Expression of 1-1-4.3.13.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.284120.755
27DAP/17DAP1.216320.836
39DAP/27DAP1.064460.899
41DAP/39DAP1.404610.225
42DAP/41DAP1.028041
43DAP/42DAP1.253290.949
47DAP/43DAP1.088681
52DAP/47DAP1.181250.813
57DAP/52DAP0.932220.869

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.030770.587
17DAP/reference1.04070.318
27DAP/reference1.009340.953
39DAP/reference0.997330.991
41DAP/reference0.980070.667
42DAP/reference0.9850.326
43DAP/reference0.994430.861
47DAP/reference1.04690.096
52DAP/reference0.980710.489
57DAP/reference1.070080.109

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.01740.899
27DAP/17DAP1.026020.912
39DAP/27DAP1.050660.499
41DAP/39DAP1.000441
42DAP/41DAP0.952390.484
43DAP/42DAP1.052980.112
47DAP/43DAP1.009490.906
52DAP/47DAP0.967270.719
57DAP/52DAP1.021730.895
57DAP/7DAP1.037261

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.96540.088
17DAP/reference1.009850.971
27DAP/reference0.926720.094
39DAP/reference0.9480.039
41DAP/reference0.88720.047
42DAP/reference0.880120.022
43DAP/reference0.902460.1
47DAP/reference0.961940.504
52DAP/reference0.882630.083
57DAP/reference0.829880.02

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01990.794
17DAP/reference1.027410.599
27DAP/reference0.980560.537
39DAP/reference1.002530.769
41DAP/reference1.107620.194
42DAP/reference0.968320.261
43DAP/reference1.072180.347
47DAP/reference1.038970.232
52DAP/reference1.113790.053
57DAP/reference1.178010.048

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931920.104
17DAP/reference1.00860.887
27DAP/reference0.936980.089
39DAP/reference1.070350.733
41DAP/reference0.970420.293
42DAP/reference1.038080.627
43DAP/reference0.966420.523
47DAP/reference1.028740.585
52DAP/reference1.011190.979
57DAP/reference0.916560.095

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.023170.966
26DAP/20DAP0.977091
34DAP/26DAP1.018621
51DAP/34DAP1.011110.962
52DAP/51DAP0.992771
53DAP/52DAP1.018040.921
55DAP/53DAP0.994550.908
57DAP/55DAP1.151360.256
62DAP/57DAP0.930730.466
68DAP/62DAP1.015771
68DAP/14DAP0.791810.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.053220.415

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.565020.136
Mature Green Tomato/Ripe Tomato0.801930.086
Immature Eggplant/Mature Eggplant1.588040.05
Ripe Pepper/Ripe Tomato1.417191
Mature Eggplant/Ripe Tomato0.51650.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.072711
1-1-2/M821.113251
12-2/M820.945160.678
12-4/M821.012991
1-3/M820.947850.441
2-1-1/M821.051141
2-1/M821.000251
2-6/M820.985761
3-2/M820.999381
4-1-1/M821.069341
4-1/M821.033431
4-3-2/M821.012641
4-3/M821.056861
5-3/M820.995381
6-2/M821.0211
6-3/M820.969651
7-1/M821.016741
7-2/M820.970260.881
9-3-2/M821.456621

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.951521
IL12-4/WTpooled0.670880.554
IL1-4/WTpooled0.63933
WT/WTpooled0.980841

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.862520.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.043970.921
DC3000/delta hrp 6h1.176991
DC3000/delta hrp 12h0.99111
DC3000/delta hrp 24h0.953620.607

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.060180.25
DC3000 delta B/DC3000 delta AB1.077420.406

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.131781
Exp 36hN/AN/A
Exp 60h0.874190.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.017141
Var 0h0.352031
Var 12h I row2-row11.119860.324
Var 12h NI row2-row10.941570.546
Var 36h I row2-row10.97260.805
Var 36h NI row2-row10.951850.61
Var 60h I row2-row11.077531
Var 60h NI row2-row11.010991
Time course 0hI-0hNI1.088770.662
Time course 12hI-12hNI0.960340.632
Time course 36hI-36hNI1.008271
Time course 60hI-60hNI1.02610.426

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.978250.362
transgenic ySAMdc/azygous control (breaker)1.094671
transgenic ySAMdc/azygous control (red)0.874671

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.031910.1

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.144250.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.242621
Manapal/WT (red)1.02281