Expression of 1-1-4.3.13.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28412 | 0.755 |
27DAP/17DAP | 1.21632 | 0.836 |
39DAP/27DAP | 1.06446 | 0.899 |
41DAP/39DAP | 1.40461 | 0.225 |
42DAP/41DAP | 1.02804 | 1 |
43DAP/42DAP | 1.25329 | 0.949 |
47DAP/43DAP | 1.08868 | 1 |
52DAP/47DAP | 1.18125 | 0.813 |
57DAP/52DAP | 0.93222 | 0.869 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03077 | 0.587 |
17DAP/reference | 1.0407 | 0.318 |
27DAP/reference | 1.00934 | 0.953 |
39DAP/reference | 0.99733 | 0.991 |
41DAP/reference | 0.98007 | 0.667 |
42DAP/reference | 0.985 | 0.326 |
43DAP/reference | 0.99443 | 0.861 |
47DAP/reference | 1.0469 | 0.096 |
52DAP/reference | 0.98071 | 0.489 |
57DAP/reference | 1.07008 | 0.109 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0174 | 0.899 |
27DAP/17DAP | 1.02602 | 0.912 |
39DAP/27DAP | 1.05066 | 0.499 |
41DAP/39DAP | 1.00044 | 1 |
42DAP/41DAP | 0.95239 | 0.484 |
43DAP/42DAP | 1.05298 | 0.112 |
47DAP/43DAP | 1.00949 | 0.906 |
52DAP/47DAP | 0.96727 | 0.719 |
57DAP/52DAP | 1.02173 | 0.895 |
57DAP/7DAP | 1.03726 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9654 | 0.088 |
17DAP/reference | 1.00985 | 0.971 |
27DAP/reference | 0.92672 | 0.094 |
39DAP/reference | 0.948 | 0.039 |
41DAP/reference | 0.8872 | 0.047 |
42DAP/reference | 0.88012 | 0.022 |
43DAP/reference | 0.90246 | 0.1 |
47DAP/reference | 0.96194 | 0.504 |
52DAP/reference | 0.88263 | 0.083 |
57DAP/reference | 0.82988 | 0.02 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0199 | 0.794 |
17DAP/reference | 1.02741 | 0.599 |
27DAP/reference | 0.98056 | 0.537 |
39DAP/reference | 1.00253 | 0.769 |
41DAP/reference | 1.10762 | 0.194 |
42DAP/reference | 0.96832 | 0.261 |
43DAP/reference | 1.07218 | 0.347 |
47DAP/reference | 1.03897 | 0.232 |
52DAP/reference | 1.11379 | 0.053 |
57DAP/reference | 1.17801 | 0.048 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93192 | 0.104 |
17DAP/reference | 1.0086 | 0.887 |
27DAP/reference | 0.93698 | 0.089 |
39DAP/reference | 1.07035 | 0.733 |
41DAP/reference | 0.97042 | 0.293 |
42DAP/reference | 1.03808 | 0.627 |
43DAP/reference | 0.96642 | 0.523 |
47DAP/reference | 1.02874 | 0.585 |
52DAP/reference | 1.01119 | 0.979 |
57DAP/reference | 0.91656 | 0.095 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02317 | 0.966 |
26DAP/20DAP | 0.97709 | 1 |
34DAP/26DAP | 1.01862 | 1 |
51DAP/34DAP | 1.01111 | 0.962 |
52DAP/51DAP | 0.99277 | 1 |
53DAP/52DAP | 1.01804 | 0.921 |
55DAP/53DAP | 0.99455 | 0.908 |
57DAP/55DAP | 1.15136 | 0.256 |
62DAP/57DAP | 0.93073 | 0.466 |
68DAP/62DAP | 1.01577 | 1 |
68DAP/14DAP | 0.79181 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05322 | 0.415 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.56502 | 0.136 |
Mature Green Tomato/Ripe Tomato | 0.80193 | 0.086 |
Immature Eggplant/Mature Eggplant | 1.58804 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.41719 | 1 |
Mature Eggplant/Ripe Tomato | 0.5165 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07271 | 1 |
1-1-2/M82 | 1.11325 | 1 |
12-2/M82 | 0.94516 | 0.678 |
12-4/M82 | 1.01299 | 1 |
1-3/M82 | 0.94785 | 0.441 |
2-1-1/M82 | 1.05114 | 1 |
2-1/M82 | 1.00025 | 1 |
2-6/M82 | 0.98576 | 1 |
3-2/M82 | 0.99938 | 1 |
4-1-1/M82 | 1.06934 | 1 |
4-1/M82 | 1.03343 | 1 |
4-3-2/M82 | 1.01264 | 1 |
4-3/M82 | 1.05686 | 1 |
5-3/M82 | 0.99538 | 1 |
6-2/M82 | 1.021 | 1 |
6-3/M82 | 0.96965 | 1 |
7-1/M82 | 1.01674 | 1 |
7-2/M82 | 0.97026 | 0.881 |
9-3-2/M82 | 1.45662 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.95152 | 1 |
IL12-4/WTpooled | 0.67088 | 0.554 |
IL1-4/WTpooled | 0.63933 | |
WT/WTpooled | 0.98084 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.86252 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04397 | 0.921 |
DC3000/delta hrp 6h | 1.17699 | 1 |
DC3000/delta hrp 12h | 0.9911 | 1 |
DC3000/delta hrp 24h | 0.95362 | 0.607 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06018 | 0.25 |
DC3000 delta B/DC3000 delta AB | 1.07742 | 0.406 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.13178 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.87419 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01714 | 1 |
Var 0h | 0.35203 | 1 |
Var 12h I row2-row1 | 1.11986 | 0.324 |
Var 12h NI row2-row1 | 0.94157 | 0.546 |
Var 36h I row2-row1 | 0.9726 | 0.805 |
Var 36h NI row2-row1 | 0.95185 | 0.61 |
Var 60h I row2-row1 | 1.07753 | 1 |
Var 60h NI row2-row1 | 1.01099 | 1 |
Time course 0hI-0hNI | 1.08877 | 0.662 |
Time course 12hI-12hNI | 0.96034 | 0.632 |
Time course 36hI-36hNI | 1.00827 | 1 |
Time course 60hI-60hNI | 1.0261 | 0.426 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97825 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.09467 | 1 |
transgenic ySAMdc/azygous control (red) | 0.87467 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03191 | 0.1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.14425 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.24262 | 1 |
Manapal/WT (red) | 1.0228 | 1 |
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