Expression of 1-1-4.3.15.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.71311 | 0.078 |
27DAP/17DAP | 1.04158 | 1 |
39DAP/27DAP | 1.39983 | 0.789 |
41DAP/39DAP | 1.25102 | 0.642 |
42DAP/41DAP | 0.86503 | 1 |
43DAP/42DAP | 0.94765 | 0.877 |
47DAP/43DAP | 1.10197 | 0.965 |
52DAP/47DAP | 1.3675 | 0.615 |
57DAP/52DAP | 0.83406 | 0.759 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10524 | 0.334 |
17DAP/reference | 1.12409 | 0.138 |
27DAP/reference | 1.10746 | 0.426 |
39DAP/reference | 1.09511 | 0.262 |
41DAP/reference | 1.26108 | 0.023 |
42DAP/reference | 1.21022 | 0.001 |
43DAP/reference | 1.05417 | 0.705 |
47DAP/reference | 1.05542 | 0.627 |
52DAP/reference | 1.0095 | 1 |
57DAP/reference | 1.05701 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02264 | 1 |
27DAP/17DAP | 0.88096 | 0.39 |
39DAP/27DAP | 0.95991 | 0.732 |
41DAP/39DAP | 1.01565 | 0.909 |
42DAP/41DAP | 1.05671 | 0.783 |
43DAP/42DAP | 0.98374 | 0.854 |
47DAP/43DAP | 1.02971 | 0.973 |
52DAP/47DAP | 0.90726 | 0.482 |
57DAP/52DAP | 0.83957 | 0.346 |
57DAP/7DAP | 0.92329 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93957 | 0.326 |
17DAP/reference | 0.96514 | 0.338 |
27DAP/reference | 0.90712 | 0.055 |
39DAP/reference | 0.88717 | 0.126 |
41DAP/reference | 0.87237 | 0.013 |
42DAP/reference | 0.88648 | 0.015 |
43DAP/reference | 0.87148 | 0.1 |
47DAP/reference | 1.01083 | 1 |
52DAP/reference | 0.9656 | 0.363 |
57DAP/reference | 0.7818 | 0.025 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12707 | 0.289 |
17DAP/reference | 1.33567 | 0.176 |
27DAP/reference | 1.34407 | 0.2 |
39DAP/reference | 1.04082 | 1 |
41DAP/reference | 1.13416 | 0.382 |
42DAP/reference | 1.15591 | 0.274 |
43DAP/reference | 1.36938 | 0.099 |
47DAP/reference | 1.22435 | 0.024 |
52DAP/reference | 1.08394 | 0.667 |
57DAP/reference | 0.97746 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97386 | 0.489 |
17DAP/reference | 1.12344 | 0.531 |
27DAP/reference | 0.81919 | 0.048 |
39DAP/reference | 0.82249 | 0.026 |
41DAP/reference | 1.05704 | 0.754 |
42DAP/reference | 1.15819 | 0.51 |
43DAP/reference | 1.13328 | 0.524 |
47DAP/reference | 0.97678 | 0.478 |
52DAP/reference | 0.82819 | 0.22 |
57DAP/reference | 1.07145 | 0.786 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07415 | 1 |
26DAP/20DAP | 0.90868 | 1 |
34DAP/26DAP | 1.01738 | 1 |
51DAP/34DAP | 0.7833 | 0.449 |
52DAP/51DAP | 1.27666 | 0.09 |
53DAP/52DAP | 1.09312 | 0.819 |
55DAP/53DAP | 1.13253 | 0.452 |
57DAP/55DAP | 0.95815 | 0.694 |
62DAP/57DAP | 0.8773 | 0.681 |
68DAP/62DAP | 1.01253 | 1 |
68DAP/14DAP | 0.46047 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.09281 | 0.7 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.87527 | 0.487 |
Immature Eggplant/Mature Eggplant | 0.89373 | 0.079 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06377 | 0.877 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.12011 | |
1-3/M82 | 0.75785 | |
2-1-1/M82 | 0.64064 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.9359 | |
3-2/M82 | 1.01854 | 0.967 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.15018 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.90794 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.85525 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.254 | 0.277 |
IL2-6/WTpooled | 0.92214 | 0.473 |
IL7-5/WTpooled | 1.00135 | 1 |
IL7-3/WTpooled | 1.10518 | 1 |
IL12-4/WTpooled | 1.19083 | 0.557 |
IL1-4/WTpooled | 1.14743 | 1 |
WT/WTpooled | 0.96072 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88134 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0981 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.94021 | 1 |
DC3000/delta hrp 24h | 1.41561 | 0.036 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.51202 | 0.11 |
DC3000 delta B/DC3000 delta AB | 1.12295 | 0.315 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12358 | 1 |
Exp 36h | 1.17191 | 1 |
Exp 60h | 0.84335 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.82006 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07241 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.13718 | 1 |
transgenic ySAMdc/azygous control (red) | 1.0919 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89321 | 0.049 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.05664 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.61289 | 0.093 |
Manapal/WT (break) | 1.27462 | 0.381 |
Manapal/WT (red) | N/A | N/A |
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