Expression of 1-1-4.3.12.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.680880.105
27DAP/17DAP1.616920.362
39DAP/27DAP0.873640.573
41DAP/39DAP1.038930.772
42DAP/41DAP1.680710.681
43DAP/42DAP1.003070.937
47DAP/43DAP0.956530.835
52DAP/47DAP1.246290.545
57DAP/52DAP0.860520.687

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.204080.062
17DAP/reference0.99260.858
27DAP/reference1.032620.415
39DAP/reference0.973320.587
41DAP/reference0.99951
42DAP/reference1.852350.001
43DAP/reference1.050760.382
47DAP/reference0.98740.392
52DAP/reference1.062310.286
57DAP/reference0.977110.435

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.929970.644
27DAP/17DAP0.934990.195
39DAP/27DAP0.911330.149
41DAP/39DAP1.088980.427
42DAP/41DAP0.950560.625
43DAP/42DAP1.032441
47DAP/43DAP0.98040.909
52DAP/47DAP1.204530.395
57DAP/52DAP1.713790.039
57DAP/7DAP1.114291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.918290.095
17DAP/reference0.959340.028
27DAP/reference0.89550.013
39DAP/reference0.920850.021
41DAP/reference0.914770.038
42DAP/reference0.973990.304
43DAP/reference1.2170.06
47DAP/reference0.89520.293
52DAP/reference0.840760.026
57DAP/reference1.200650.053

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.223060.16
17DAP/reference1.446970.014
27DAP/reference1.220170.052
39DAP/reference1.301310.16
41DAP/reference1.852920.005
42DAP/reference1.189580.148
43DAP/reference1.404450.173
47DAP/reference1.298370.039
52DAP/reference1.203990.026
57DAP/reference1.314460.017

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.888150.04
17DAP/reference1.057560.511
27DAP/reference0.990740.691
39DAP/reference0.997030.819
41DAP/reference0.916280.03
42DAP/reference1.174450.347
43DAP/reference1.366140.042
47DAP/reference1.203230.104
52DAP/reference1.105320.749
57DAP/reference2.391690.013

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.973421
26DAP/20DAP1.083220.615
34DAP/26DAP1.030691
51DAP/34DAP0.866980.084
52DAP/51DAP1.089810.439
53DAP/52DAP0.94880.75
55DAP/53DAP0.956740.698
57DAP/55DAP0.925890.606
62DAP/57DAP0.994640.994
68DAP/62DAP0.817020.406
68DAP/14DAP1.031231

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.899940.175

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.887140.401
Mature Green Tomato/Ripe Tomato0.728960.148
Immature Eggplant/Mature Eggplant1.002191
Ripe Pepper/Ripe Tomato0.229450.224
Mature Eggplant/Ripe Tomato0.465680.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.001581
1-1-2/M820.848431
12-2/M821.106021
12-4/M820.846291
1-3/M820.7250.501
2-1-1/M821.02092
2-1/M820.94492
2-6/M821.067040.505
3-2/M820.99821
4-1-1/M820.997091
4-1/M820.857751
4-3-2/M820.923310.698
4-3/M820.741570.578
5-3/M820.87950.49
6-2/M820.969131
6-3/M820.933051
7-1/M82N/AN/A
7-2/M821.069771
9-3-2/M820.76870.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.064191

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.930510.941
DC3000/delta hrp 6h1.095831
DC3000/delta hrp 12h1.040171
DC3000/delta hrp 24h1.108650.347

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.642480.035
DC3000 delta B/DC3000 delta AB0.599090.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.018541
Exp 36h0.720350.456
Exp 60h1.032661

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995811
Var 0h1.367930.782
Var 12h I row2-row10.78380.338
Var 12h NI row2-row10.988931
Var 36h I row2-row10.787550.805
Var 36h NI row2-row11.080981
Var 60h I row2-row11.326740.562
Var 60h NI row2-row11.058910.904
Time course 0hI-0hNI0.997351
Time course 12hI-12hNI1.045860.672
Time course 36hI-36hNI1.028130.453
Time course 60hI-60hNI0.241920.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.40740.541
transgenic ySAMdc/azygous control (breaker)0.49790.139
transgenic ySAMdc/azygous control (red)1.297780.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.014330.619

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.300080.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.740671
Manapal/WT (break)0.687211
Manapal/WT (red)0.954550.863