Expression of 1-1-4.3.12.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.114440.838
27DAP/17DAP1.036470.905
39DAP/27DAP1.39190.635
41DAP/39DAP1.334360.212
42DAP/41DAP2.23370.021
43DAP/42DAP1.026230.937
47DAP/43DAP1.12840.513
52DAP/47DAP0.669340.147
57DAP/52DAP0.842540.727

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.640740.013
17DAP/reference1.197220.239
27DAP/reference0.964730.581
39DAP/reference1.201290.286
41DAP/reference1.070250.624
42DAP/reference1.55580.001
43DAP/reference1.336080.011
47DAP/reference1.012880.764
52DAP/reference0.76450.013
57DAP/reference0.999760.805

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.952440.578
27DAP/17DAP0.907880.58
39DAP/27DAP1.186450.143
41DAP/39DAP0.906450.599
42DAP/41DAP1.121080.514
43DAP/42DAP1.198340.122
47DAP/43DAP1.034150.848
52DAP/47DAP1.170040.494
57DAP/52DAP1.174570.303
57DAP/7DAP1.118471

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01311
17DAP/reference1.10980.199
27DAP/reference1.017550.664
39DAP/reference0.980840.552
41DAP/reference0.879380.107
42DAP/reference0.81510.018
43DAP/reference0.887590.079
47DAP/reference1.096140.837
52DAP/reference0.914470.163
57DAP/reference0.958270.302

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.305210.304
17DAP/reference1.623680.007
27DAP/reference1.3070.06
39DAP/reference1.155950.106
41DAP/reference1.316240.008
42DAP/reference1.382130.013
43DAP/reference1.260210.462
47DAP/reference1.466860.008
52DAP/reference0.953110.28
57DAP/reference1.108060.409

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.933190.268
17DAP/reference1.015721
27DAP/reference1.025380.749
39DAP/reference0.867830.083
41DAP/reference1.004720.826
42DAP/reference1.134920.566
43DAP/reference1.264740.396
47DAP/reference1.119050.61
52DAP/reference1.1440.306
57DAP/reference1.171120.078

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.227010.966
26DAP/20DAP0.883990.512
34DAP/26DAP1.396180.304
51DAP/34DAP1.377450.177
52DAP/51DAP0.981331
53DAP/52DAP0.884510.226
55DAP/53DAP1.158360.511
57DAP/55DAP1.144571
62DAP/57DAP1.215230.303
68DAP/62DAP0.97990.787
68DAP/14DAP1.28240.469

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.661840.037

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.567550.122
Mature Green Tomato/Ripe Tomato0.619410.017
Immature Eggplant/Mature Eggplant0.847110.1
Ripe Pepper/Ripe Tomato2.062550.258
Mature Eggplant/Ripe Tomato1.149350.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.066761
1-1-2/M821.588751
12-2/M820.90480.955
12-4/M821.627431
1-3/M821.249130.479
2-1-1/M821.213860.764
2-1/M820.767330.74
2-6/M821.351110.594
3-2/M821.61195
4-1-1/M820.860941
4-1/M821.350821
4-3-2/M822.351410.508
4-3/M823.912581
5-3/M820.933710.642
6-2/M821.285351
6-3/M820.881171
7-1/M820.96036
7-2/M821.126231
9-3-2/M821.697191

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.94365
IL2-6/WTpooled0.898731
IL7-5/WTpooled1.0763
IL7-3/WTpooled0.935631
IL12-4/WTpooled1.014311
IL1-4/WTpooled1.044111
WT/WTpooled0.976121

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.098320.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.032840.921
DC3000/delta hrp 6h1.008210.95
DC3000/delta hrp 12h1.228851
DC3000/delta hrp 24h0.518580.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.121170.06
DC3000 delta B/DC3000 delta AB1.172760.311

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.845530.328
Exp 36h0.756480.456
Exp 60h0.528360.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.068111
Var 0h2.807170.98
Var 12h I row2-row10.874490.627
Var 12h NI row2-row10.935050.713
Var 36h I row2-row10.970821
Var 36h NI row2-row11.848591
Var 60h I row2-row10.946710.832
Var 60h NI row2-row10.966951
Time course 0hI-0hNI1.007461
Time course 12hI-12hNI0.98840.964
Time course 36hI-36hNI1.061560.355
Time course 60hI-60hNI0.950420.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.97450.306
transgenic ySAMdc/azygous control (breaker)1.313620.178
transgenic ySAMdc/azygous control (red)1.239390.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.987580.673

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.966870.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.202380.105
Manapal/WT (break)0.863121
Manapal/WT (red)0.944530.607