Expression of 1-1-4.3.14.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.718340.125
27DAP/17DAP0.776650.442
39DAP/27DAP1.344520.287
41DAP/39DAP0.636020.06
42DAP/41DAP1.063731
43DAP/42DAP1.305390.861
47DAP/43DAP0.526460.059
52DAP/47DAP1.618290.284
57DAP/52DAP0.980090.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.823860.02
17DAP/reference1.051770.858
27DAP/reference0.631160.014
39DAP/reference0.731490.066
41DAP/reference0.742690.085
42DAP/reference1.238820.002
43DAP/reference0.797820.018
47DAP/reference0.838050.007
52DAP/reference0.596540.013
57DAP/reference0.63510.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.848830.164
27DAP/17DAP0.96480.821
39DAP/27DAP0.811780.064
41DAP/39DAP1.279460.921
42DAP/41DAP0.9850.77
43DAP/42DAP0.88030.044
47DAP/43DAP0.942570.543
52DAP/47DAP0.594220.041
57DAP/52DAP0.887170.501
57DAP/7DAP0.278690.186

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.714720.024
17DAP/reference2.004010.011
27DAP/reference1.522540.011
39DAP/reference1.276970.016
41DAP/reference1.515060.01
42DAP/reference1.268630.03
43DAP/reference1.209990.022
47DAP/reference1.217710.043
52DAP/reference1.268840.159
57DAP/reference1.103250.382

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.247290.416
17DAP/reference1.577120.01
27DAP/reference1.603380.06
39DAP/reference0.951970.37
41DAP/reference1.436740.009
42DAP/reference1.808110.008
43DAP/reference0.884820.257
47DAP/reference1.241770.033
52DAP/reference0.61290.003
57DAP/reference0.668230.02

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.252440.015
17DAP/reference1.676870.153
27DAP/reference1.604130.023
39DAP/reference1.647860.007
41DAP/reference1.168020.013
42DAP/reference1.389370.091
43DAP/reference1.522070.068
47DAP/reference0.607620.009
52DAP/reference0.981120.732
57DAP/reference1.274960.223

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.16610.966
26DAP/20DAP3.389670.097
34DAP/26DAP0.7170.186
51DAP/34DAP0.929570.624
52DAP/51DAP1.06090.842
53DAP/52DAP0.964330.844
55DAP/53DAP0.898640.376
57DAP/55DAP1.141830.34
62DAP/57DAP1.075570.935
68DAP/62DAP0.824490.227
68DAP/14DAP1.055651

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.907090.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.858680.336
Mature Green Tomato/Ripe Tomato2.352910.058
Immature Eggplant/Mature Eggplant0.975450.72
Ripe Pepper/Ripe Tomato1.102761
Mature Eggplant/Ripe Tomato1.960620.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.013810.877
1-1-2/M821.194991
12-2/M820.923010.955
12-4/M821.038260.694
1-3/M821.247831
2-1-1/M821.00502
2-1/M821.184331
2-6/M821.036350.695
3-2/M821.023611
4-1-1/M821.244191
4-1/M821.244460.444
4-3-2/M821.546120.284
4-3/M821.393731
5-3/M821.095331
6-2/M821.200571
6-3/M821.002161
7-1/M821.167310.741
7-2/M821.190290.324
9-3-2/M821.5611

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.584210.277
IL2-6/WTpooled0.626310.348
IL7-5/WTpooled1.39093
IL7-3/WTpooled1.229130.362
IL12-4/WTpooled1.175190.595
IL1-4/WTpooled0.86950.415
WT/WTpooled1.007630.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.163881

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.974881
DC3000/delta hrp 6h1.083210.609
DC3000/delta hrp 12h1.053241
DC3000/delta hrp 24h1.086210.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.524050.053
DC3000 delta B/DC3000 delta AB1.611190.083

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.202421
Exp 36h1.286980.693
Exp 60h1.693290.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001131
Var 0h1.247070.98
Var 12h I row2-row11.098350.692
Var 12h NI row2-row11.101271
Var 36h I row2-row11.056061
Var 36h NI row2-row10.864370.478
Var 60h I row2-row10.814370.285
Var 60h NI row2-row10.843940.431
Time course 0hI-0hNI1.137840.413
Time course 12hI-12hNI1.065770.698
Time course 36hI-36hNI1.691680.005
Time course 60hI-60hNI6.018230.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.198770.541
transgenic ySAMdc/azygous control (breaker)1.304310.248
transgenic ySAMdc/azygous control (red)1.289770.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.177730.204

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.551910.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.92871
Manapal/WT (break)0.944311
Manapal/WT (red)0.733740.181