Expression of 1-1-4.3.12.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.049820.838
27DAP/17DAP1.256770.841
39DAP/27DAP1.142120.779
41DAP/39DAP0.982450.873
42DAP/41DAP1.199440.877
43DAP/42DAP1.015171
47DAP/43DAP1.312370.442
52DAP/47DAP0.782530.357
57DAP/52DAP1.224350.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.133480.179
17DAP/reference1.008820.565
27DAP/reference1.006350.925
39DAP/reference1.022030.326
41DAP/reference1.038440.393
42DAP/reference1.067130.018
43DAP/reference1.011380.928
47DAP/reference1.078560.008
52DAP/reference1.166350.083
57DAP/reference1.043550.433

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.340850.334
27DAP/17DAP1.031671
39DAP/27DAP0.81232
41DAP/39DAPN/AN/A
42DAP/41DAP0.933780.679
43DAP/42DAP1.016860.83
47DAP/43DAP1.424560.581
52DAP/47DAP0.639530.112
57DAP/52DAP0.956640.813
57DAP/7DAP1.059531

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.052430.452
17DAP/reference1.073630.028
27DAP/reference1.177320.01
39DAP/reference1.032820.538
41DAP/reference1.052390.303
42DAP/reference1.025720.534
43DAP/reference0.939820.066
47DAP/reference0.975880.293
52DAP/reference0.880510.077
57DAP/reference0.987540.549

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.237630.038
17DAP/reference1.145110.019
27DAP/reference1.152730.087
39DAP/reference1.144560.233
41DAP/reference1.130310.335
42DAP/reference1.085520.195
43DAP/reference1.141270.044
47DAP/reference1.048050.218
52DAP/reference1.060770.279
57DAP/reference1.089350.112

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.07420.338
17DAP/reference1.102780.456
27DAP/reference1.177370.046
39DAP/reference1.214460.018
41DAP/reference1.073560.181
42DAP/reference1.163790.15
43DAP/reference1.152130.092
47DAP/reference0.9870.667
52DAP/reference1.047440.657
57DAP/reference1.093960.245

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.097490.966
26DAP/20DAP1.95968
34DAP/26DAP0.87598
51DAP/34DAP1.25545
52DAP/51DAP2.049850.579
53DAP/52DAP1.436850.086
55DAP/53DAP1.141670.951
57DAP/55DAP1.50513
62DAP/57DAPN/AN/A
68DAP/62DAP1.00981
68DAP/14DAP0.557640.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.819830.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.73177
Mature Green Tomato/Ripe Tomato0.929050.446
Immature Eggplant/Mature Eggplant1.139030.321
Ripe Pepper/Ripe Tomato1.227841
Mature Eggplant/Ripe Tomato2.902650.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.995021
1-1-2/M820.984241
12-2/M820.983260.727
12-4/M820.946291
1-3/M820.998081
2-1-1/M821.038031
2-1/M82N/AN/A
2-6/M820.951731
3-2/M821.01706
4-1-1/M821.000691
4-1/M820.90891
4-3-2/M820.991561
4-3/M820.948391
5-3/M820.963591
6-2/M820.95981
6-3/M821.026391
7-1/M821.011241
7-2/M820.925010.796
9-3-2/M821.19806

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.98834
IL12-4/WTpooled0.993441
IL1-4/WTpooled0.99586
WT/WTpooled0.872641

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.941711
DC3000/delta hrp 6h1.056621
DC3000/delta hrp 12h0.626881
DC3000/delta hrp 24h1.035190.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.856261
Exp 36h0.710090.406
Exp 60h0.684430.32

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.096550.374
Var 12h I row2-row10.99954
Var 12h NI row2-row10.69494
Var 36h I row2-row10.36934
Var 36h NI row2-row11.285681
Var 60h I row2-row11.079681
Var 60h NI row2-row11.155911
Time course 0hI-0hNI0.35982
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNI0.774350.441
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.947980.391
transgenic ySAMdc/azygous control (breaker)1.209510.166
transgenic ySAMdc/azygous control (red)1.169530.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.979620.208

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.021261

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.28040.096
Manapal/WT (break)1.785010.126
Manapal/WT (red)2.130390.222