Expression of 1-1-4.3.15.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09291 | 0.615 |
27DAP/17DAP | 1.0192 | 0.92 |
39DAP/27DAP | 1.02122 | 0.899 |
41DAP/39DAP | 1.03007 | 0.78 |
42DAP/41DAP | 0.88177 | 1 |
43DAP/42DAP | 0.99213 | 0.937 |
47DAP/43DAP | 1.14699 | 0.809 |
52DAP/47DAP | 0.83835 | 0.568 |
57DAP/52DAP | 0.94611 | 0.833 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92923 | 0.162 |
17DAP/reference | 0.99663 | 0.904 |
27DAP/reference | 0.97562 | 0.275 |
39DAP/reference | 0.9856 | 0.72 |
41DAP/reference | 1.04016 | 0.552 |
42DAP/reference | 0.95837 | 0.048 |
43DAP/reference | 0.98007 | 0.631 |
47DAP/reference | 0.97909 | 0.3 |
52DAP/reference | 0.85813 | 0.118 |
57DAP/reference | 1.0705 | 0.321 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01553 | 0.899 |
27DAP/17DAP | 0.97928 | 0.887 |
39DAP/27DAP | 0.95961 | 0.622 |
41DAP/39DAP | 0.97479 | 0.973 |
42DAP/41DAP | 1.05658 | 0.539 |
43DAP/42DAP | 1.00225 | 0.83 |
47DAP/43DAP | 0.91497 | 0.373 |
52DAP/47DAP | 0.92516 | 0.572 |
57DAP/52DAP | 0.99415 | 0.869 |
57DAP/7DAP | 0.86892 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96698 | 0.326 |
17DAP/reference | 0.9817 | 0.338 |
27DAP/reference | 0.92224 | 0.031 |
39DAP/reference | 1.01279 | 0.909 |
41DAP/reference | 1.02562 | 0.678 |
42DAP/reference | 0.94333 | 0.095 |
43DAP/reference | 0.97175 | 0.334 |
47DAP/reference | 0.98962 | 0.671 |
52DAP/reference | 0.97202 | 0.278 |
57DAP/reference | 1.10882 | 0.308 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0067 | 0.885 |
17DAP/reference | 0.98332 | 0.548 |
27DAP/reference | 0.94569 | 0.24 |
39DAP/reference | 0.92247 | 0.079 |
41DAP/reference | 0.90225 | 0.073 |
42DAP/reference | 0.98773 | 0.534 |
43DAP/reference | 0.95035 | 0.328 |
47DAP/reference | 1.04061 | 0.205 |
52DAP/reference | 0.93675 | 0.066 |
57DAP/reference | 1.00373 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95576 | 0.077 |
17DAP/reference | 0.99079 | 0.778 |
27DAP/reference | 0.98766 | 0.594 |
39DAP/reference | 0.94396 | 0.015 |
41DAP/reference | 0.99007 | 0.618 |
42DAP/reference | 0.8906 | 0.02 |
43DAP/reference | 0.95082 | 0.216 |
47DAP/reference | 0.95761 | 0.396 |
52DAP/reference | 1.00031 | 0.928 |
57DAP/reference | 0.90239 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99305 | 1 |
26DAP/20DAP | 1.10794 | 0.555 |
34DAP/26DAP | 1.09324 | 0.819 |
51DAP/34DAP | 1.01745 | 0.898 |
52DAP/51DAP | 1.04393 | 0.733 |
53DAP/52DAP | 1.04941 | 0.91 |
55DAP/53DAP | 1.26053 | 0.17 |
57DAP/55DAP | 1.00202 | 1 |
62DAP/57DAP | 1.05924 | 0.833 |
68DAP/62DAP | 1.08225 | 0.464 |
68DAP/14DAP | 1.25083 | 0.091 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.00818 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.19505 | 0.068 |
Mature Green Tomato/Ripe Tomato | 1.01045 | 0.898 |
Immature Eggplant/Mature Eggplant | 1.26804 | 0.205 |
Ripe Pepper/Ripe Tomato | 1.33422 | 1 |
Mature Eggplant/Ripe Tomato | 0.75967 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96348 | 0.944 |
1-1-2/M82 | 0.97179 | 1 |
12-2/M82 | 0.95544 | 0.955 |
12-4/M82 | 0.96059 | 1 |
1-3/M82 | 0.97372 | |
2-1-1/M82 | 0.88203 | 0.565 |
2-1/M82 | 1.35444 | 1 |
2-6/M82 | 0.9596 | 1 |
3-2/M82 | 0.9656 | 1 |
4-1-1/M82 | 1.06664 | 1 |
4-1/M82 | 0.98665 | 1 |
4-3-2/M82 | 0.93406 | 1 |
4-3/M82 | 0.94652 | 0.611 |
5-3/M82 | 0.98041 | 1 |
6-2/M82 | 0.99611 | 1 |
6-3/M82 | 1.02853 | 1 |
7-1/M82 | 1.04249 | 1 |
7-2/M82 | 0.99407 | 1 |
9-3-2/M82 | 0.84856 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.2167 | 0.247 |
IL2-6/WTpooled | 2.85092 | 0.395 |
IL7-5/WTpooled | 1.63661 | 0.75 |
IL7-3/WTpooled | 0.56549 | 0.294 |
IL12-4/WTpooled | 1.63504 | 0.785 |
IL1-4/WTpooled | 3.11472 | 1 |
WT/WTpooled | 1.01466 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02293 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98282 | 1 |
DC3000/delta hrp 6h | 1.25399 | 1 |
DC3000/delta hrp 12h | 0.96583 | 1 |
DC3000/delta hrp 24h | 1.02123 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12916 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.12701 | 0.358 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.2341 | 0.228 |
Exp 36h | 2.26938 | 0.409 |
Exp 60h | 1.56643 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99798 | 1 |
Var 0h | 1.03318 | 1 |
Var 12h I row2-row1 | 1.27703 | 0.228 |
Var 12h NI row2-row1 | 1.13676 | 0.649 |
Var 36h I row2-row1 | 1.03218 | 1 |
Var 36h NI row2-row1 | 0.88608 | 0.478 |
Var 60h I row2-row1 | 1.17208 | 0.562 |
Var 60h NI row2-row1 | 1.06133 | 1 |
Time course 0hI-0hNI | 0.98623 | 0.94 |
Time course 12hI-12hNI | 1.04353 | 0.786 |
Time course 36hI-36hNI | 1.02724 | 0.874 |
Time course 60hI-60hNI | 1.77375 | 0.017 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91144 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 1.26427 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.96015 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99968 | 0.967 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.2999 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.69195 | 0.333 |
Manapal/WT (red) | 0.85354 | 0.424 |
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