Expression of 1-1-4.3.2.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93988 | 0.671 |
27DAP/17DAP | 1.24485 | 0.793 |
39DAP/27DAP | 0.62368 | 0.241 |
41DAP/39DAP | 1.25213 | 0.367 |
42DAP/41DAP | 1.36313 | 0.671 |
43DAP/42DAP | 1.01984 | 0.937 |
47DAP/43DAP | 1.1724 | 0.538 |
52DAP/47DAP | 1.00561 | 0.942 |
57DAP/52DAP | 1.05675 | 0.995 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05848 | 0.441 |
17DAP/reference | 1.07137 | 0.22 |
27DAP/reference | 1.03692 | 0.58 |
39DAP/reference | 1.05617 | 0.301 |
41DAP/reference | 1.11917 | 0.287 |
42DAP/reference | 0.87073 | 0.004 |
43DAP/reference | 1.05032 | 0.678 |
47DAP/reference | 1.05973 | 0.685 |
52DAP/reference | 0.89037 | 0.096 |
57DAP/reference | 0.86462 | 0.044 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9714 | 0.663 |
27DAP/17DAP | 1.11038 | 0.932 |
39DAP/27DAP | 1.18148 | 0.499 |
41DAP/39DAP | 0.85411 | 0.434 |
42DAP/41DAP | 1.15805 | 0.487 |
43DAP/42DAP | 1.12859 | 0.176 |
47DAP/43DAP | 1.0382 | 0.969 |
52DAP/47DAP | 0.97892 | 0.917 |
57DAP/52DAP | 0.88596 | 0.407 |
57DAP/7DAP | 0.80238 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12424 | 0.564 |
17DAP/reference | 0.98922 | 0.599 |
27DAP/reference | 1.06433 | 1 |
39DAP/reference | 1.09407 | 0.297 |
41DAP/reference | 1.13713 | 0.363 |
42DAP/reference | 1.19293 | 0.132 |
43DAP/reference | 1.13862 | 0.408 |
47DAP/reference | 1.09545 | 0.685 |
52DAP/reference | 1.09089 | 0.428 |
57DAP/reference | 1.2406 | 0.031 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04374 | 0.802 |
17DAP/reference | 1.05122 | 0.658 |
27DAP/reference | 0.90287 | 0.129 |
39DAP/reference | 0.87288 | 0.076 |
41DAP/reference | 0.8336 | 0.028 |
42DAP/reference | 0.86294 | 0.016 |
43DAP/reference | 1.14835 | 0.447 |
47DAP/reference | 0.88784 | 0.037 |
52DAP/reference | 0.95424 | 0.327 |
57DAP/reference | 1.03323 | 0.786 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08653 | 0.659 |
17DAP/reference | 1.02164 | 0.854 |
27DAP/reference | 0.93881 | 0.397 |
39DAP/reference | 1.04528 | 0.691 |
41DAP/reference | 1.0716 | 0.397 |
42DAP/reference | 1.10707 | 0.671 |
43DAP/reference | 1.04117 | 1 |
47DAP/reference | 0.92813 | 0.278 |
52DAP/reference | 1.05637 | 0.749 |
57DAP/reference | 0.79147 | 0.042 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94164 | 1 |
26DAP/20DAP | 0.75934 | |
34DAP/26DAP | 1.08549 | 1 |
51DAP/34DAP | 1.67533 | 0.677 |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 1.0645 | 0.901 |
55DAP/53DAP | 1.08549 | 0.696 |
57DAP/55DAP | 0.97482 | 0.888 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.23479 | 0.121 |
68DAP/14DAP | 0.52547 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.99082 | 0.737 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.9434 | 0.648 |
Mature Green Tomato/Ripe Tomato | 0.69205 | 0.066 |
Immature Eggplant/Mature Eggplant | 1.05881 | |
Ripe Pepper/Ripe Tomato | 0.74725 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.81404 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.2056 | 0.877 |
1-1-2/M82 | 1.00352 | 1 |
12-2/M82 | 0.94306 | |
12-4/M82 | 0.77224 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.04833 | 0.457 |
2-1/M82 | 1.22696 | |
2-6/M82 | 1.11691 | 0.395 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.95444 | 0.962 |
4-1/M82 | 0.99069 | |
4-3-2/M82 | 0.9922 | |
4-3/M82 | 0.98324 | 1 |
5-3/M82 | 1.23005 | 0.496 |
6-2/M82 | 0.77125 | |
6-3/M82 | 1.27645 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.2269 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.87646 | 0.348 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.7481 | 0.293 |
IL12-4/WTpooled | 1.22186 | 0.516 |
IL1-4/WTpooled | 0.92472 | |
WT/WTpooled | 1.06983 | 0.911 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00448 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96706 | 1 |
DC3000/delta hrp 6h | 1.0321 | 0.95 |
DC3000/delta hrp 12h | 1.00313 | 1 |
DC3000/delta hrp 24h | 1.17404 | 0.308 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.61425 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.14542 | 1 |
Exp 36h | 0.71904 | 0.456 |
Exp 60h | 0.68472 | 0.266 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96452 | 1 |
Var 0h | 1.02434 | 0.98 |
Var 12h I row2-row1 | 0.86072 | 0.363 |
Var 12h NI row2-row1 | 1.05762 | 1 |
Var 36h I row2-row1 | 0.93742 | 1 |
Var 36h NI row2-row1 | 0.84309 | 0.329 |
Var 60h I row2-row1 | 1.36457 | 0.562 |
Var 60h NI row2-row1 | 0.89956 | 0.866 |
Time course 0hI-0hNI | 0.95203 | 0.656 |
Time course 12hI-12hNI | 0.92441 | 0.272 |
Time course 36hI-36hNI | 1.1504 | 0.031 |
Time course 60hI-60hNI | 1.11791 | 0.115 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97595 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.14198 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.06471 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98533 | 0.362 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.40415 | 0.228 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.96254 | 0.09 |
Manapal/WT (break) | 1.15993 | 0.381 |
Manapal/WT (red) | 0.81048 | 0.181 |
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