Expression of 1-1-4.3.2.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06017 | 0.812 |
27DAP/17DAP | 1.2496 | 0.749 |
39DAP/27DAP | 0.91515 | 0.507 |
41DAP/39DAP | 1.15489 | 0.225 |
42DAP/41DAP | 1.08936 | 0.941 |
43DAP/42DAP | 1.04371 | 1 |
47DAP/43DAP | 1.23719 | 0.668 |
52DAP/47DAP | 1.15146 | 0.674 |
57DAP/52DAP | 1.12507 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01882 | 0.994 |
17DAP/reference | 0.84235 | 0.028 |
27DAP/reference | 0.9586 | 0.369 |
39DAP/reference | 0.88331 | 0.106 |
41DAP/reference | 0.73432 | 0.016 |
42DAP/reference | 0.97737 | 0.295 |
43DAP/reference | 0.9066 | 0.211 |
47DAP/reference | 1.00034 | 0.674 |
52DAP/reference | 1.15188 | 0.335 |
57DAP/reference | 1.11334 | 0.6 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94478 | 0.542 |
27DAP/17DAP | 1.04175 | 0.867 |
39DAP/27DAP | 1.0251 | 0.742 |
41DAP/39DAP | 0.98239 | 1 |
42DAP/41DAP | 1.00527 | 0.932 |
43DAP/42DAP | 1.03991 | 0.23 |
47DAP/43DAP | 0.99856 | 1 |
52DAP/47DAP | 0.99358 | 0.951 |
57DAP/52DAP | 0.93147 | 0.501 |
57DAP/7DAP | 1.10401 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43818 | 0.036 |
17DAP/reference | 1.14353 | 0.112 |
27DAP/reference | 1.26457 | 0.023 |
39DAP/reference | 1.37871 | 0.008 |
41DAP/reference | 1.39599 | 0.019 |
42DAP/reference | 1.30572 | 0.009 |
43DAP/reference | 1.28488 | 0.007 |
47DAP/reference | 1.10502 | 0.178 |
52DAP/reference | 1.23926 | 0.016 |
57DAP/reference | 1.3386 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21039 | 0.206 |
17DAP/reference | 1.01118 | 0.898 |
27DAP/reference | 1.22035 | 0.056 |
39DAP/reference | 1.12585 | 0.377 |
41DAP/reference | 1.10736 | 0.573 |
42DAP/reference | 0.97274 | 0.433 |
43DAP/reference | 0.89505 | 0.269 |
47DAP/reference | 0.88497 | 0.107 |
52DAP/reference | 1.03314 | 1 |
57DAP/reference | 0.88531 | 0.144 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30458 | 0.048 |
17DAP/reference | 0.96986 | 0.624 |
27DAP/reference | 1.18252 | 0.081 |
39DAP/reference | 1.16081 | 0.189 |
41DAP/reference | 1.00398 | 0.826 |
42DAP/reference | 1.04745 | 0.701 |
43DAP/reference | 0.99646 | 0.685 |
47DAP/reference | 0.92689 | 0.207 |
52DAP/reference | 0.99137 | 0.821 |
57DAP/reference | 1.4202 | 0.041 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.86157 | 1 |
26DAP/20DAP | 0.99078 | 1 |
34DAP/26DAP | 1.01808 | 1 |
51DAP/34DAP | 0.97232 | 0.703 |
52DAP/51DAP | 0.97415 | 1 |
53DAP/52DAP | 0.98544 | 0.929 |
55DAP/53DAP | 1.013 | 0.951 |
57DAP/55DAP | 0.96682 | 0.823 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.136 | 0.431 |
68DAP/14DAP | 2.06413 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.20271 | 0.558 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.69826 | 0.189 |
Mature Green Tomato/Ripe Tomato | 1.66483 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.70749 | 0.081 |
Ripe Pepper/Ripe Tomato | 2.66543 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.35944 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.91913 | 0.907 |
1-1-2/M82 | 0.94435 | 1 |
12-2/M82 | 0.77245 | 0.955 |
12-4/M82 | 0.71054 | 0.272 |
1-3/M82 | 1.00828 | |
2-1-1/M82 | 0.88202 | 0.465 |
2-1/M82 | 0.99343 | 1 |
2-6/M82 | 0.87912 | 1 |
3-2/M82 | 0.79553 | 1 |
4-1-1/M82 | 0.92393 | 1 |
4-1/M82 | 1.02123 | |
4-3-2/M82 | 0.95619 | |
4-3/M82 | 0.67089 | 0.475 |
5-3/M82 | 1.54797 | 0.36 |
6-2/M82 | 0.61281 | |
6-3/M82 | 1.10525 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.12088 | 1 |
9-3-2/M82 | 0.77028 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.75293 | 0.383 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.10953 | 0.362 |
IL12-4/WTpooled | 1.04771 | 0.891 |
IL1-4/WTpooled | 1.02925 | |
WT/WTpooled | 1.02422 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.25606 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.14005 | 0.671 |
DC3000/delta hrp 6h | 1.04749 | 1 |
DC3000/delta hrp 12h | 1.04193 | 1 |
DC3000/delta hrp 24h | 0.95681 | 0.662 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0896 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.10769 | 0.302 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.14399 | 1 |
Exp 36h | 1.23035 | 1 |
Exp 60h | 1.04222 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01038 | 1 |
Var 0h | 0.9752 | 1 |
Var 12h I row2-row1 | 1.00957 | 1 |
Var 12h NI row2-row1 | 1.05501 | 1 |
Var 36h I row2-row1 | 1.24592 | 0.908 |
Var 36h NI row2-row1 | 0.85958 | 0.584 |
Var 60h I row2-row1 | 0.97114 | 0.439 |
Var 60h NI row2-row1 | 0.95665 | 1 |
Time course 0hI-0hNI | 1.07614 | 0.662 |
Time course 12hI-12hNI | 1.0033 | 1 |
Time course 36hI-36hNI | 1.04183 | 0.248 |
Time course 60hI-60hNI | 1.30489 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99301 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 1.11521 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93225 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.18377 | 0.059 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8782 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.9725 | 1 |
Manapal/WT (break) | 1.22526 | 1 |
Manapal/WT (red) | 1.10303 | 0.413 |
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