Expression of 1-1-4.3.15.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16698 | 0.477 |
27DAP/17DAP | 1.1654 | 0.804 |
39DAP/27DAP | 1.28248 | 0.768 |
41DAP/39DAP | 1.00959 | 0.994 |
42DAP/41DAP | 1.17328 | 0.806 |
43DAP/42DAP | 0.99089 | 0.937 |
47DAP/43DAP | 1.3139 | 0.198 |
52DAP/47DAP | 1.04638 | 0.946 |
57DAP/52DAP | 1.02678 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14344 | 0.093 |
17DAP/reference | 1.10108 | 0.03 |
27DAP/reference | 1.04374 | 0.509 |
39DAP/reference | 1.12272 | 0.162 |
41DAP/reference | 1.35626 | 0.012 |
42DAP/reference | 1.27722 | 0.019 |
43DAP/reference | 1.06575 | 0.518 |
47DAP/reference | 1.16081 | 0.044 |
52DAP/reference | 1.07267 | 0.256 |
57DAP/reference | 0.94828 | 0.308 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00953 | 1 |
27DAP/17DAP | 0.99326 | 0.943 |
39DAP/27DAP | 1.13564 | 0.227 |
41DAP/39DAP | 1.01806 | 0.921 |
42DAP/41DAP | 0.97515 | 0.752 |
43DAP/42DAP | 1.02986 | 0.351 |
47DAP/43DAP | 1.02361 | 0.833 |
52DAP/47DAP | 0.97675 | 0.876 |
57DAP/52DAP | 1.03602 | 0.825 |
57DAP/7DAP | 1.05387 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54183 | 0.041 |
17DAP/reference | 1.3417 | 0.084 |
27DAP/reference | 1.3784 | 0.06 |
39DAP/reference | 1.42805 | 0.015 |
41DAP/reference | 1.49866 | 0.043 |
42DAP/reference | 1.35845 | 0.1 |
43DAP/reference | 1.26628 | 0.027 |
47DAP/reference | 1.21138 | 0.298 |
52DAP/reference | 1.81139 | 0.016 |
57DAP/reference | 1.50317 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50351 | 0.094 |
17DAP/reference | 1.43902 | 0.016 |
27DAP/reference | 1.24358 | 0.221 |
39DAP/reference | 1.51102 | 0.034 |
41DAP/reference | 1.24064 | 0.086 |
42DAP/reference | 1.15606 | 0.207 |
43DAP/reference | 1.3284 | 0.352 |
47DAP/reference | 1.1942 | 0.046 |
52DAP/reference | 1.28934 | 0.01 |
57DAP/reference | 1.69079 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.78982 | 0.018 |
17DAP/reference | 1.13715 | 0.203 |
27DAP/reference | 1.33032 | 0.045 |
39DAP/reference | 1.40678 | 0.015 |
41DAP/reference | 1.46392 | 0.012 |
42DAP/reference | 1.20741 | 0.127 |
43DAP/reference | 1.47249 | 0.026 |
47DAP/reference | 1.20153 | 0.085 |
52DAP/reference | 1.46196 | 0.106 |
57DAP/reference | 0.99046 | 0.661 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13526 | 0.966 |
26DAP/20DAP | 1.15087 | 0.499 |
34DAP/26DAP | 1.06436 | 0.819 |
51DAP/34DAP | 1.00972 | 0.978 |
52DAP/51DAP | 0.96917 | 1 |
53DAP/52DAP | 1.03146 | 0.91 |
55DAP/53DAP | 0.97956 | 0.82 |
57DAP/55DAP | 1.21148 | 0.764 |
62DAP/57DAP | 0.98023 | 0.994 |
68DAP/62DAP | 0.70679 | 0.263 |
68DAP/14DAP | 0.52366 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84033 | 0.054 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.59529 | |
Mature Green Tomato/Ripe Tomato | 0.84555 | 0.256 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.23162 | 0.224 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.60115 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.87476 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.95716 | 1 |
4-3-2/M82 | 0.73851 | 0.487 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.97332 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.82707 | |
IL2-6/WTpooled | 0.85813 | 1 |
IL7-5/WTpooled | 1.19785 | |
IL7-3/WTpooled | 1.01343 | 1 |
IL12-4/WTpooled | 1.01093 | 1 |
IL1-4/WTpooled | 0.84053 | 0.402 |
WT/WTpooled | 1.08402 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15665 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.50546 | |
DC3000/delta hrp 6h | 1.33963 | 1 |
DC3000/delta hrp 12h | 1.20896 | 1 |
DC3000/delta hrp 24h | 1.2214 | |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.01616 | 0.556 |
DC3000 delta B/DC3000 delta AB | 1.05241 | 0.491 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0092 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.3562 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0685 | 1 |
Var 0h | 0.92038 | 1 |
Var 12h I row2-row1 | 1.31767 | 0.283 |
Var 12h NI row2-row1 | 1.02365 | 1 |
Var 36h I row2-row1 | 1.03406 | 1 |
Var 36h NI row2-row1 | 1.10066 | 1 |
Var 60h I row2-row1 | 0.97993 | 0.952 |
Var 60h NI row2-row1 | 1.12739 | 0.904 |
Time course 0hI-0hNI | 1.00855 | 1 |
Time course 12hI-12hNI | 1.10854 | 0.216 |
Time course 36hI-36hNI | 1.17164 | 0.147 |
Time course 60hI-60hNI | 1.14748 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91889 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 1.12331 | 1 |
transgenic ySAMdc/azygous control (red) | 0.94753 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95671 | 0.263 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.17331 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.57277 | 0.172 |
Manapal/WT (break) | 0.7037 | 0.297 |
Manapal/WT (red) | 0.91218 | 0.36 |
|
|