Expression of 1-1-4.3.11.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.695280.178
27DAP/17DAP1.001751
39DAP/27DAP1.351340.8
41DAP/39DAP0.756290.207
42DAP/41DAP0.527630.397
43DAP/42DAP0.874220.799
47DAP/43DAP0.898310.64
52DAP/47DAP0.730010.382
57DAP/52DAP1.052790.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.108670.29
17DAP/reference1.05230.22
27DAP/reference0.985520.668
39DAP/reference0.992810.855
41DAP/reference1.038860.808
42DAP/reference0.888180.034
43DAP/reference1.004151
47DAP/reference0.949910.3
52DAP/reference0.857350.091
57DAP/reference0.773440.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.807630.153
27DAP/17DAP1.169310.576
39DAP/27DAP1.336430.422
41DAP/39DAP1.355940.135
42DAP/41DAP1.008340.925
43DAP/42DAP0.558970.022
47DAP/43DAP1.3720.025
52DAP/47DAP0.975990.905
57DAP/52DAP1.201320.217
57DAP/7DAP0.772551

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.525990.056
17DAP/reference1.377550.013
27DAP/reference1.453160.041
39DAP/reference1.190050.436
41DAP/reference1.228420.131
42DAP/reference1.297890.1
43DAP/reference1.354970.039
47DAP/reference1.144980.901
52DAP/reference1.046710.941
57DAP/reference1.215380.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.218530.051
17DAP/reference1.210180.092
27DAP/reference1.135520.217
39DAP/reference1.133650.263
41DAP/reference1.050371
42DAP/reference0.9630.355
43DAP/reference1.049860.919
47DAP/reference0.919250.27
52DAP/reference1.076990.528
57DAP/reference1.333930.119

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.55980.029
17DAP/reference1.012260.839
27DAP/reference1.349440.143
39DAP/reference1.456380.007
41DAP/reference1.068060.754
42DAP/reference1.133480.556
43DAP/reference0.965010.384
47DAP/reference1.014880.667
52DAP/reference1.192880.341
57DAP/reference0.730020.043

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.943081
26DAP/20DAP1.269010.629
34DAP/26DAP0.909520.509
51DAP/34DAP1.102050.627
52DAP/51DAP0.897141
53DAP/52DAP1.170020.517
55DAP/53DAP0.927940.604
57DAP/55DAP0.906590.694
62DAP/57DAP1.057360.935
68DAP/62DAP0.967720.885
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.793010.037

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato7.180930.185
Immature Eggplant/Mature Eggplant2.257290.05
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.268170.456
IL7-5/WTpooled1.28740.75
IL7-3/WTpooled0.416480.294
IL12-4/WTpooled0.958411
IL1-4/WTpooled0.735450.457
WT/WTpooled0.999141

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.103830.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.17361
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.459281
DC3000/delta hrp 24h9.434330.024

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.529820.042
DC3000 delta B/DC3000 delta AB1.566150.078

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.023531
Var 0h0.39860.332
Var 12h I row2-row11.416880.324
Var 12h NI row2-row11.099390.34
Var 36h I row2-row10.986681
Var 36h NI row2-row11.428871
Var 60h I row2-row10.863910.582
Var 60h NI row2-row11.017471
Time course 0hI-0hNI0.943040.548
Time course 12hI-12hNI1.107360.403
Time course 36hI-36hNI1.180720.128
Time course 60hI-60hNI2.51960.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.856960.314
transgenic ySAMdc/azygous control (breaker)0.950451
transgenic ySAMdc/azygous control (red)0.871821

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.98010.371

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.993861

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.5981
Manapal/WT (break)0.859451
Manapal/WT (red)0.856170.199