Expression of 1-1-4.3.15.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.166980.477
27DAP/17DAP1.16540.804
39DAP/27DAP1.282480.768
41DAP/39DAP1.009590.994
42DAP/41DAP1.173280.806
43DAP/42DAP0.990890.937
47DAP/43DAP1.31390.198
52DAP/47DAP1.046380.946
57DAP/52DAP1.026781

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.143440.093
17DAP/reference1.101080.03
27DAP/reference1.043740.509
39DAP/reference1.122720.162
41DAP/reference1.356260.012
42DAP/reference1.277220.019
43DAP/reference1.065750.518
47DAP/reference1.160810.044
52DAP/reference1.072670.256
57DAP/reference0.948280.308

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009531
27DAP/17DAP0.993260.943
39DAP/27DAP1.135640.227
41DAP/39DAP1.018060.921
42DAP/41DAP0.975150.752
43DAP/42DAP1.029860.351
47DAP/43DAP1.023610.833
52DAP/47DAP0.976750.876
57DAP/52DAP1.036020.825
57DAP/7DAP1.053871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.541830.041
17DAP/reference1.34170.084
27DAP/reference1.37840.06
39DAP/reference1.428050.015
41DAP/reference1.498660.043
42DAP/reference1.358450.1
43DAP/reference1.266280.027
47DAP/reference1.211380.298
52DAP/reference1.811390.016
57DAP/reference1.503170.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.503510.094
17DAP/reference1.439020.016
27DAP/reference1.243580.221
39DAP/reference1.511020.034
41DAP/reference1.240640.086
42DAP/reference1.156060.207
43DAP/reference1.32840.352
47DAP/reference1.19420.046
52DAP/reference1.289340.01
57DAP/reference1.690790.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.789820.018
17DAP/reference1.137150.203
27DAP/reference1.330320.045
39DAP/reference1.406780.015
41DAP/reference1.463920.012
42DAP/reference1.207410.127
43DAP/reference1.472490.026
47DAP/reference1.201530.085
52DAP/reference1.461960.106
57DAP/reference0.990460.661

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.135260.966
26DAP/20DAP1.150870.499
34DAP/26DAP1.064360.819
51DAP/34DAP1.009720.978
52DAP/51DAP0.969171
53DAP/52DAP1.031460.91
55DAP/53DAP0.979560.82
57DAP/55DAP1.211480.764
62DAP/57DAP0.980230.994
68DAP/62DAP0.706790.263
68DAP/14DAP0.523660.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.840330.054

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.59529
Mature Green Tomato/Ripe Tomato0.845550.256
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.231620.224
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.60115
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.874761
4-1-1/M82N/AN/A
4-1/M820.957161
4-3-2/M820.738510.487
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.973321

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.82707
IL2-6/WTpooled0.858131
IL7-5/WTpooled1.19785
IL7-3/WTpooled1.013431
IL12-4/WTpooled1.010931
IL1-4/WTpooled0.840530.402
WT/WTpooled1.084021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.156651

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.50546
DC3000/delta hrp 6h1.339631
DC3000/delta hrp 12h1.208961
DC3000/delta hrp 24h1.2214

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.016160.556
DC3000 delta B/DC3000 delta AB1.052410.491

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.00921
Exp 36hN/AN/A
Exp 60h1.35620.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.06851
Var 0h0.920381
Var 12h I row2-row11.317670.283
Var 12h NI row2-row11.023651
Var 36h I row2-row11.034061
Var 36h NI row2-row11.100661
Var 60h I row2-row10.979930.952
Var 60h NI row2-row11.127390.904
Time course 0hI-0hNI1.008551
Time course 12hI-12hNI1.108540.216
Time course 36hI-36hNI1.171640.147
Time course 60hI-60hNI1.147480.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.918890.485
transgenic ySAMdc/azygous control (breaker)1.123311
transgenic ySAMdc/azygous control (red)0.947531

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.956710.263

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.173310.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.572770.172
Manapal/WT (break)0.70370.297
Manapal/WT (red)0.912180.36