Expression of 1-1-4.3.17.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93191 | 0.627 |
27DAP/17DAP | 1.94514 | 0.187 |
39DAP/27DAP | 1.22036 | 0.618 |
41DAP/39DAP | 1.0999 | 0.96 |
42DAP/41DAP | 1.35506 | 0.777 |
43DAP/42DAP | 1.13942 | 1 |
47DAP/43DAP | 0.71368 | 0.239 |
52DAP/47DAP | 1.2073 | 0.91 |
57DAP/52DAP | 0.86319 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14082 | 0.662 |
17DAP/reference | 1.12903 | 0.074 |
27DAP/reference | 1.35981 | 0.033 |
39DAP/reference | 1.21001 | 0.111 |
41DAP/reference | 1.2411 | 0.034 |
42DAP/reference | 1.50311 | 0.003 |
43DAP/reference | 1.29171 | 0.047 |
47DAP/reference | 1.4417 | 0.003 |
52DAP/reference | 1.82423 | 0.007 |
57DAP/reference | 1.6902 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07088 | 0.508 |
27DAP/17DAP | 1.1989 | 0.453 |
39DAP/27DAP | 1.92457 | 0.053 |
41DAP/39DAP | 0.67491 | 0.022 |
42DAP/41DAP | 1.27531 | 0.006 |
43DAP/42DAP | 1.20613 | 0.324 |
47DAP/43DAP | 0.79827 | 0.319 |
52DAP/47DAP | 1.37732 | 0.186 |
57DAP/52DAP | 1.19267 | 0.358 |
57DAP/7DAP | 0.85405 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.67576 | 0.129 |
17DAP/reference | 0.7274 | 0.011 |
27DAP/reference | 0.8763 | 0.094 |
39DAP/reference | 1.31368 | 0.026 |
41DAP/reference | 0.95306 | 0.412 |
42DAP/reference | 1.03686 | 1 |
43DAP/reference | 1.28386 | 0.041 |
47DAP/reference | 1.60456 | 0.099 |
52DAP/reference | 1.16322 | 0.247 |
57DAP/reference | 1.1099 | 0.571 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8333 | 0.238 |
17DAP/reference | 0.95866 | 0.523 |
27DAP/reference | 1.12949 | 0.875 |
39DAP/reference | 1.10411 | 0.956 |
41DAP/reference | 1.37672 | 0.06 |
42DAP/reference | 1.25372 | 0.053 |
43DAP/reference | 0.94218 | 0.459 |
47DAP/reference | 1.25184 | 0.021 |
52DAP/reference | 1.16809 | 0.444 |
57DAP/reference | 1.13117 | 0.208 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76635 | 0.038 |
17DAP/reference | 0.98355 | 0.668 |
27DAP/reference | 0.80217 | 0.089 |
39DAP/reference | 1.0557 | 0.935 |
41DAP/reference | 0.95192 | 0.459 |
42DAP/reference | 1.17426 | 0.34 |
43DAP/reference | 1.55769 | 0.042 |
47DAP/reference | 1.23291 | 0.018 |
52DAP/reference | 1.14917 | 0.705 |
57DAP/reference | 1.88664 | 0.022 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.48028 | 0.023 |
26DAP/20DAP | 1.11714 | 0.683 |
34DAP/26DAP | 1.58411 | 0.092 |
51DAP/34DAP | 1.41584 | 0.058 |
52DAP/51DAP | 0.92952 | 1 |
53DAP/52DAP | 0.87843 | 0.572 |
55DAP/53DAP | 1.01822 | 0.917 |
57DAP/55DAP | 0.76419 | 0.202 |
62DAP/57DAP | 0.98774 | 0.994 |
68DAP/62DAP | 4.06054 | 0.091 |
68DAP/14DAP | 2.67954 | 0.071 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.70084 | 0.097 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.11263 | 0.049 |
Mature Green Tomato/Ripe Tomato | 1.47885 | 0.134 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 2.03988 | 1 |
Mature Eggplant/Ripe Tomato | 0.78033 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 2.04954 | 0.574 |
1-1-2/M82 | 1.03696 | 1 |
12-2/M82 | 1.01616 | 1 |
12-4/M82 | 1.09065 | 1 |
1-3/M82 | 2.23266 | 0.277 |
2-1-1/M82 | 1.17347 | |
2-1/M82 | 1.31735 | 0.32 |
2-6/M82 | 1.03228 | 1 |
3-2/M82 | 5.10054 | 0.463 |
4-1-1/M82 | 0.54155 | |
4-1/M82 | 1.27265 | 0.853 |
4-3-2/M82 | 0.83591 | 0.698 |
4-3/M82 | 0.78119 | 1 |
5-3/M82 | 1.14567 | 1 |
6-2/M82 | 2.34132 | 0.235 |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.86724 | |
7-2/M82 | 1.04485 | |
9-3-2/M82 | 1.08394 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05765 | 1 |
IL2-6/WTpooled | 0.84628 | 1 |
IL7-5/WTpooled | 0.87402 | |
IL7-3/WTpooled | 1.00317 | 1 |
IL12-4/WTpooled | 1.1137 | 0.624 |
IL1-4/WTpooled | 0.92176 | 1 |
WT/WTpooled | 1.05823 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02109 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.2479 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 2.5006 | |
DC3000/delta hrp 24h | 1.14073 | 0.264 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.14629 | |
DC3000 delta B/DC3000 delta AB | 1.01468 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.10524 | 1 |
Var 0h | 0.69468 | 1 |
Var 12h I row2-row1 | 0.85641 | 0.467 |
Var 12h NI row2-row1 | 0.90876 | 0.713 |
Var 36h I row2-row1 | 0.84064 | 1 |
Var 36h NI row2-row1 | 1.05529 | 1 |
Var 60h I row2-row1 | 0.98509 | 0.952 |
Var 60h NI row2-row1 | 1.02339 | 1 |
Time course 0hI-0hNI | 1.00495 | 0.867 |
Time course 12hI-12hNI | 0.91964 | 0.375 |
Time course 36hI-36hNI | 0.78626 | 0.023 |
Time course 60hI-60hNI | 0.38647 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.64369 | 0.289 |
transgenic ySAMdc/azygous control (breaker) | 1.64052 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.12884 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.34499 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.98406 | 0.14 |
Manapal/WT (break) | 0.70637 | 0.333 |
Manapal/WT (red) | 0.86271 | 0.503 |
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