Expression of 1-1-4.3.12.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.68088 | 0.105 |
27DAP/17DAP | 1.61692 | 0.362 |
39DAP/27DAP | 0.87364 | 0.573 |
41DAP/39DAP | 1.03893 | 0.772 |
42DAP/41DAP | 1.68071 | 0.681 |
43DAP/42DAP | 1.00307 | 0.937 |
47DAP/43DAP | 0.95653 | 0.835 |
52DAP/47DAP | 1.24629 | 0.545 |
57DAP/52DAP | 0.86052 | 0.687 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20408 | 0.062 |
17DAP/reference | 0.9926 | 0.858 |
27DAP/reference | 1.03262 | 0.415 |
39DAP/reference | 0.97332 | 0.587 |
41DAP/reference | 0.9995 | 1 |
42DAP/reference | 1.85235 | 0.001 |
43DAP/reference | 1.05076 | 0.382 |
47DAP/reference | 0.9874 | 0.392 |
52DAP/reference | 1.06231 | 0.286 |
57DAP/reference | 0.97711 | 0.435 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92997 | 0.644 |
27DAP/17DAP | 0.93499 | 0.195 |
39DAP/27DAP | 0.91133 | 0.149 |
41DAP/39DAP | 1.08898 | 0.427 |
42DAP/41DAP | 0.95056 | 0.625 |
43DAP/42DAP | 1.03244 | 1 |
47DAP/43DAP | 0.9804 | 0.909 |
52DAP/47DAP | 1.20453 | 0.395 |
57DAP/52DAP | 1.71379 | 0.039 |
57DAP/7DAP | 1.11429 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91829 | 0.095 |
17DAP/reference | 0.95934 | 0.028 |
27DAP/reference | 0.8955 | 0.013 |
39DAP/reference | 0.92085 | 0.021 |
41DAP/reference | 0.91477 | 0.038 |
42DAP/reference | 0.97399 | 0.304 |
43DAP/reference | 1.217 | 0.06 |
47DAP/reference | 0.8952 | 0.293 |
52DAP/reference | 0.84076 | 0.026 |
57DAP/reference | 1.20065 | 0.053 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22306 | 0.16 |
17DAP/reference | 1.44697 | 0.014 |
27DAP/reference | 1.22017 | 0.052 |
39DAP/reference | 1.30131 | 0.16 |
41DAP/reference | 1.85292 | 0.005 |
42DAP/reference | 1.18958 | 0.148 |
43DAP/reference | 1.40445 | 0.173 |
47DAP/reference | 1.29837 | 0.039 |
52DAP/reference | 1.20399 | 0.026 |
57DAP/reference | 1.31446 | 0.017 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88815 | 0.04 |
17DAP/reference | 1.05756 | 0.511 |
27DAP/reference | 0.99074 | 0.691 |
39DAP/reference | 0.99703 | 0.819 |
41DAP/reference | 0.91628 | 0.03 |
42DAP/reference | 1.17445 | 0.347 |
43DAP/reference | 1.36614 | 0.042 |
47DAP/reference | 1.20323 | 0.104 |
52DAP/reference | 1.10532 | 0.749 |
57DAP/reference | 2.39169 | 0.013 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97342 | 1 |
26DAP/20DAP | 1.08322 | 0.615 |
34DAP/26DAP | 1.03069 | 1 |
51DAP/34DAP | 0.86698 | 0.084 |
52DAP/51DAP | 1.08981 | 0.439 |
53DAP/52DAP | 0.9488 | 0.75 |
55DAP/53DAP | 0.95674 | 0.698 |
57DAP/55DAP | 0.92589 | 0.606 |
62DAP/57DAP | 0.99464 | 0.994 |
68DAP/62DAP | 0.81702 | 0.406 |
68DAP/14DAP | 1.03123 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89994 | 0.175 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.88714 | 0.401 |
Mature Green Tomato/Ripe Tomato | 0.72896 | 0.148 |
Immature Eggplant/Mature Eggplant | 1.00219 | 1 |
Ripe Pepper/Ripe Tomato | 0.22945 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.46568 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00158 | 1 |
1-1-2/M82 | 0.84843 | 1 |
12-2/M82 | 1.10602 | 1 |
12-4/M82 | 0.84629 | 1 |
1-3/M82 | 0.725 | 0.501 |
2-1-1/M82 | 1.02092 | |
2-1/M82 | 0.94492 | |
2-6/M82 | 1.06704 | 0.505 |
3-2/M82 | 0.9982 | 1 |
4-1-1/M82 | 0.99709 | 1 |
4-1/M82 | 0.85775 | 1 |
4-3-2/M82 | 0.92331 | 0.698 |
4-3/M82 | 0.74157 | 0.578 |
5-3/M82 | 0.8795 | 0.49 |
6-2/M82 | 0.96913 | 1 |
6-3/M82 | 0.93305 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.06977 | 1 |
9-3-2/M82 | 0.7687 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06419 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93051 | 0.941 |
DC3000/delta hrp 6h | 1.09583 | 1 |
DC3000/delta hrp 12h | 1.04017 | 1 |
DC3000/delta hrp 24h | 1.10865 | 0.347 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.64248 | 0.035 |
DC3000 delta B/DC3000 delta AB | 0.59909 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.01854 | 1 |
Exp 36h | 0.72035 | 0.456 |
Exp 60h | 1.03266 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99581 | 1 |
Var 0h | 1.36793 | 0.782 |
Var 12h I row2-row1 | 0.7838 | 0.338 |
Var 12h NI row2-row1 | 0.98893 | 1 |
Var 36h I row2-row1 | 0.78755 | 0.805 |
Var 36h NI row2-row1 | 1.08098 | 1 |
Var 60h I row2-row1 | 1.32674 | 0.562 |
Var 60h NI row2-row1 | 1.05891 | 0.904 |
Time course 0hI-0hNI | 0.99735 | 1 |
Time course 12hI-12hNI | 1.04586 | 0.672 |
Time course 36hI-36hNI | 1.02813 | 0.453 |
Time course 60hI-60hNI | 0.24192 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.4074 | 0.541 |
transgenic ySAMdc/azygous control (breaker) | 0.4979 | 0.139 |
transgenic ySAMdc/azygous control (red) | 1.29778 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01433 | 0.619 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.30008 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.74067 | 1 |
Manapal/WT (break) | 0.68721 | 1 |
Manapal/WT (red) | 0.95455 | 0.863 |
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