Expression of 1-1-4.3.19.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.866510.395
27DAP/17DAP0.835480.558
39DAP/27DAP0.918330.641
41DAP/39DAP0.800820.32
42DAP/41DAP1.707520.147
43DAP/42DAP1.081980.945
47DAP/43DAP1.102230.769
52DAP/47DAP0.806170.545
57DAP/52DAP1.209380.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.449930.025
17DAP/reference1.435790.014
27DAP/reference1.211220.087
39DAP/reference1.185270.153
41DAP/reference1.753050.013
42DAP/reference1.351790.001
43DAP/reference1.091080.495
47DAP/reference1.204740.011
52DAP/reference1.148850.134
57DAP/reference0.979220.58

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.162460.774
27DAP/17DAP0.90540.58
39DAP/27DAP0.952210.775
41DAP/39DAP0.854390.42
42DAP/41DAP1.163150.446
43DAP/42DAP1.102310.25
47DAP/43DAP0.933260.637
52DAP/47DAP1.321290.296
57DAP/52DAP1.471070.08
57DAP/7DAP1.191681

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.083890.638
17DAP/reference1.050221
27DAP/reference1.286510.131
39DAP/reference1.304520.028
41DAP/reference1.564060.019
42DAP/reference1.605630.008
43DAP/reference1.089570.537
47DAP/reference1.171650.247
52DAP/reference1.230080.212
57DAP/reference1.204730.288

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.208780.343
17DAP/reference1.677640.012
27DAP/reference1.534110.015
39DAP/reference1.355470.015
41DAP/reference1.187870.177
42DAP/reference1.381930.011
43DAP/reference1.307040.211
47DAP/reference1.172510.021
52DAP/reference1.513740.006
57DAP/reference1.642880.019

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.115320.347
17DAP/reference1.200860.133
27DAP/reference1.285080.031
39DAP/reference1.165420.108
41DAP/reference1.042080.754
42DAP/reference1.184530.103
43DAP/reference1.153070.49
47DAP/reference1.001520.646
52DAP/reference1.221380.284
57DAP/reference0.952730.41

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.944391
26DAP/20DAP0.812590.244
34DAP/26DAP1.247330.542
51DAP/34DAP1.310720.429
52DAP/51DAP1.327510.066
53DAP/52DAP0.908980.581
55DAP/53DAP1.484480.048
57DAP/55DAP0.951130.633
62DAP/57DAP1.407080.445
68DAP/62DAP0.749790.429
68DAP/14DAP0.774420.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.65390.039

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.676210.17
Mature Green Tomato/Ripe Tomato0.690730.119
Immature Eggplant/Mature Eggplant1.30510.136
Ripe Pepper/Ripe Tomato2.330961
Mature Eggplant/Ripe Tomato1.772791

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.038591
1-1-2/M820.8605
12-2/M820.880360.955
12-4/M820.859150.282
1-3/M821.46599
2-1-1/M820.72505
2-1/M820.90421
2-6/M821.000631
3-2/M82N/AN/A
4-1-1/M821.185580.977
4-1/M82N/AN/A
4-3-2/M821.16947
4-3/M821.211561
5-3/M821.331
6-2/M821.2991
6-3/M820.741351
7-1/M82N/AN/A
7-2/M821.119751
9-3-2/M821.14073

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.92333
IL2-6/WTpooled1.120990.456
IL7-5/WTpooled1.19432
IL7-3/WTpooled0.77420.418
IL12-4/WTpooled0.955861
IL1-4/WTpooled1.024371
WT/WTpooled0.872891

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.852230.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.028870.921
DC3000/delta hrp 6h0.96920.95
DC3000/delta hrp 12h1.168761
DC3000/delta hrp 24h1.022251

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.592020.023
DC3000 delta B/DC3000 delta AB0.693340.022

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.040721
Exp 36h1.322360.326
Exp 60h1.342620.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996021
Var 0h0.81630.933
Var 12h I row2-row10.870170.338
Var 12h NI row2-row11.00421
Var 36h I row2-row10.894041
Var 36h NI row2-row10.932820.706
Var 60h I row2-row10.972460.582
Var 60h NI row2-row10.935911
Time course 0hI-0hNI1.065920.764
Time course 12hI-12hNI0.964490.739
Time course 36hI-36hNI0.986060.621
Time course 60hI-60hNI0.619740.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.939590.485
transgenic ySAMdc/azygous control (breaker)0.88260.49
transgenic ySAMdc/azygous control (red)0.90491

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.856760.128

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.638410.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.478050.172
Manapal/WT (break)0.670910.333
Manapal/WT (red)0.9640.728