Expression of 1-1-4.3.16.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.218790.827
27DAP/17DAP2.165590.215
39DAP/27DAP3.950170.026
41DAP/39DAP1.383880.504
42DAP/41DAP1.244030.582
43DAP/42DAP1.387610.823
47DAP/43DAP1.64130.213
52DAP/47DAP0.899870.702
57DAP/52DAP2.205250.731

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.598640.029
17DAP/reference0.643020.007
27DAP/reference0.755070.013
39DAP/reference1.137330.771
41DAP/reference0.832640.031
42DAP/reference1.370020.002
43DAP/reference1.185850.014
47DAP/reference2.109780.001
52DAP/reference1.564250.013
57DAP/reference1.569580.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.662830.65
27DAP/17DAP1.318960.794
39DAP/27DAP1.473380.603
41DAP/39DAP0.794160.465
42DAP/41DAP1.843410.327
43DAP/42DAP1.466780.072
47DAP/43DAP1.298290.221
52DAP/47DAP1.074380.991
57DAP/52DAP1.655550.274
57DAP/7DAP1.32267

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.781290.088
17DAP/reference0.795150.072
27DAP/reference1.048750.664
39DAP/reference1.182880.12
41DAP/reference1.559020.01
42DAP/reference1.468550.016
43DAP/reference1.18960.188
47DAP/reference1.24310.124
52DAP/reference1.772050.009
57DAP/reference3.364530.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.493780.006
17DAP/reference0.458270.003
27DAP/reference0.742280.025
39DAP/reference0.821580.016
41DAP/reference1.088170.459
42DAP/reference1.066310.664
43DAP/reference0.752120.039
47DAP/reference2.956390.008
52DAP/reference1.114820.085
57DAP/reference1.276160.277

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92310.335
17DAP/reference0.776050.141
27DAP/reference0.918440.056
39DAP/reference1.360530.016
41DAP/reference1.251970.012
42DAP/reference1.358780.027
43DAP/reference1.383150.014
47DAP/reference2.536240.005
52DAP/reference2.85820.028
57DAP/reference1.678270.058

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.086480.966
26DAP/20DAP1.322010.262
34DAP/26DAP1.912990.542
51DAP/34DAP3.210780.023
52DAP/51DAP0.696410.151
53DAP/52DAP1.700160.033
55DAP/53DAP0.422410.021
57DAP/55DAP0.737840.066
62DAP/57DAP2.777540.003
68DAP/62DAP1.04850.914
68DAP/14DAP3.275350.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.010261

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.027850.036
Mature Green Tomato/Ripe Tomato0.321280.019
Immature Eggplant/Mature Eggplant38.16830.05
Ripe Pepper/Ripe Tomato2.337721
Mature Eggplant/Ripe Tomato0.515711

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.870050.638
1-1-2/M821.383781
12-2/M821.046621
12-4/M821.171651
1-3/M825.368140.479
2-1-1/M821.027621
2-1/M821.07211
2-6/M821.314590.364
3-2/M821.219130.717
4-1-1/M822.181221
4-1/M821.243111
4-3-2/M822.374640.262
4-3/M821.076311
5-3/M820.548860.49
6-2/M820.63370.481
6-3/M821.012771
7-1/M820.946090.803
7-2/M822.558210.385
9-3-2/M822.407671

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.610090.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h0.837570.95
DC3000/delta hrp 12h1.033911
DC3000/delta hrp 24h0.736070.143

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB2.988070.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.049671
Exp 36h1.159951
Exp 60h1.03231

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.994081
Var 0h0.855330.933
Var 12h I row2-row10.863140.77
Var 12h NI row2-row11.969940.649
Var 36h I row2-row11.093311
Var 36h NI row2-row10.922760.791
Var 60h I row2-row10.503760.285
Var 60h NI row2-row10.568890.292
Time course 0hI-0hNI1.060870.852
Time course 12hI-12hNI1.668080.04
Time course 36hI-36hNI3.95310.005
Time course 60hI-60hNI20.47780.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.629250.314
transgenic ySAMdc/azygous control (breaker)0.893690.15
transgenic ySAMdc/azygous control (red)1.263220.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.683130.061

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.665490.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)5.773230.105
Manapal/WT (break)6.544480.14
Manapal/WT (red)1.801740.15