Expression of 1-1-4.3.19.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.115090.904
27DAP/17DAP0.870990.779
39DAP/27DAP0.968240.7
41DAP/39DAP0.962960.795
42DAP/41DAP0.763741
43DAP/42DAP0.896920.813
47DAP/43DAP0.988250.804
52DAP/47DAP1.210120.787
57DAP/52DAP0.840390.605

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.001331
17DAP/reference0.932450.224
27DAP/reference0.970120.444
39DAP/reference1.037730.639
41DAP/reference0.952160.434
42DAP/reference1.01831
43DAP/reference0.92010.18
47DAP/reference1.053260.627
52DAP/reference1.06180.453
57DAP/reference0.995080.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.813120.158
27DAP/17DAP0.926620.854
39DAP/27DAP1.055840.984
41DAP/39DAP1.175540.748
42DAP/41DAP0.967240.757
43DAP/42DAP0.993160.991
47DAP/43DAP1.108670.664
52DAP/47DAP0.911150.6
57DAP/52DAP1.098180.448
57DAP/7DAP1.445811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.816010.104
17DAP/reference0.882890.024
27DAP/reference0.963670.402
39DAP/reference0.960630.411
41DAP/reference1.074990.56
42DAP/reference1.031290.889
43DAP/reference0.972540.44
47DAP/reference0.931150.383
52DAP/reference0.926760.232
57DAP/reference0.946460.28

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.198460.213
17DAP/reference1.069540.806
27DAP/reference1.068460.757
39DAP/reference1.135240.401
41DAP/reference0.990110.531
42DAP/reference1.099510.294
43DAP/reference1.40050.146
47DAP/reference1.086070.087
52DAP/reference1.201330.074
57DAP/reference1.103420.609

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.963890.391
17DAP/reference1.1140.72
27DAP/reference0.94060.243
39DAP/reference0.948340.271
41DAP/reference1.129740.276
42DAP/reference1.170220.175
43DAP/reference1.075840.565
47DAP/reference1.041170.934
52DAP/reference0.875710.256
57DAP/reference1.217840.262

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.991981
26DAP/20DAP1.161180.594
34DAP/26DAP1.072231
51DAP/34DAP0.926740.66
52DAP/51DAP1.106250.792
53DAP/52DAP0.970640.868
55DAP/53DAP1.372860.537
57DAP/55DAP1.013360.938
62DAP/57DAP1.171920.445
68DAP/62DAP1.199040.507
68DAP/14DAP1.012410.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.873610.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.85334
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant2.35570.23
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.80823

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.098541
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.917321
1-3/M820.7531
2-1-1/M820.69586
2-1/M82N/AN/A
2-6/M820.864991
3-2/M82N/AN/A
4-1-1/M820.95051
4-1/M820.85194
4-3-2/M82N/AN/A
4-3/M820.77957
5-3/M820.9721
6-2/M820.47827
6-3/M820.813551
7-1/M82N/AN/A
7-2/M820.677110.434
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.88851
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.360550.839
IL1-4/WTpooled0.610670.562
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.025071

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.992441
DC3000/delta hrp 6h1.199371
DC3000/delta hrp 12h0.980071
DC3000/delta hrp 24h0.960790.75

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.057211
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.026711
Var 0h0.935051
Var 12h I row2-row11.27040.324
Var 12h NI row2-row10.8390.494
Var 36h I row2-row10.745920.805
Var 36h NI row2-row10.913710.645
Var 60h I row2-row11.118230.562
Var 60h NI row2-row11.048731
Time course 0hI-0hNI0.946690.738
Time course 12hI-12hNI1.02990.77
Time course 36hI-36hNI1.055390.453
Time course 60hI-60hNI0.902990.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.062991
transgenic ySAMdc/azygous control (breaker)0.934710.49
transgenic ySAMdc/azygous control (red)0.977521

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.991150.609

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.6690.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.350380.307
Manapal/WT (break)0.834721
Manapal/WT (red)N/AN/A