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Expression of 1-1-4.3.2.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.060170.812
27DAP/17DAP1.24960.749
39DAP/27DAP0.915150.507
41DAP/39DAP1.154890.225
42DAP/41DAP1.089360.941
43DAP/42DAP1.043711
47DAP/43DAP1.237190.668
52DAP/47DAP1.151460.674
57DAP/52DAP1.125070.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.018820.994
17DAP/reference0.842350.028
27DAP/reference0.95860.369
39DAP/reference0.883310.106
41DAP/reference0.734320.016
42DAP/reference0.977370.295
43DAP/reference0.90660.211
47DAP/reference1.000340.674
52DAP/reference1.151880.335
57DAP/reference1.113340.6

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.944780.542
27DAP/17DAP1.041750.867
39DAP/27DAP1.02510.742
41DAP/39DAP0.982391
42DAP/41DAP1.005270.932
43DAP/42DAP1.039910.23
47DAP/43DAP0.998561
52DAP/47DAP0.993580.951
57DAP/52DAP0.931470.501
57DAP/7DAP1.104011

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.438180.036
17DAP/reference1.143530.112
27DAP/reference1.264570.023
39DAP/reference1.378710.008
41DAP/reference1.395990.019
42DAP/reference1.305720.009
43DAP/reference1.284880.007
47DAP/reference1.105020.178
52DAP/reference1.239260.016
57DAP/reference1.33860.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.210390.206
17DAP/reference1.011180.898
27DAP/reference1.220350.056
39DAP/reference1.125850.377
41DAP/reference1.107360.573
42DAP/reference0.972740.433
43DAP/reference0.895050.269
47DAP/reference0.884970.107
52DAP/reference1.033141
57DAP/reference0.885310.144

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.304580.048
17DAP/reference0.969860.624
27DAP/reference1.182520.081
39DAP/reference1.160810.189
41DAP/reference1.003980.826
42DAP/reference1.047450.701
43DAP/reference0.996460.685
47DAP/reference0.926890.207
52DAP/reference0.991370.821
57DAP/reference1.42020.041

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.861571
26DAP/20DAP0.990781
34DAP/26DAP1.018081
51DAP/34DAP0.972320.703
52DAP/51DAP0.974151
53DAP/52DAP0.985440.929
55DAP/53DAP1.0130.951
57DAP/55DAP0.966820.823
62DAP/57DAPN/AN/A
68DAP/62DAP1.1360.431
68DAP/14DAP2.064130.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.202710.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.698260.189
Mature Green Tomato/Ripe Tomato1.664830.017
Immature Eggplant/Mature Eggplant0.707490.081
Ripe Pepper/Ripe Tomato2.665430.256
Mature Eggplant/Ripe Tomato1.359441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.919130.907
1-1-2/M820.944351
12-2/M820.772450.955
12-4/M820.710540.272
1-3/M821.00828N/A
2-1-1/M820.882020.465
2-1/M820.993431
2-6/M820.879121
3-2/M820.795531
4-1-1/M820.923931
4-1/M821.02123N/A
4-3-2/M820.95619N/A
4-3/M820.670890.475
5-3/M821.547970.36
6-2/M820.61281N/A
6-3/M821.10525N/A
7-1/M82N/AN/A
7-2/M821.120881
9-3-2/M820.770280.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.752930.383
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.109530.362
IL12-4/WTpooled1.047710.891
IL1-4/WTpooled1.02925N/A
WT/WTpooled1.024221

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.256060.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.140050.671
DC3000/delta hrp 6h1.047491
DC3000/delta hrp 12h1.041931
DC3000/delta hrp 24h0.956810.662

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.08960.145
DC3000 delta B/DC3000 delta AB1.107690.302

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.143991
Exp 36h1.230351
Exp 60h1.042221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010381
Var 0h0.97521
Var 12h I row2-row11.009571
Var 12h NI row2-row11.055011
Var 36h I row2-row11.245920.908
Var 36h NI row2-row10.859580.584
Var 60h I row2-row10.971140.439
Var 60h NI row2-row10.956651
Time course 0hI-0hNI1.076140.662
Time course 12hI-12hNI1.00331
Time course 36hI-36hNI1.041830.248
Time course 60hI-60hNI1.304890.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.993010.662
transgenic ySAMdc/azygous control (breaker)1.115211
transgenic ySAMdc/azygous control (red)0.932251

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.183770.059

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.87820.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.97251
Manapal/WT (break)1.225261
Manapal/WT (red)1.103030.413