Expression of 1-1-4.3.19.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11509 | 0.904 |
27DAP/17DAP | 0.87099 | 0.779 |
39DAP/27DAP | 0.96824 | 0.7 |
41DAP/39DAP | 0.96296 | 0.795 |
42DAP/41DAP | 0.76374 | 1 |
43DAP/42DAP | 0.89692 | 0.813 |
47DAP/43DAP | 0.98825 | 0.804 |
52DAP/47DAP | 1.21012 | 0.787 |
57DAP/52DAP | 0.84039 | 0.605 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00133 | 1 |
17DAP/reference | 0.93245 | 0.224 |
27DAP/reference | 0.97012 | 0.444 |
39DAP/reference | 1.03773 | 0.639 |
41DAP/reference | 0.95216 | 0.434 |
42DAP/reference | 1.0183 | 1 |
43DAP/reference | 0.9201 | 0.18 |
47DAP/reference | 1.05326 | 0.627 |
52DAP/reference | 1.0618 | 0.453 |
57DAP/reference | 0.99508 | 0.701 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81312 | 0.158 |
27DAP/17DAP | 0.92662 | 0.854 |
39DAP/27DAP | 1.05584 | 0.984 |
41DAP/39DAP | 1.17554 | 0.748 |
42DAP/41DAP | 0.96724 | 0.757 |
43DAP/42DAP | 0.99316 | 0.991 |
47DAP/43DAP | 1.10867 | 0.664 |
52DAP/47DAP | 0.91115 | 0.6 |
57DAP/52DAP | 1.09818 | 0.448 |
57DAP/7DAP | 1.44581 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81601 | 0.104 |
17DAP/reference | 0.88289 | 0.024 |
27DAP/reference | 0.96367 | 0.402 |
39DAP/reference | 0.96063 | 0.411 |
41DAP/reference | 1.07499 | 0.56 |
42DAP/reference | 1.03129 | 0.889 |
43DAP/reference | 0.97254 | 0.44 |
47DAP/reference | 0.93115 | 0.383 |
52DAP/reference | 0.92676 | 0.232 |
57DAP/reference | 0.94646 | 0.28 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19846 | 0.213 |
17DAP/reference | 1.06954 | 0.806 |
27DAP/reference | 1.06846 | 0.757 |
39DAP/reference | 1.13524 | 0.401 |
41DAP/reference | 0.99011 | 0.531 |
42DAP/reference | 1.09951 | 0.294 |
43DAP/reference | 1.4005 | 0.146 |
47DAP/reference | 1.08607 | 0.087 |
52DAP/reference | 1.20133 | 0.074 |
57DAP/reference | 1.10342 | 0.609 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96389 | 0.391 |
17DAP/reference | 1.114 | 0.72 |
27DAP/reference | 0.9406 | 0.243 |
39DAP/reference | 0.94834 | 0.271 |
41DAP/reference | 1.12974 | 0.276 |
42DAP/reference | 1.17022 | 0.175 |
43DAP/reference | 1.07584 | 0.565 |
47DAP/reference | 1.04117 | 0.934 |
52DAP/reference | 0.87571 | 0.256 |
57DAP/reference | 1.21784 | 0.262 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99198 | 1 |
26DAP/20DAP | 1.16118 | 0.594 |
34DAP/26DAP | 1.07223 | 1 |
51DAP/34DAP | 0.92674 | 0.66 |
52DAP/51DAP | 1.10625 | 0.792 |
53DAP/52DAP | 0.97064 | 0.868 |
55DAP/53DAP | 1.37286 | 0.537 |
57DAP/55DAP | 1.01336 | 0.938 |
62DAP/57DAP | 1.17192 | 0.445 |
68DAP/62DAP | 1.19904 | 0.507 |
68DAP/14DAP | 1.01241 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87361 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.85334 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 2.3557 | 0.23 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.80823 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09854 | 1 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.91732 | 1 |
1-3/M82 | 0.7531 | |
2-1-1/M82 | 0.69586 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.86499 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.9505 | 1 |
4-1/M82 | 0.85194 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.77957 | |
5-3/M82 | 0.972 | 1 |
6-2/M82 | 0.47827 | |
6-3/M82 | 0.81355 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.67711 | 0.434 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.88851 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.36055 | 0.839 |
IL1-4/WTpooled | 0.61067 | 0.562 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02507 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99244 | 1 |
DC3000/delta hrp 6h | 1.19937 | 1 |
DC3000/delta hrp 12h | 0.98007 | 1 |
DC3000/delta hrp 24h | 0.96079 | 0.75 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05721 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02671 | 1 |
Var 0h | 0.93505 | 1 |
Var 12h I row2-row1 | 1.2704 | 0.324 |
Var 12h NI row2-row1 | 0.839 | 0.494 |
Var 36h I row2-row1 | 0.74592 | 0.805 |
Var 36h NI row2-row1 | 0.91371 | 0.645 |
Var 60h I row2-row1 | 1.11823 | 0.562 |
Var 60h NI row2-row1 | 1.04873 | 1 |
Time course 0hI-0hNI | 0.94669 | 0.738 |
Time course 12hI-12hNI | 1.0299 | 0.77 |
Time course 36hI-36hNI | 1.05539 | 0.453 |
Time course 60hI-60hNI | 0.90299 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06299 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.93471 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.97752 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99115 | 0.609 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.669 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.35038 | 0.307 |
Manapal/WT (break) | 0.83472 | 1 |
Manapal/WT (red) | N/A | N/A |
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