Expression of 1-1-4.3.17.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97825 | 0.779 |
27DAP/17DAP | 0.88279 | 0.725 |
39DAP/27DAP | 1.12895 | 0.981 |
41DAP/39DAP | 0.99296 | 0.837 |
42DAP/41DAP | 0.93186 | 1 |
43DAP/42DAP | 1.08556 | 1 |
47DAP/43DAP | 1.31447 | 0.538 |
52DAP/47DAP | 1.0546 | 0.953 |
57DAP/52DAP | 1.21525 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84835 | 0.154 |
17DAP/reference | 0.56095 | 0.007 |
27DAP/reference | 0.88483 | 0.265 |
39DAP/reference | 0.68839 | 0.013 |
41DAP/reference | 0.52091 | 0.008 |
42DAP/reference | 0.87917 | 0.107 |
43DAP/reference | 0.82156 | 0.02 |
47DAP/reference | 1.02065 | 0.535 |
52DAP/reference | 1.68933 | 0.045 |
57DAP/reference | 1.6629 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97814 | 0.716 |
27DAP/17DAP | 1.01254 | 0.969 |
39DAP/27DAP | 1.11864 | 0.565 |
41DAP/39DAP | 1.05307 | 0.896 |
42DAP/41DAP | 1.1387 | 0.593 |
43DAP/42DAP | 0.86833 | 0.082 |
47DAP/43DAP | 1.00975 | 0.963 |
52DAP/47DAP | 1.06348 | 0.734 |
57DAP/52DAP | 1.09702 | 0.466 |
57DAP/7DAP | 1.43485 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08752 | 0.501 |
17DAP/reference | 1.08514 | 0.627 |
27DAP/reference | 1.16347 | 0.088 |
39DAP/reference | 1.16642 | 0.21 |
41DAP/reference | 1.21048 | 0.184 |
42DAP/reference | 1.30543 | 0.076 |
43DAP/reference | 1.07816 | 0.83 |
47DAP/reference | 1.25239 | 0.142 |
52DAP/reference | 1.12226 | 0.013 |
57DAP/reference | 1.0265 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74496 | 0.115 |
17DAP/reference | 0.5063 | 0.004 |
27DAP/reference | 0.91705 | 0.317 |
39DAP/reference | 1.10014 | 1 |
41DAP/reference | 1.30456 | 0.03 |
42DAP/reference | 1.10494 | 0.195 |
43DAP/reference | 0.73898 | 0.064 |
47DAP/reference | 0.80643 | 0.026 |
52DAP/reference | 0.89615 | 0.043 |
57DAP/reference | 0.45624 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96575 | 0.489 |
17DAP/reference | 0.96909 | 0.636 |
27DAP/reference | 0.99279 | 0.727 |
39DAP/reference | 1.1139 | 0.437 |
41DAP/reference | 0.88028 | 0.185 |
42DAP/reference | 1.47064 | 0.106 |
43DAP/reference | 1.32092 | 0.655 |
47DAP/reference | 1.02781 | 0.61 |
52DAP/reference | 1.20215 | 0.324 |
57DAP/reference | 3.26957 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92099 | 1 |
26DAP/20DAP | 1.9935 | 0.099 |
34DAP/26DAP | 0.85958 | 0.448 |
51DAP/34DAP | 1.42566 | 0.044 |
52DAP/51DAP | 0.96544 | 1 |
53DAP/52DAP | 1.0381 | 0.895 |
55DAP/53DAP | 0.80598 | 0.077 |
57DAP/55DAP | 0.93803 | 0.468 |
62DAP/57DAP | 0.9179 | 0.871 |
68DAP/62DAP | 5.58973 | 0.135 |
68DAP/14DAP | 8.98867 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.66812 | 0.036 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.78896 | 0.245 |
Mature Green Tomato/Ripe Tomato | 1.06727 | 1 |
Immature Eggplant/Mature Eggplant | 1.22321 | 0.067 |
Ripe Pepper/Ripe Tomato | 0.86097 | 1 |
Mature Eggplant/Ripe Tomato | 0.85352 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.75478 | 0.402 |
1-1-2/M82 | 0.98164 | 1 |
12-2/M82 | 0.86585 | 0.955 |
12-4/M82 | 0.70802 | 0.619 |
1-3/M82 | 1.00002 | 1 |
2-1-1/M82 | 0.77012 | 0.784 |
2-1/M82 | 1.17968 | 0.345 |
2-6/M82 | 0.81794 | 1 |
3-2/M82 | 1.51337 | |
4-1-1/M82 | 0.98233 | 1 |
4-1/M82 | 1.11885 | |
4-3-2/M82 | 0.6522 | 0.487 |
4-3/M82 | 0.9355 | 1 |
5-3/M82 | 1.24533 | 0.572 |
6-2/M82 | 0.78381 | |
6-3/M82 | 1.03225 | 1 |
7-1/M82 | 1.01362 | 1 |
7-2/M82 | 1.20754 | 1 |
9-3-2/M82 | 0.9495 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.6056 | 0.277 |
IL2-6/WTpooled | 0.56996 | 0.473 |
IL7-5/WTpooled | 0.80518 | 1 |
IL7-3/WTpooled | 1.86847 | 1 |
IL12-4/WTpooled | 1.12431 | 0.839 |
IL1-4/WTpooled | 1.367 | 0.399 |
WT/WTpooled | 1.09639 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06101 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11064 | 0.921 |
DC3000/delta hrp 6h | 0.96482 | 0.95 |
DC3000/delta hrp 12h | 0.87147 | 1 |
DC3000/delta hrp 24h | 1.09677 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.41036 | 0.11 |
DC3000 delta B/DC3000 delta AB | 1.63135 | 0.083 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1494 | 0.254 |
Exp 36h | 1.12443 | 1 |
Exp 60h | 1.28709 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97946 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.01167 | 1 |
Var 12h NI row2-row1 | 1.44902 | 1 |
Var 36h I row2-row1 | 1.17925 | 0.368 |
Var 36h NI row2-row1 | 0.83762 | 0.375 |
Var 60h I row2-row1 | 0.77887 | 0.285 |
Var 60h NI row2-row1 | 1.01314 | 1 |
Time course 0hI-0hNI | 0.92671 | 0.548 |
Time course 12hI-12hNI | 1.09844 | 0.317 |
Time course 36hI-36hNI | 1.62943 | 0.005 |
Time course 60hI-60hNI | 3.46677 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02616 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.16302 | 1 |
transgenic ySAMdc/azygous control (red) | 1.04612 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.97806 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84424 | 1 |
Manapal/WT (break) | 0.97389 | 1 |
Manapal/WT (red) | 0.71607 | 0.199 |
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