Expression of 1-1-4.3.11.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14191 | 0.646 |
27DAP/17DAP | 0.89652 | 0.764 |
39DAP/27DAP | 1.04534 | 1 |
41DAP/39DAP | 1.13163 | 0.516 |
42DAP/41DAP | 0.95616 | 1 |
43DAP/42DAP | 1.01556 | 0.945 |
47DAP/43DAP | 1.17456 | 0.702 |
52DAP/47DAP | 1.11329 | 0.879 |
57DAP/52DAP | 1.01855 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93147 | 0.371 |
17DAP/reference | 0.9288 | 0.321 |
27DAP/reference | 1.04185 | 0.759 |
39DAP/reference | 0.92825 | 0.234 |
41DAP/reference | 0.9408 | 0.085 |
42DAP/reference | 0.94188 | 0.211 |
43DAP/reference | 0.98707 | 0.763 |
47DAP/reference | 1.04691 | 0.524 |
52DAP/reference | 0.72945 | 0.102 |
57DAP/reference | 0.98459 | 0.61 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08386 | 0.438 |
27DAP/17DAP | 0.99659 | 0.969 |
39DAP/27DAP | 1.0771 | 0.483 |
41DAP/39DAP | 1.05826 | 0.55 |
42DAP/41DAP | 0.9342 | 0.42 |
43DAP/42DAP | 1.07228 | 0.112 |
47DAP/43DAP | 0.95625 | 0.743 |
52DAP/47DAP | 0.95597 | 0.753 |
57DAP/52DAP | 0.98286 | 0.742 |
57DAP/7DAP | 0.95401 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16246 | 0.079 |
17DAP/reference | 1.0558 | 0.123 |
27DAP/reference | 1.10835 | 0.015 |
39DAP/reference | 1.07153 | 0.033 |
41DAP/reference | 1.09349 | 0.09 |
42DAP/reference | 1.09935 | 0.018 |
43DAP/reference | 1.14524 | 0.083 |
47DAP/reference | 1.19633 | 0.259 |
52DAP/reference | 1.12195 | 0.092 |
57DAP/reference | 1.14726 | 0.049 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00361 | 0.933 |
17DAP/reference | 1.00973 | 0.92 |
27DAP/reference | 0.90551 | 0.155 |
39DAP/reference | 0.87373 | 0.152 |
41DAP/reference | 0.86493 | 0.067 |
42DAP/reference | 0.94765 | 0.289 |
43DAP/reference | 1.06346 | 0.611 |
47DAP/reference | 1.07634 | 0.218 |
52DAP/reference | 0.95941 | 0.302 |
57DAP/reference | 1.09655 | 0.07 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00248 | 1 |
17DAP/reference | 0.9916 | 0.778 |
27DAP/reference | 0.95718 | 0.073 |
39DAP/reference | 0.98883 | 0.544 |
41DAP/reference | 1.05052 | 0.411 |
42DAP/reference | 1.0315 | 0.701 |
43DAP/reference | 0.94349 | 0.305 |
47DAP/reference | 0.997 | 0.708 |
52DAP/reference | 1.04312 | 0.649 |
57DAP/reference | 0.7621 | 0.024 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04138 | 0.966 |
26DAP/20DAP | 0.98545 | 1 |
34DAP/26DAP | 1.02544 | 0.819 |
51DAP/34DAP | 0.95982 | 0.667 |
52DAP/51DAP | 0.97095 | 1 |
53DAP/52DAP | 1.12223 | 0.537 |
55DAP/53DAP | 1.01012 | 1 |
57DAP/55DAP | 1.06016 | 0.935 |
62DAP/57DAP | 0.94874 | 0.994 |
68DAP/62DAP | 0.92308 | 0.787 |
68DAP/14DAP | 1.24839 | 0.223 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03017 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.9519 | 0.745 |
Mature Green Tomato/Ripe Tomato | 1.16506 | 0.523 |
Immature Eggplant/Mature Eggplant | 1.92567 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.15945 | 1 |
Mature Eggplant/Ripe Tomato | 0.82664 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99288 | 1 |
1-1-2/M82 | 1.11801 | 1 |
12-2/M82 | 0.95282 | 0.955 |
12-4/M82 | 0.98352 | 0.619 |
1-3/M82 | 0.99865 | 1 |
2-1-1/M82 | 1.01689 | 1 |
2-1/M82 | 0.96286 | 0.74 |
2-6/M82 | 0.9652 | 1 |
3-2/M82 | 1.01419 | 0.84 |
4-1-1/M82 | 0.86281 | 1 |
4-1/M82 | 0.99905 | 1 |
4-3-2/M82 | 1.03708 | 1 |
4-3/M82 | 0.93774 | 0.72 |
5-3/M82 | 0.98119 | 1 |
6-2/M82 | 1.0354 | 1 |
6-3/M82 | 1.02783 | 1 |
7-1/M82 | 1.0822 | 0.992 |
7-2/M82 | 0.91229 | 0.796 |
9-3-2/M82 | 1.01033 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.63267 | |
IL7-3/WTpooled | 0.93456 | |
IL12-4/WTpooled | 0.8747 | 1 |
IL1-4/WTpooled | 1.43469 | 1 |
WT/WTpooled | 0.98686 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96905 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10228 | 0.724 |
DC3000/delta hrp 6h | 1.09758 | 1 |
DC3000/delta hrp 12h | 0.91275 | 1 |
DC3000/delta hrp 24h | 1.00816 | 0.779 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.01847 | 0.515 |
DC3000 delta B/DC3000 delta AB | 1.0894 | 0.381 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12453 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.00275 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00844 | 1 |
Var 0h | 1.09761 | 1 |
Var 12h I row2-row1 | 1.06316 | 0.196 |
Var 12h NI row2-row1 | 0.93313 | 0.488 |
Var 36h I row2-row1 | 1.08486 | 1 |
Var 36h NI row2-row1 | 1.05706 | 1 |
Var 60h I row2-row1 | 0.97309 | 0.832 |
Var 60h NI row2-row1 | 1.08151 | 0.904 |
Time course 0hI-0hNI | 1.03684 | 0.662 |
Time course 12hI-12hNI | 1.01008 | 0.842 |
Time course 36hI-36hNI | 1.05265 | 0.58 |
Time course 60hI-60hNI | 0.9399 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95963 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 0.74426 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.12755 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99839 | 0.911 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.72237 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.67611 | 0.333 |
Manapal/WT (red) | 0.63995 | 0.181 |
|
|