959630.485
transgenic ySAMdc/azygous control (breaker)0.744260.15
transgenic ySAMdc/azygous control (red)1.127550.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.998390.911

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.722370.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.676110.333
Manapal/WT (red)0.639950.181