Expression of 1-1-4.3.16.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0503 | 0.867 |
27DAP/17DAP | 1.16674 | 1 |
39DAP/27DAP | 2.15935 | 0.07 |
41DAP/39DAP | 0.8966 | 0.412 |
42DAP/41DAP | 0.89019 | 1 |
43DAP/42DAP | 2.18121 | 0.793 |
47DAP/43DAP | 1.0021 | 0.565 |
52DAP/47DAP | 3.26047 | 0.327 |
57DAP/52DAP | 1.32041 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93312 | 0.132 |
17DAP/reference | 0.92391 | 0.06 |
27DAP/reference | 0.99996 | 0.923 |
39DAP/reference | 0.98462 | 0.691 |
41DAP/reference | 0.88343 | 0.049 |
42DAP/reference | 1.0338 | 0.231 |
43DAP/reference | 0.98674 | 0.708 |
47DAP/reference | 0.94707 | 0.025 |
52DAP/reference | 0.99337 | 0.654 |
57DAP/reference | 1.04973 | 0.643 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.62984 | 0.064 |
27DAP/17DAP | 1.05174 | 0.932 |
39DAP/27DAP | 1.30361 | 0.154 |
41DAP/39DAP | 1.55315 | 0.024 |
42DAP/41DAP | 0.73216 | 0.042 |
43DAP/42DAP | 2.23023 | 0.013 |
47DAP/43DAP | 1.1686 | 0.121 |
52DAP/47DAP | 0.83919 | 0.233 |
57DAP/52DAP | 2.2566 | 0.029 |
57DAP/7DAP | 2.09609 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09507 | 0.332 |
17DAP/reference | 0.92 | 0.064 |
27DAP/reference | 0.84692 | 0.016 |
39DAP/reference | 0.98811 | 0.552 |
41DAP/reference | 1.03116 | 0.836 |
42DAP/reference | 1.03581 | 0.686 |
43DAP/reference | 1.47627 | 0.008 |
47DAP/reference | 1.11134 | 0.127 |
52DAP/reference | 1.04788 | 0.526 |
57DAP/reference | 1.09164 | 0.108 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98988 | 0.831 |
17DAP/reference | 0.99636 | 0.766 |
27DAP/reference | 0.8895 | 0.134 |
39DAP/reference | 0.89758 | 0.076 |
41DAP/reference | 1.01414 | 1 |
42DAP/reference | 0.9363 | 0.15 |
43DAP/reference | 1.10372 | 0.462 |
47DAP/reference | 0.99547 | 0.695 |
52DAP/reference | 1.01674 | 0.789 |
57DAP/reference | 0.99255 | 0.789 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05414 | 0.505 |
17DAP/reference | 0.97742 | 0.624 |
27DAP/reference | 0.96713 | 0.465 |
39DAP/reference | 0.85084 | 0.019 |
41DAP/reference | 0.87168 | 0.043 |
42DAP/reference | 0.90178 | 0.071 |
43DAP/reference | 0.85944 | 0.057 |
47DAP/reference | 1.00387 | 0.731 |
52DAP/reference | 0.98275 | 0.732 |
57DAP/reference | 0.8333 | 0.078 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95314 | 1 |
26DAP/20DAP | 0.87654 | 0.512 |
34DAP/26DAP | 0.93745 | 0.666 |
51DAP/34DAP | 0.94197 | 0.722 |
52DAP/51DAP | 1.19695 | 0.126 |
53DAP/52DAP | 1.10742 | 0.444 |
55DAP/53DAP | 1.04455 | 0.861 |
57DAP/55DAP | 1.11462 | 0.865 |
62DAP/57DAP | 1.10424 | 0.569 |
68DAP/62DAP | 0.82153 | 0.109 |
68DAP/14DAP | 0.68463 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.30929 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.97439 | |
Mature Green Tomato/Ripe Tomato | 0.20179 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.16003 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.19681 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03627 | 0.944 |
1-1-2/M82 | 0.93978 | 1 |
12-2/M82 | 1.10161 | 1 |
12-4/M82 | 1.11108 | 1 |
1-3/M82 | 0.82503 | 0.501 |
2-1-1/M82 | 1.28667 | |
2-1/M82 | 0.63462 | 0.74 |
2-6/M82 | 1.07142 | 0.695 |
3-2/M82 | 1.26099 | 0.419 |
4-1-1/M82 | 0.21078 | 0.985 |
4-1/M82 | 0.63122 | 0.998 |
4-3-2/M82 | 0.7452 | |
4-3/M82 | 1.31239 | 1 |
5-3/M82 | 1.62462 | 1 |
6-2/M82 | 1.05715 | 1 |
6-3/M82 | 1.34805 | 1 |
7-1/M82 | 1.2181 | 1 |
7-2/M82 | 1.27566 | 1 |
9-3-2/M82 | 0.61232 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.44921 | 0.531 |
IL1-4/WTpooled | 0.88204 | 0.415 |
WT/WTpooled | 0.96633 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.91657 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.45606 | 0.921 |
DC3000/delta hrp 6h | 0.79582 | 0.942 |
DC3000/delta hrp 12h | 1.0706 | 1 |
DC3000/delta hrp 24h | 0.86617 | 0.346 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.97536 | 0.826 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03044 | 1 |
Exp 36h | 1.41194 | 0.409 |
Exp 60h | 1.51724 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9887 | |
Var 0h | 0.7969 | 0.457 |
Var 12h I row2-row1 | 1.05382 | 0.736 |
Var 12h NI row2-row1 | 1.02124 | 1 |
Var 36h I row2-row1 | 1.17026 | 1 |
Var 36h NI row2-row1 | 0.89561 | 0.706 |
Var 60h I row2-row1 | 1.1819 | 1 |
Var 60h NI row2-row1 | 1.14736 | 0.904 |
Time course 0hI-0hNI | 1.14181 | 0.451 |
Time course 12hI-12hNI | 1.03077 | 0.777 |
Time course 36hI-36hNI | 1.00736 | 0.908 |
Time course 60hI-60hNI | 1.23554 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.39661 | 0.331 |
transgenic ySAMdc/azygous control (breaker) | 0.82695 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.9045 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04619 | 0.077 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.94338 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.33416 | 0.09 |
Manapal/WT (break) | 0.63903 | 0.333 |
Manapal/WT (red) | 1.44426 | 0.413 |
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