Expression of 1-1-4.3.15.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.713110.078
27DAP/17DAP1.041581
39DAP/27DAP1.399830.789
41DAP/39DAP1.251020.642
42DAP/41DAP0.865031
43DAP/42DAP0.947650.877
47DAP/43DAP1.101970.965
52DAP/47DAP1.36750.615
57DAP/52DAP0.834060.759

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.105240.334
17DAP/reference1.124090.138
27DAP/reference1.107460.426
39DAP/reference1.095110.262
41DAP/reference1.261080.023
42DAP/reference1.210220.001
43DAP/reference1.054170.705
47DAP/reference1.055420.627
52DAP/reference1.00951
57DAP/reference1.057011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.022641
27DAP/17DAP0.880960.39
39DAP/27DAP0.959910.732
41DAP/39DAP1.015650.909
42DAP/41DAP1.056710.783
43DAP/42DAP0.983740.854
47DAP/43DAP1.029710.973
52DAP/47DAP0.907260.482
57DAP/52DAP0.839570.346
57DAP/7DAP0.923291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.939570.326
17DAP/reference0.965140.338
27DAP/reference0.907120.055
39DAP/reference0.887170.126
41DAP/reference0.872370.013
42DAP/reference0.886480.015
43DAP/reference0.871480.1
47DAP/reference1.010831
52DAP/reference0.96560.363
57DAP/reference0.78180.025

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.127070.289
17DAP/reference1.335670.176
27DAP/reference1.344070.2
39DAP/reference1.040821
41DAP/reference1.134160.382
42DAP/reference1.155910.274
43DAP/reference1.369380.099
47DAP/reference1.224350.024
52DAP/reference1.083940.667
57DAP/reference0.977460.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.973860.489
17DAP/reference1.123440.531
27DAP/reference0.819190.048
39DAP/reference0.822490.026
41DAP/reference1.057040.754
42DAP/reference1.158190.51
43DAP/reference1.133280.524
47DAP/reference0.976780.478
52DAP/reference0.828190.22
57DAP/reference1.071450.786

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.074151
26DAP/20DAP0.908681
34DAP/26DAP1.017381
51DAP/34DAP0.78330.449
52DAP/51DAP1.276660.09
53DAP/52DAP1.093120.819
55DAP/53DAP1.132530.452
57DAP/55DAP0.958150.694
62DAP/57DAP0.87730.681
68DAP/62DAP1.012531
68DAP/14DAP0.46047

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.092810.7

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.875270.487
Immature Eggplant/Mature Eggplant0.893730.079
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.063770.877
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.12011
1-3/M820.75785
2-1-1/M820.64064
2-1/M82N/AN/A
2-6/M820.9359
3-2/M821.018540.967
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.15018
4-3/M82N/AN/A
5-3/M820.907941
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.855250.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.2540.277
IL2-6/WTpooled0.922140.473
IL7-5/WTpooled1.001351
IL7-3/WTpooled1.105181
IL12-4/WTpooled1.190830.557
IL1-4/WTpooled1.147431
WT/WTpooled0.960721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.881340.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.09810.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.940211
DC3000/delta hrp 24h1.415610.036

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.512020.11
DC3000 delta B/DC3000 delta AB1.122950.315

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.123581
Exp 36h1.171911
Exp 60h0.843350.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.820061
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.072410.748
transgenic ySAMdc/azygous control (breaker)1.137181
transgenic ySAMdc/azygous control (red)1.09190.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.893210.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.056641

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.612890.093
Manapal/WT (break)1.274620.381
Manapal/WT (red)N/AN/A