Expression of 1-1-4.3.16.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21879 | 0.827 |
27DAP/17DAP | 2.16559 | 0.215 |
39DAP/27DAP | 3.95017 | 0.026 |
41DAP/39DAP | 1.38388 | 0.504 |
42DAP/41DAP | 1.24403 | 0.582 |
43DAP/42DAP | 1.38761 | 0.823 |
47DAP/43DAP | 1.6413 | 0.213 |
52DAP/47DAP | 0.89987 | 0.702 |
57DAP/52DAP | 2.20525 | 0.731 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.59864 | 0.029 |
17DAP/reference | 0.64302 | 0.007 |
27DAP/reference | 0.75507 | 0.013 |
39DAP/reference | 1.13733 | 0.771 |
41DAP/reference | 0.83264 | 0.031 |
42DAP/reference | 1.37002 | 0.002 |
43DAP/reference | 1.18585 | 0.014 |
47DAP/reference | 2.10978 | 0.001 |
52DAP/reference | 1.56425 | 0.013 |
57DAP/reference | 1.56958 | 0.009 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.66283 | 0.65 |
27DAP/17DAP | 1.31896 | 0.794 |
39DAP/27DAP | 1.47338 | 0.603 |
41DAP/39DAP | 0.79416 | 0.465 |
42DAP/41DAP | 1.84341 | 0.327 |
43DAP/42DAP | 1.46678 | 0.072 |
47DAP/43DAP | 1.29829 | 0.221 |
52DAP/47DAP | 1.07438 | 0.991 |
57DAP/52DAP | 1.65555 | 0.274 |
57DAP/7DAP | 1.32267 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78129 | 0.088 |
17DAP/reference | 0.79515 | 0.072 |
27DAP/reference | 1.04875 | 0.664 |
39DAP/reference | 1.18288 | 0.12 |
41DAP/reference | 1.55902 | 0.01 |
42DAP/reference | 1.46855 | 0.016 |
43DAP/reference | 1.1896 | 0.188 |
47DAP/reference | 1.2431 | 0.124 |
52DAP/reference | 1.77205 | 0.009 |
57DAP/reference | 3.36453 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.49378 | 0.006 |
17DAP/reference | 0.45827 | 0.003 |
27DAP/reference | 0.74228 | 0.025 |
39DAP/reference | 0.82158 | 0.016 |
41DAP/reference | 1.08817 | 0.459 |
42DAP/reference | 1.06631 | 0.664 |
43DAP/reference | 0.75212 | 0.039 |
47DAP/reference | 2.95639 | 0.008 |
52DAP/reference | 1.11482 | 0.085 |
57DAP/reference | 1.27616 | 0.277 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9231 | 0.335 |
17DAP/reference | 0.77605 | 0.141 |
27DAP/reference | 0.91844 | 0.056 |
39DAP/reference | 1.36053 | 0.016 |
41DAP/reference | 1.25197 | 0.012 |
42DAP/reference | 1.35878 | 0.027 |
43DAP/reference | 1.38315 | 0.014 |
47DAP/reference | 2.53624 | 0.005 |
52DAP/reference | 2.8582 | 0.028 |
57DAP/reference | 1.67827 | 0.058 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08648 | 0.966 |
26DAP/20DAP | 1.32201 | 0.262 |
34DAP/26DAP | 1.91299 | 0.542 |
51DAP/34DAP | 3.21078 | 0.023 |
52DAP/51DAP | 0.69641 | 0.151 |
53DAP/52DAP | 1.70016 | 0.033 |
55DAP/53DAP | 0.42241 | 0.021 |
57DAP/55DAP | 0.73784 | 0.066 |
62DAP/57DAP | 2.77754 | 0.003 |
68DAP/62DAP | 1.0485 | 0.914 |
68DAP/14DAP | 3.27535 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.01026 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.02785 | 0.036 |
Mature Green Tomato/Ripe Tomato | 0.32128 | 0.019 |
Immature Eggplant/Mature Eggplant | 38.1683 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.33772 | 1 |
Mature Eggplant/Ripe Tomato | 0.51571 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87005 | 0.638 |
1-1-2/M82 | 1.38378 | 1 |
12-2/M82 | 1.04662 | 1 |
12-4/M82 | 1.17165 | 1 |
1-3/M82 | 5.36814 | 0.479 |
2-1-1/M82 | 1.02762 | 1 |
2-1/M82 | 1.0721 | 1 |
2-6/M82 | 1.31459 | 0.364 |
3-2/M82 | 1.21913 | 0.717 |
4-1-1/M82 | 2.18122 | 1 |
4-1/M82 | 1.24311 | 1 |
4-3-2/M82 | 2.37464 | 0.262 |
4-3/M82 | 1.07631 | 1 |
5-3/M82 | 0.54886 | 0.49 |
6-2/M82 | 0.6337 | 0.481 |
6-3/M82 | 1.01277 | 1 |
7-1/M82 | 0.94609 | 0.803 |
7-2/M82 | 2.55821 | 0.385 |
9-3-2/M82 | 2.40767 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.61009 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 0.83757 | 0.95 |
DC3000/delta hrp 12h | 1.03391 | 1 |
DC3000/delta hrp 24h | 0.73607 | 0.143 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 2.98807 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04967 | 1 |
Exp 36h | 1.15995 | 1 |
Exp 60h | 1.0323 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99408 | 1 |
Var 0h | 0.85533 | 0.933 |
Var 12h I row2-row1 | 0.86314 | 0.77 |
Var 12h NI row2-row1 | 1.96994 | 0.649 |
Var 36h I row2-row1 | 1.09331 | 1 |
Var 36h NI row2-row1 | 0.92276 | 0.791 |
Var 60h I row2-row1 | 0.50376 | 0.285 |
Var 60h NI row2-row1 | 0.56889 | 0.292 |
Time course 0hI-0hNI | 1.06087 | 0.852 |
Time course 12hI-12hNI | 1.66808 | 0.04 |
Time course 36hI-36hNI | 3.9531 | 0.005 |
Time course 60hI-60hNI | 20.4778 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.62925 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 0.89369 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.26322 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.68313 | 0.061 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.66549 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 5.77323 | 0.105 |
Manapal/WT (break) | 6.54448 | 0.14 |
Manapal/WT (red) | 1.80174 | 0.15 |
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