Expression of 1-1-4.3.14.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.71834 | 0.125 |
27DAP/17DAP | 0.77665 | 0.442 |
39DAP/27DAP | 1.34452 | 0.287 |
41DAP/39DAP | 0.63602 | 0.06 |
42DAP/41DAP | 1.06373 | 1 |
43DAP/42DAP | 1.30539 | 0.861 |
47DAP/43DAP | 0.52646 | 0.059 |
52DAP/47DAP | 1.61829 | 0.284 |
57DAP/52DAP | 0.98009 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.82386 | 0.02 |
17DAP/reference | 1.05177 | 0.858 |
27DAP/reference | 0.63116 | 0.014 |
39DAP/reference | 0.73149 | 0.066 |
41DAP/reference | 0.74269 | 0.085 |
42DAP/reference | 1.23882 | 0.002 |
43DAP/reference | 0.79782 | 0.018 |
47DAP/reference | 0.83805 | 0.007 |
52DAP/reference | 0.59654 | 0.013 |
57DAP/reference | 0.6351 | 0.009 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84883 | 0.164 |
27DAP/17DAP | 0.9648 | 0.821 |
39DAP/27DAP | 0.81178 | 0.064 |
41DAP/39DAP | 1.27946 | 0.921 |
42DAP/41DAP | 0.985 | 0.77 |
43DAP/42DAP | 0.8803 | 0.044 |
47DAP/43DAP | 0.94257 | 0.543 |
52DAP/47DAP | 0.59422 | 0.041 |
57DAP/52DAP | 0.88717 | 0.501 |
57DAP/7DAP | 0.27869 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.71472 | 0.024 |
17DAP/reference | 2.00401 | 0.011 |
27DAP/reference | 1.52254 | 0.011 |
39DAP/reference | 1.27697 | 0.016 |
41DAP/reference | 1.51506 | 0.01 |
42DAP/reference | 1.26863 | 0.03 |
43DAP/reference | 1.20999 | 0.022 |
47DAP/reference | 1.21771 | 0.043 |
52DAP/reference | 1.26884 | 0.159 |
57DAP/reference | 1.10325 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24729 | 0.416 |
17DAP/reference | 1.57712 | 0.01 |
27DAP/reference | 1.60338 | 0.06 |
39DAP/reference | 0.95197 | 0.37 |
41DAP/reference | 1.43674 | 0.009 |
42DAP/reference | 1.80811 | 0.008 |
43DAP/reference | 0.88482 | 0.257 |
47DAP/reference | 1.24177 | 0.033 |
52DAP/reference | 0.6129 | 0.003 |
57DAP/reference | 0.66823 | 0.02 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.25244 | 0.015 |
17DAP/reference | 1.67687 | 0.153 |
27DAP/reference | 1.60413 | 0.023 |
39DAP/reference | 1.64786 | 0.007 |
41DAP/reference | 1.16802 | 0.013 |
42DAP/reference | 1.38937 | 0.091 |
43DAP/reference | 1.52207 | 0.068 |
47DAP/reference | 0.60762 | 0.009 |
52DAP/reference | 0.98112 | 0.732 |
57DAP/reference | 1.27496 | 0.223 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1661 | 0.966 |
26DAP/20DAP | 3.38967 | 0.097 |
34DAP/26DAP | 0.717 | 0.186 |
51DAP/34DAP | 0.92957 | 0.624 |
52DAP/51DAP | 1.0609 | 0.842 |
53DAP/52DAP | 0.96433 | 0.844 |
55DAP/53DAP | 0.89864 | 0.376 |
57DAP/55DAP | 1.14183 | 0.34 |
62DAP/57DAP | 1.07557 | 0.935 |
68DAP/62DAP | 0.82449 | 0.227 |
68DAP/14DAP | 1.05565 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.90709 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.85868 | 0.336 |
Mature Green Tomato/Ripe Tomato | 2.35291 | 0.058 |
Immature Eggplant/Mature Eggplant | 0.97545 | 0.72 |
Ripe Pepper/Ripe Tomato | 1.10276 | 1 |
Mature Eggplant/Ripe Tomato | 1.96062 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01381 | 0.877 |
1-1-2/M82 | 1.19499 | 1 |
12-2/M82 | 0.92301 | 0.955 |
12-4/M82 | 1.03826 | 0.694 |
1-3/M82 | 1.24783 | 1 |
2-1-1/M82 | 1.00502 | |
2-1/M82 | 1.18433 | 1 |
2-6/M82 | 1.03635 | 0.695 |
3-2/M82 | 1.02361 | 1 |
4-1-1/M82 | 1.24419 | 1 |
4-1/M82 | 1.24446 | 0.444 |
4-3-2/M82 | 1.54612 | 0.284 |
4-3/M82 | 1.39373 | 1 |
5-3/M82 | 1.09533 | 1 |
6-2/M82 | 1.20057 | 1 |
6-3/M82 | 1.00216 | 1 |
7-1/M82 | 1.16731 | 0.741 |
7-2/M82 | 1.19029 | 0.324 |
9-3-2/M82 | 1.5611 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.58421 | 0.277 |
IL2-6/WTpooled | 0.62631 | 0.348 |
IL7-5/WTpooled | 1.39093 | |
IL7-3/WTpooled | 1.22913 | 0.362 |
IL12-4/WTpooled | 1.17519 | 0.595 |
IL1-4/WTpooled | 0.8695 | 0.415 |
WT/WTpooled | 1.00763 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16388 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97488 | 1 |
DC3000/delta hrp 6h | 1.08321 | 0.609 |
DC3000/delta hrp 12h | 1.05324 | 1 |
DC3000/delta hrp 24h | 1.08621 | 0.453 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.52405 | 0.053 |
DC3000 delta B/DC3000 delta AB | 1.61119 | 0.083 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.20242 | 1 |
Exp 36h | 1.28698 | 0.693 |
Exp 60h | 1.69329 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00113 | 1 |
Var 0h | 1.24707 | 0.98 |
Var 12h I row2-row1 | 1.09835 | 0.692 |
Var 12h NI row2-row1 | 1.10127 | 1 |
Var 36h I row2-row1 | 1.05606 | 1 |
Var 36h NI row2-row1 | 0.86437 | 0.478 |
Var 60h I row2-row1 | 0.81437 | 0.285 |
Var 60h NI row2-row1 | 0.84394 | 0.431 |
Time course 0hI-0hNI | 1.13784 | 0.413 |
Time course 12hI-12hNI | 1.06577 | 0.698 |
Time course 36hI-36hNI | 1.69168 | 0.005 |
Time course 60hI-60hNI | 6.01823 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.19877 | 0.541 |
transgenic ySAMdc/azygous control (breaker) | 1.30431 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.28977 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.17773 | 0.204 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.55191 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.9287 | 1 |
Manapal/WT (break) | 0.94431 | 1 |
Manapal/WT (red) | 0.73374 | 0.181 |
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