Expression of 1-1-4.3.16.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.124410.512
27DAP/17DAP1.14450.849
39DAP/27DAP0.967420.663
41DAP/39DAP1.377640.642
42DAP/41DAP1.28490.709
43DAP/42DAP1.117911
47DAP/43DAP1.206550.873
52DAP/47DAP0.784620.496
57DAP/52DAP1.061740.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.931360.224
17DAP/reference1.037570.143
27DAP/reference1.045010.271
39DAP/reference1.003270.903
41DAP/reference0.95250.542
42DAP/reference0.954060.069
43DAP/reference1.008541
47DAP/reference0.981120.258
52DAP/reference1.005490.73
57DAP/reference0.956760.395

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.994520.847
27DAP/17DAP1.011780.957
39DAP/27DAP1.016320.728
41DAP/39DAP1.03870.773
42DAP/41DAP0.951210.491
43DAP/42DAP1.015930.513
47DAP/43DAP1.002381
52DAP/47DAP0.996780.969
57DAP/52DAP1.000430.929
57DAP/7DAP1.022491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.057330.589
17DAP/reference1.047720.896
27DAP/reference1.077160.371
39DAP/reference1.0061
41DAP/reference1.320720.029
42DAP/reference1.076420.686
43DAP/reference1.077310.178
47DAP/reference0.978710.671
52DAP/reference1.206020.055
57DAP/reference1.107510.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.044550.863
17DAP/reference0.993070.711
27DAP/reference0.893950.104
39DAP/reference0.900540.129
41DAP/reference0.964450.384
42DAP/reference0.905560.098
43DAP/reference1.021770.745
47DAP/reference0.987560.487
52DAP/reference0.987290.576
57DAP/reference1.047580.296

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.096630.303
17DAP/reference0.973110.528
27DAP/reference0.995630.763
39DAP/reference1.045780.711
41DAP/reference1.026380.84
42DAP/reference0.971570.671
43DAP/reference1.027020.894
47DAP/reference1.013770.966
52DAP/reference1.066960.649
57DAP/reference0.929960.346

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.985311
26DAP/20DAP0.994361
34DAP/26DAP1.018061
51DAP/34DAP0.993640.927
52DAP/51DAP0.972181
53DAP/52DAP1.076860.662
55DAP/53DAP0.970160.632
57DAP/55DAP1.086090.694
62DAP/57DAP1.047360.723
68DAP/62DAP1.082430.689
68DAP/14DAP0.854720.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.006041

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.798520.058
Mature Green Tomato/Ripe Tomato0.825330.611
Immature Eggplant/Mature Eggplant1.089850.259
Ripe Pepper/Ripe Tomato0.44384
Mature Eggplant/Ripe Tomato0.70294

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.994461
1-1-2/M820.918421
12-2/M821.005791
12-4/M821.023140.461
1-3/M820.937650.378
2-1-1/M821.04191
2-1/M820.967741
2-6/M820.971940.501
3-2/M820.874621
4-1-1/M820.897931
4-1/M820.812621
4-3-2/M820.98277
4-3/M821.00511
5-3/M821.096271
6-2/M821.055991
6-3/M821.04371
7-1/M820.905890.803
7-2/M821.02011
9-3-2/M820.86359

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.129540.456
IL7-5/WTpooled1.22541
IL7-3/WTpooled1.269731
IL12-4/WTpooled1.221150.624
IL1-4/WTpooled1.011911
WT/WTpooled1.025411

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.87279

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.023940.921
DC3000/delta hrp 6h1.095561
DC3000/delta hrp 12h1.024721
DC3000/delta hrp 24h1.034430.655

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.122660.16
DC3000 delta B/DC3000 delta AB1.122550.298

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.116181
Exp 36h1.07571
Exp 60h1.241130.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.017041
Var 0h0.876711
Var 12h I row2-row11.163960.196
Var 12h NI row2-row10.963620.82
Var 36h I row2-row11.0541
Var 36h NI row2-row10.894990.478
Var 60h I row2-row11.101670.562
Var 60h NI row2-row11.074760.904
Time course 0hI-0hNI1.085380.764
Time course 12hI-12hNI1.035430.762
Time course 36hI-36hNI1.042440.513
Time course 60hI-60hNI1.245930.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.085710.612
transgenic ySAMdc/azygous control (breaker)0.68030.15
transgenic ySAMdc/azygous control (red)1.202120.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.016570.17

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.673610.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.710970.172
Manapal/WT (break)0.669630.333
Manapal/WT (red)1.073531