Expression of 1-1-4.3.11.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.69528 | 0.178 |
27DAP/17DAP | 1.00175 | 1 |
39DAP/27DAP | 1.35134 | 0.8 |
41DAP/39DAP | 0.75629 | 0.207 |
42DAP/41DAP | 0.52763 | 0.397 |
43DAP/42DAP | 0.87422 | 0.799 |
47DAP/43DAP | 0.89831 | 0.64 |
52DAP/47DAP | 0.73001 | 0.382 |
57DAP/52DAP | 1.05279 | 0.988 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10867 | 0.29 |
17DAP/reference | 1.0523 | 0.22 |
27DAP/reference | 0.98552 | 0.668 |
39DAP/reference | 0.99281 | 0.855 |
41DAP/reference | 1.03886 | 0.808 |
42DAP/reference | 0.88818 | 0.034 |
43DAP/reference | 1.00415 | 1 |
47DAP/reference | 0.94991 | 0.3 |
52DAP/reference | 0.85735 | 0.091 |
57DAP/reference | 0.77344 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80763 | 0.153 |
27DAP/17DAP | 1.16931 | 0.576 |
39DAP/27DAP | 1.33643 | 0.422 |
41DAP/39DAP | 1.35594 | 0.135 |
42DAP/41DAP | 1.00834 | 0.925 |
43DAP/42DAP | 0.55897 | 0.022 |
47DAP/43DAP | 1.372 | 0.025 |
52DAP/47DAP | 0.97599 | 0.905 |
57DAP/52DAP | 1.20132 | 0.217 |
57DAP/7DAP | 0.77255 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52599 | 0.056 |
17DAP/reference | 1.37755 | 0.013 |
27DAP/reference | 1.45316 | 0.041 |
39DAP/reference | 1.19005 | 0.436 |
41DAP/reference | 1.22842 | 0.131 |
42DAP/reference | 1.29789 | 0.1 |
43DAP/reference | 1.35497 | 0.039 |
47DAP/reference | 1.14498 | 0.901 |
52DAP/reference | 1.04671 | 0.941 |
57DAP/reference | 1.21538 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21853 | 0.051 |
17DAP/reference | 1.21018 | 0.092 |
27DAP/reference | 1.13552 | 0.217 |
39DAP/reference | 1.13365 | 0.263 |
41DAP/reference | 1.05037 | 1 |
42DAP/reference | 0.963 | 0.355 |
43DAP/reference | 1.04986 | 0.919 |
47DAP/reference | 0.91925 | 0.27 |
52DAP/reference | 1.07699 | 0.528 |
57DAP/reference | 1.33393 | 0.119 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.5598 | 0.029 |
17DAP/reference | 1.01226 | 0.839 |
27DAP/reference | 1.34944 | 0.143 |
39DAP/reference | 1.45638 | 0.007 |
41DAP/reference | 1.06806 | 0.754 |
42DAP/reference | 1.13348 | 0.556 |
43DAP/reference | 0.96501 | 0.384 |
47DAP/reference | 1.01488 | 0.667 |
52DAP/reference | 1.19288 | 0.341 |
57DAP/reference | 0.73002 | 0.043 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94308 | 1 |
26DAP/20DAP | 1.26901 | 0.629 |
34DAP/26DAP | 0.90952 | 0.509 |
51DAP/34DAP | 1.10205 | 0.627 |
52DAP/51DAP | 0.89714 | 1 |
53DAP/52DAP | 1.17002 | 0.517 |
55DAP/53DAP | 0.92794 | 0.604 |
57DAP/55DAP | 0.90659 | 0.694 |
62DAP/57DAP | 1.05736 | 0.935 |
68DAP/62DAP | 0.96772 | 0.885 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.79301 | 0.037 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 7.18093 | 0.185 |
Immature Eggplant/Mature Eggplant | 2.25729 | 0.05 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.26817 | 0.456 |
IL7-5/WTpooled | 1.2874 | 0.75 |
IL7-3/WTpooled | 0.41648 | 0.294 |
IL12-4/WTpooled | 0.95841 | 1 |
IL1-4/WTpooled | 0.73545 | 0.457 |
WT/WTpooled | 0.99914 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.10383 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.17361 | |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.45928 | 1 |
DC3000/delta hrp 24h | 9.43433 | 0.024 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.52982 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.56615 | 0.078 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02353 | 1 |
Var 0h | 0.3986 | 0.332 |
Var 12h I row2-row1 | 1.41688 | 0.324 |
Var 12h NI row2-row1 | 1.09939 | 0.34 |
Var 36h I row2-row1 | 0.98668 | 1 |
Var 36h NI row2-row1 | 1.42887 | 1 |
Var 60h I row2-row1 | 0.86391 | 0.582 |
Var 60h NI row2-row1 | 1.01747 | 1 |
Time course 0hI-0hNI | 0.94304 | 0.548 |
Time course 12hI-12hNI | 1.10736 | 0.403 |
Time course 36hI-36hNI | 1.18072 | 0.128 |
Time course 60hI-60hNI | 2.5196 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.85696 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 0.95045 | 1 |
transgenic ySAMdc/azygous control (red) | 0.87182 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9801 | 0.371 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99386 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.598 | 1 |
Manapal/WT (break) | 0.85945 | 1 |
Manapal/WT (red) | 0.85617 | 0.199 |
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