Expression of 1-1-4.3.17.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.978250.779
27DAP/17DAP0.882790.725
39DAP/27DAP1.128950.981
41DAP/39DAP0.992960.837
42DAP/41DAP0.931861
43DAP/42DAP1.085561
47DAP/43DAP1.314470.538
52DAP/47DAP1.05460.953
57DAP/52DAP1.215250.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.848350.154
17DAP/reference0.560950.007
27DAP/reference0.884830.265
39DAP/reference0.688390.013
41DAP/reference0.520910.008
42DAP/reference0.879170.107
43DAP/reference0.821560.02
47DAP/reference1.020650.535
52DAP/reference1.689330.045
57DAP/reference1.66290.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.978140.716
27DAP/17DAP1.012540.969
39DAP/27DAP1.118640.565
41DAP/39DAP1.053070.896
42DAP/41DAP1.13870.593
43DAP/42DAP0.868330.082
47DAP/43DAP1.009750.963
52DAP/47DAP1.063480.734
57DAP/52DAP1.097020.466
57DAP/7DAP1.434851

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.087520.501
17DAP/reference1.085140.627
27DAP/reference1.163470.088
39DAP/reference1.166420.21
41DAP/reference1.210480.184
42DAP/reference1.305430.076
43DAP/reference1.078160.83
47DAP/reference1.252390.142
52DAP/reference1.122260.013
57DAP/reference1.02651

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.744960.115
17DAP/reference0.50630.004
27DAP/reference0.917050.317
39DAP/reference1.100141
41DAP/reference1.304560.03
42DAP/reference1.104940.195
43DAP/reference0.738980.064
47DAP/reference0.806430.026
52DAP/reference0.896150.043
57DAP/reference0.456240.004

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965750.489
17DAP/reference0.969090.636
27DAP/reference0.992790.727
39DAP/reference1.11390.437
41DAP/reference0.880280.185
42DAP/reference1.470640.106
43DAP/reference1.320920.655
47DAP/reference1.027810.61
52DAP/reference1.202150.324
57DAP/reference3.269570.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.920991
26DAP/20DAP1.99350.099
34DAP/26DAP0.859580.448
51DAP/34DAP1.425660.044
52DAP/51DAP0.965441
53DAP/52DAP1.03810.895
55DAP/53DAP0.805980.077
57DAP/55DAP0.938030.468
62DAP/57DAP0.91790.871
68DAP/62DAP5.589730.135
68DAP/14DAP8.988670.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.668120.036

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.788960.245
Mature Green Tomato/Ripe Tomato1.067271
Immature Eggplant/Mature Eggplant1.223210.067
Ripe Pepper/Ripe Tomato0.860971
Mature Eggplant/Ripe Tomato0.853521

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.754780.402
1-1-2/M820.981641
12-2/M820.865850.955
12-4/M820.708020.619
1-3/M821.000021
2-1-1/M820.770120.784
2-1/M821.179680.345
2-6/M820.817941
3-2/M821.51337
4-1-1/M820.982331
4-1/M821.11885
4-3-2/M820.65220.487
4-3/M820.93551
5-3/M821.245330.572
6-2/M820.78381
6-3/M821.032251
7-1/M821.013621
7-2/M821.207541
9-3-2/M820.94950.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.60560.277
IL2-6/WTpooled0.569960.473
IL7-5/WTpooled0.805181
IL7-3/WTpooled1.868471
IL12-4/WTpooled1.124310.839
IL1-4/WTpooled1.3670.399
WT/WTpooled1.096391

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.061011

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.110640.921
DC3000/delta hrp 6h0.964820.95
DC3000/delta hrp 12h0.871471
DC3000/delta hrp 24h1.096770.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.410360.11
DC3000 delta B/DC3000 delta AB1.631350.083

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.14940.254
Exp 36h1.124431
Exp 60h1.287090.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.979461
Var 0hN/AN/A
Var 12h I row2-row11.011671
Var 12h NI row2-row11.449021
Var 36h I row2-row11.179250.368
Var 36h NI row2-row10.837620.375
Var 60h I row2-row10.778870.285
Var 60h NI row2-row11.013141
Time course 0hI-0hNI0.926710.548
Time course 12hI-12hNI1.098440.317
Time course 36hI-36hNI1.629430.005
Time course 60hI-60hNI3.466770.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.026160.748
transgenic ySAMdc/azygous control (breaker)1.163021
transgenic ySAMdc/azygous control (red)1.046121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.978060.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.844241
Manapal/WT (break)0.973891
Manapal/WT (red)0.716070.199