Expression of 1-1-4.3.2.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.939880.671
27DAP/17DAP1.244850.793
39DAP/27DAP0.623680.241
41DAP/39DAP1.252130.367
42DAP/41DAP1.363130.671
43DAP/42DAP1.019840.937
47DAP/43DAP1.17240.538
52DAP/47DAP1.005610.942
57DAP/52DAP1.056750.995

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.058480.441
17DAP/reference1.071370.22
27DAP/reference1.036920.58
39DAP/reference1.056170.301
41DAP/reference1.119170.287
42DAP/reference0.870730.004
43DAP/reference1.050320.678
47DAP/reference1.059730.685
52DAP/reference0.890370.096
57DAP/reference0.864620.044

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.97140.663
27DAP/17DAP1.110380.932
39DAP/27DAP1.181480.499
41DAP/39DAP0.854110.434
42DAP/41DAP1.158050.487
43DAP/42DAP1.128590.176
47DAP/43DAP1.03820.969
52DAP/47DAP0.978920.917
57DAP/52DAP0.885960.407
57DAP/7DAP0.802381

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.124240.564
17DAP/reference0.989220.599
27DAP/reference1.064331
39DAP/reference1.094070.297
41DAP/reference1.137130.363
42DAP/reference1.192930.132
43DAP/reference1.138620.408
47DAP/reference1.095450.685
52DAP/reference1.090890.428
57DAP/reference1.24060.031

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.043740.802
17DAP/reference1.051220.658
27DAP/reference0.902870.129
39DAP/reference0.872880.076
41DAP/reference0.83360.028
42DAP/reference0.862940.016
43DAP/reference1.148350.447
47DAP/reference0.887840.037
52DAP/reference0.954240.327
57DAP/reference1.033230.786

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.086530.659
17DAP/reference1.021640.854
27DAP/reference0.938810.397
39DAP/reference1.045280.691
41DAP/reference1.07160.397
42DAP/reference1.107070.671
43DAP/reference1.041171
47DAP/reference0.928130.278
52DAP/reference1.056370.749
57DAP/reference0.791470.042

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.941641
26DAP/20DAP0.75934
34DAP/26DAP1.085491
51DAP/34DAP1.675330.677
52DAP/51DAPN/AN/A
53DAP/52DAP1.06450.901
55DAP/53DAP1.085490.696
57DAP/55DAP0.974820.888
62DAP/57DAPN/AN/A
68DAP/62DAP1.234790.121
68DAP/14DAP0.525470.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.990820.737

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.94340.648
Mature Green Tomato/Ripe Tomato0.692050.066
Immature Eggplant/Mature Eggplant1.05881
Ripe Pepper/Ripe Tomato0.747250.293
Mature Eggplant/Ripe Tomato0.814041

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.20560.877
1-1-2/M821.003521
12-2/M820.94306
12-4/M820.77224
1-3/M82N/AN/A
2-1-1/M821.048330.457
2-1/M821.22696
2-6/M821.116910.395
3-2/M82N/AN/A
4-1-1/M820.954440.962
4-1/M820.99069
4-3-2/M820.9922
4-3/M820.983241
5-3/M821.230050.496
6-2/M820.77125
6-3/M821.276451
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.2269

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.876460.348
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.74810.293
IL12-4/WTpooled1.221860.516
IL1-4/WTpooled0.92472
WT/WTpooled1.069830.911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.004481

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.967061
DC3000/delta hrp 6h1.03210.95
DC3000/delta hrp 12h1.003131
DC3000/delta hrp 24h1.174040.308

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.61425

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.145421
Exp 36h0.719040.456
Exp 60h0.684720.266

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964521
Var 0h1.024340.98
Var 12h I row2-row10.860720.363
Var 12h NI row2-row11.057621
Var 36h I row2-row10.937421
Var 36h NI row2-row10.843090.329
Var 60h I row2-row11.364570.562
Var 60h NI row2-row10.899560.866
Time course 0hI-0hNI0.952030.656
Time course 12hI-12hNI0.924410.272
Time course 36hI-36hNI1.15040.031
Time course 60hI-60hNI1.117910.115

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.975950.314
transgenic ySAMdc/azygous control (breaker)1.141980.248
transgenic ySAMdc/azygous control (red)1.064710.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.985330.362

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.404150.228

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.962540.09
Manapal/WT (break)1.159930.381
Manapal/WT (red)0.810480.181