Expression of 1-1-4.3.19.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86651 | 0.395 |
27DAP/17DAP | 0.83548 | 0.558 |
39DAP/27DAP | 0.91833 | 0.641 |
41DAP/39DAP | 0.80082 | 0.32 |
42DAP/41DAP | 1.70752 | 0.147 |
43DAP/42DAP | 1.08198 | 0.945 |
47DAP/43DAP | 1.10223 | 0.769 |
52DAP/47DAP | 0.80617 | 0.545 |
57DAP/52DAP | 1.20938 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44993 | 0.025 |
17DAP/reference | 1.43579 | 0.014 |
27DAP/reference | 1.21122 | 0.087 |
39DAP/reference | 1.18527 | 0.153 |
41DAP/reference | 1.75305 | 0.013 |
42DAP/reference | 1.35179 | 0.001 |
43DAP/reference | 1.09108 | 0.495 |
47DAP/reference | 1.20474 | 0.011 |
52DAP/reference | 1.14885 | 0.134 |
57DAP/reference | 0.97922 | 0.58 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16246 | 0.774 |
27DAP/17DAP | 0.9054 | 0.58 |
39DAP/27DAP | 0.95221 | 0.775 |
41DAP/39DAP | 0.85439 | 0.42 |
42DAP/41DAP | 1.16315 | 0.446 |
43DAP/42DAP | 1.10231 | 0.25 |
47DAP/43DAP | 0.93326 | 0.637 |
52DAP/47DAP | 1.32129 | 0.296 |
57DAP/52DAP | 1.47107 | 0.08 |
57DAP/7DAP | 1.19168 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08389 | 0.638 |
17DAP/reference | 1.05022 | 1 |
27DAP/reference | 1.28651 | 0.131 |
39DAP/reference | 1.30452 | 0.028 |
41DAP/reference | 1.56406 | 0.019 |
42DAP/reference | 1.60563 | 0.008 |
43DAP/reference | 1.08957 | 0.537 |
47DAP/reference | 1.17165 | 0.247 |
52DAP/reference | 1.23008 | 0.212 |
57DAP/reference | 1.20473 | 0.288 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20878 | 0.343 |
17DAP/reference | 1.67764 | 0.012 |
27DAP/reference | 1.53411 | 0.015 |
39DAP/reference | 1.35547 | 0.015 |
41DAP/reference | 1.18787 | 0.177 |
42DAP/reference | 1.38193 | 0.011 |
43DAP/reference | 1.30704 | 0.211 |
47DAP/reference | 1.17251 | 0.021 |
52DAP/reference | 1.51374 | 0.006 |
57DAP/reference | 1.64288 | 0.019 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11532 | 0.347 |
17DAP/reference | 1.20086 | 0.133 |
27DAP/reference | 1.28508 | 0.031 |
39DAP/reference | 1.16542 | 0.108 |
41DAP/reference | 1.04208 | 0.754 |
42DAP/reference | 1.18453 | 0.103 |
43DAP/reference | 1.15307 | 0.49 |
47DAP/reference | 1.00152 | 0.646 |
52DAP/reference | 1.22138 | 0.284 |
57DAP/reference | 0.95273 | 0.41 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94439 | 1 |
26DAP/20DAP | 0.81259 | 0.244 |
34DAP/26DAP | 1.24733 | 0.542 |
51DAP/34DAP | 1.31072 | 0.429 |
52DAP/51DAP | 1.32751 | 0.066 |
53DAP/52DAP | 0.90898 | 0.581 |
55DAP/53DAP | 1.48448 | 0.048 |
57DAP/55DAP | 0.95113 | 0.633 |
62DAP/57DAP | 1.40708 | 0.445 |
68DAP/62DAP | 0.74979 | 0.429 |
68DAP/14DAP | 0.77442 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.6539 | 0.039 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.67621 | 0.17 |
Mature Green Tomato/Ripe Tomato | 0.69073 | 0.119 |
Immature Eggplant/Mature Eggplant | 1.3051 | 0.136 |
Ripe Pepper/Ripe Tomato | 2.33096 | 1 |
Mature Eggplant/Ripe Tomato | 1.77279 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03859 | 1 |
1-1-2/M82 | 0.8605 | |
12-2/M82 | 0.88036 | 0.955 |
12-4/M82 | 0.85915 | 0.282 |
1-3/M82 | 1.46599 | |
2-1-1/M82 | 0.72505 | |
2-1/M82 | 0.90421 | |
2-6/M82 | 1.00063 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.18558 | 0.977 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.16947 | |
4-3/M82 | 1.21156 | 1 |
5-3/M82 | 1.331 | |
6-2/M82 | 1.2991 | |
6-3/M82 | 0.74135 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.11975 | 1 |
9-3-2/M82 | 1.14073 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.92333 | |
IL2-6/WTpooled | 1.12099 | 0.456 |
IL7-5/WTpooled | 1.19432 | |
IL7-3/WTpooled | 0.7742 | 0.418 |
IL12-4/WTpooled | 0.95586 | 1 |
IL1-4/WTpooled | 1.02437 | 1 |
WT/WTpooled | 0.87289 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.85223 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02887 | 0.921 |
DC3000/delta hrp 6h | 0.9692 | 0.95 |
DC3000/delta hrp 12h | 1.16876 | 1 |
DC3000/delta hrp 24h | 1.02225 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.59202 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.69334 | 0.022 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04072 | 1 |
Exp 36h | 1.32236 | 0.326 |
Exp 60h | 1.34262 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99602 | 1 |
Var 0h | 0.8163 | 0.933 |
Var 12h I row2-row1 | 0.87017 | 0.338 |
Var 12h NI row2-row1 | 1.0042 | 1 |
Var 36h I row2-row1 | 0.89404 | 1 |
Var 36h NI row2-row1 | 0.93282 | 0.706 |
Var 60h I row2-row1 | 0.97246 | 0.582 |
Var 60h NI row2-row1 | 0.93591 | 1 |
Time course 0hI-0hNI | 1.06592 | 0.764 |
Time course 12hI-12hNI | 0.96449 | 0.739 |
Time course 36hI-36hNI | 0.98606 | 0.621 |
Time course 60hI-60hNI | 0.61974 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93959 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 0.8826 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.9049 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.85676 | 0.128 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.63841 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.47805 | 0.172 |
Manapal/WT (break) | 0.67091 | 0.333 |
Manapal/WT (red) | 0.964 | 0.728 |
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