Expression of 1-1-4.3.12.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04982 | 0.838 |
27DAP/17DAP | 1.25677 | 0.841 |
39DAP/27DAP | 1.14212 | 0.779 |
41DAP/39DAP | 0.98245 | 0.873 |
42DAP/41DAP | 1.19944 | 0.877 |
43DAP/42DAP | 1.01517 | 1 |
47DAP/43DAP | 1.31237 | 0.442 |
52DAP/47DAP | 0.78253 | 0.357 |
57DAP/52DAP | 1.22435 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13348 | 0.179 |
17DAP/reference | 1.00882 | 0.565 |
27DAP/reference | 1.00635 | 0.925 |
39DAP/reference | 1.02203 | 0.326 |
41DAP/reference | 1.03844 | 0.393 |
42DAP/reference | 1.06713 | 0.018 |
43DAP/reference | 1.01138 | 0.928 |
47DAP/reference | 1.07856 | 0.008 |
52DAP/reference | 1.16635 | 0.083 |
57DAP/reference | 1.04355 | 0.433 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.34085 | 0.334 |
27DAP/17DAP | 1.03167 | 1 |
39DAP/27DAP | 0.81232 | |
41DAP/39DAP | N/A | N/A |
42DAP/41DAP | 0.93378 | 0.679 |
43DAP/42DAP | 1.01686 | 0.83 |
47DAP/43DAP | 1.42456 | 0.581 |
52DAP/47DAP | 0.63953 | 0.112 |
57DAP/52DAP | 0.95664 | 0.813 |
57DAP/7DAP | 1.05953 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05243 | 0.452 |
17DAP/reference | 1.07363 | 0.028 |
27DAP/reference | 1.17732 | 0.01 |
39DAP/reference | 1.03282 | 0.538 |
41DAP/reference | 1.05239 | 0.303 |
42DAP/reference | 1.02572 | 0.534 |
43DAP/reference | 0.93982 | 0.066 |
47DAP/reference | 0.97588 | 0.293 |
52DAP/reference | 0.88051 | 0.077 |
57DAP/reference | 0.98754 | 0.549 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23763 | 0.038 |
17DAP/reference | 1.14511 | 0.019 |
27DAP/reference | 1.15273 | 0.087 |
39DAP/reference | 1.14456 | 0.233 |
41DAP/reference | 1.13031 | 0.335 |
42DAP/reference | 1.08552 | 0.195 |
43DAP/reference | 1.14127 | 0.044 |
47DAP/reference | 1.04805 | 0.218 |
52DAP/reference | 1.06077 | 0.279 |
57DAP/reference | 1.08935 | 0.112 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0742 | 0.338 |
17DAP/reference | 1.10278 | 0.456 |
27DAP/reference | 1.17737 | 0.046 |
39DAP/reference | 1.21446 | 0.018 |
41DAP/reference | 1.07356 | 0.181 |
42DAP/reference | 1.16379 | 0.15 |
43DAP/reference | 1.15213 | 0.092 |
47DAP/reference | 0.987 | 0.667 |
52DAP/reference | 1.04744 | 0.657 |
57DAP/reference | 1.09396 | 0.245 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09749 | 0.966 |
26DAP/20DAP | 1.95968 | |
34DAP/26DAP | 0.87598 | |
51DAP/34DAP | 1.25545 | |
52DAP/51DAP | 2.04985 | 0.579 |
53DAP/52DAP | 1.43685 | 0.086 |
55DAP/53DAP | 1.14167 | 0.951 |
57DAP/55DAP | 1.50513 | |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.0098 | 1 |
68DAP/14DAP | 0.55764 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.81983 | 0.954 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.73177 | |
Mature Green Tomato/Ripe Tomato | 0.92905 | 0.446 |
Immature Eggplant/Mature Eggplant | 1.13903 | 0.321 |
Ripe Pepper/Ripe Tomato | 1.22784 | 1 |
Mature Eggplant/Ripe Tomato | 2.90265 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99502 | 1 |
1-1-2/M82 | 0.98424 | 1 |
12-2/M82 | 0.98326 | 0.727 |
12-4/M82 | 0.94629 | 1 |
1-3/M82 | 0.99808 | 1 |
2-1-1/M82 | 1.03803 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.95173 | 1 |
3-2/M82 | 1.01706 | |
4-1-1/M82 | 1.00069 | 1 |
4-1/M82 | 0.90891 | |
4-3-2/M82 | 0.99156 | 1 |
4-3/M82 | 0.94839 | 1 |
5-3/M82 | 0.96359 | 1 |
6-2/M82 | 0.9598 | 1 |
6-3/M82 | 1.02639 | 1 |
7-1/M82 | 1.01124 | 1 |
7-2/M82 | 0.92501 | 0.796 |
9-3-2/M82 | 1.19806 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.98834 | |
IL12-4/WTpooled | 0.99344 | 1 |
IL1-4/WTpooled | 0.99586 | |
WT/WTpooled | 0.87264 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94171 | 1 |
DC3000/delta hrp 6h | 1.05662 | 1 |
DC3000/delta hrp 12h | 0.62688 | 1 |
DC3000/delta hrp 24h | 1.03519 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.85626 | 1 |
Exp 36h | 0.71009 | 0.406 |
Exp 60h | 0.68443 | 0.32 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.09655 | 0.374 |
Var 12h I row2-row1 | 0.99954 | |
Var 12h NI row2-row1 | 0.69494 | |
Var 36h I row2-row1 | 0.36934 | |
Var 36h NI row2-row1 | 1.28568 | 1 |
Var 60h I row2-row1 | 1.07968 | 1 |
Var 60h NI row2-row1 | 1.15591 | 1 |
Time course 0hI-0hNI | 0.35982 | |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | 0.77435 | 0.441 |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94798 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 1.20951 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.16953 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97962 | 0.208 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02126 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.2804 | 0.096 |
Manapal/WT (break) | 1.78501 | 0.126 |
Manapal/WT (red) | 2.13039 | 0.222 |
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