Expression of 1-1-4.3.15.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.092910.615
27DAP/17DAP1.01920.92
39DAP/27DAP1.021220.899
41DAP/39DAP1.030070.78
42DAP/41DAP0.881771
43DAP/42DAP0.992130.937
47DAP/43DAP1.146990.809
52DAP/47DAP0.838350.568
57DAP/52DAP0.946110.833

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.929230.162
17DAP/reference0.996630.904
27DAP/reference0.975620.275
39DAP/reference0.98560.72
41DAP/reference1.040160.552
42DAP/reference0.958370.048
43DAP/reference0.980070.631
47DAP/reference0.979090.3
52DAP/reference0.858130.118
57DAP/reference1.07050.321

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.015530.899
27DAP/17DAP0.979280.887
39DAP/27DAP0.959610.622
41DAP/39DAP0.974790.973
42DAP/41DAP1.056580.539
43DAP/42DAP1.002250.83
47DAP/43DAP0.914970.373
52DAP/47DAP0.925160.572
57DAP/52DAP0.994150.869
57DAP/7DAP0.86892

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.966980.326
17DAP/reference0.98170.338
27DAP/reference0.922240.031
39DAP/reference1.012790.909
41DAP/reference1.025620.678
42DAP/reference0.943330.095
43DAP/reference0.971750.334
47DAP/reference0.989620.671
52DAP/reference0.972020.278
57DAP/reference1.108820.308

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.00670.885
17DAP/reference0.983320.548
27DAP/reference0.945690.24
39DAP/reference0.922470.079
41DAP/reference0.902250.073
42DAP/reference0.987730.534
43DAP/reference0.950350.328
47DAP/reference1.040610.205
52DAP/reference0.936750.066
57DAP/reference1.003731

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.955760.077
17DAP/reference0.990790.778
27DAP/reference0.987660.594
39DAP/reference0.943960.015
41DAP/reference0.990070.618
42DAP/reference0.89060.02
43DAP/reference0.950820.216
47DAP/reference0.957610.396
52DAP/reference1.000310.928
57DAP/reference0.902390.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.993051
26DAP/20DAP1.107940.555
34DAP/26DAP1.093240.819
51DAP/34DAP1.017450.898
52DAP/51DAP1.043930.733
53DAP/52DAP1.049410.91
55DAP/53DAP1.260530.17
57DAP/55DAP1.002021
62DAP/57DAP1.059240.833
68DAP/62DAP1.082250.464
68DAP/14DAP1.250830.091

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.008181

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.195050.068
Mature Green Tomato/Ripe Tomato1.010450.898
Immature Eggplant/Mature Eggplant1.268040.205
Ripe Pepper/Ripe Tomato1.334221
Mature Eggplant/Ripe Tomato0.759671

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.963480.944
1-1-2/M820.971791
12-2/M820.955440.955
12-4/M820.960591
1-3/M820.97372
2-1-1/M820.882030.565
2-1/M821.354441
2-6/M820.95961
3-2/M820.96561
4-1-1/M821.066641
4-1/M820.986651
4-3-2/M820.934061
4-3/M820.946520.611
5-3/M820.980411
6-2/M820.996111
6-3/M821.028531
7-1/M821.042491
7-2/M820.994071
9-3-2/M820.848560.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.21670.247
IL2-6/WTpooled2.850920.395
IL7-5/WTpooled1.636610.75
IL7-3/WTpooled0.565490.294
IL12-4/WTpooled1.635040.785
IL1-4/WTpooled3.114721
WT/WTpooled1.014661

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.022931

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.982821
DC3000/delta hrp 6h1.253991
DC3000/delta hrp 12h0.965831
DC3000/delta hrp 24h1.021230.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.129160.145
DC3000 delta B/DC3000 delta AB1.127010.358

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.23410.228
Exp 36h2.269380.409
Exp 60h1.566430.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997981
Var 0h1.033181
Var 12h I row2-row11.277030.228
Var 12h NI row2-row11.136760.649
Var 36h I row2-row11.032181
Var 36h NI row2-row10.886080.478
Var 60h I row2-row11.172080.562
Var 60h NI row2-row11.061331
Time course 0hI-0hNI0.986230.94
Time course 12hI-12hNI1.043530.786
Time course 36hI-36hNI1.027240.874
Time course 60hI-60hNI1.773750.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.911440.529
transgenic ySAMdc/azygous control (breaker)1.264270.178
transgenic ySAMdc/azygous control (red)0.960151

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.999680.967

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.29991

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.691950.333
Manapal/WT (red)0.853540.424