Expression of 1-1-4.3.2.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97004 | 0.779 |
27DAP/17DAP | 0.9315 | 0.892 |
39DAP/27DAP | 0.91471 | 0.549 |
41DAP/39DAP | 1.11216 | 0.78 |
42DAP/41DAP | 1.00981 | 1 |
43DAP/42DAP | 0.97141 | 0.912 |
47DAP/43DAP | 0.93524 | 0.705 |
52DAP/47DAP | 1.18281 | 0.76 |
57DAP/52DAP | 0.95682 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20543 | 0.043 |
17DAP/reference | 1.0451 | 0.258 |
27DAP/reference | 1.03029 | 0.559 |
39DAP/reference | 1.05708 | 0.021 |
41DAP/reference | 1.03873 | 0.91 |
42DAP/reference | 0.97264 | 0.103 |
43DAP/reference | 1.01395 | 0.899 |
47DAP/reference | 1.03028 | 0.752 |
52DAP/reference | 0.97945 | 0.598 |
57DAP/reference | 0.93969 | 0.199 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00327 | 1 |
27DAP/17DAP | 1.00946 | 0.969 |
39DAP/27DAP | 1.07851 | 0.636 |
41DAP/39DAP | 1.03469 | 0.763 |
42DAP/41DAP | 1.00394 | 1 |
43DAP/42DAP | 0.99054 | 0.928 |
47DAP/43DAP | 1.03307 | 0.857 |
52DAP/47DAP | 1.02498 | 0.907 |
57DAP/52DAP | 0.99366 | 0.848 |
57DAP/7DAP | 1.0141 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0241 | 0.843 |
17DAP/reference | 0.95536 | 0.094 |
27DAP/reference | 0.91672 | 0.048 |
39DAP/reference | 1.04856 | 0.141 |
41DAP/reference | 1.03732 | 0.35 |
42DAP/reference | 0.98652 | 0.506 |
43DAP/reference | 0.96697 | 0.292 |
47DAP/reference | 1.04087 | 0.659 |
52DAP/reference | 1.03321 | 0.401 |
57DAP/reference | 1.18751 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06299 | 0.114 |
17DAP/reference | 1.05284 | 0.348 |
27DAP/reference | 1.01672 | 1 |
39DAP/reference | 1.03393 | 0.705 |
41DAP/reference | 0.92531 | 0.038 |
42DAP/reference | 0.95225 | 0.15 |
43DAP/reference | 0.99426 | 0.774 |
47DAP/reference | 1.05227 | 0.247 |
52DAP/reference | 0.96178 | 0.203 |
57DAP/reference | 1.0681 | 0.146 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91513 | 0.158 |
17DAP/reference | 0.96835 | 0.579 |
27DAP/reference | 0.99635 | 0.763 |
39DAP/reference | 0.91733 | 0.008 |
41DAP/reference | 0.97625 | 0.167 |
42DAP/reference | 0.86614 | 0.017 |
43DAP/reference | 0.9676 | 0.281 |
47DAP/reference | 0.98685 | 0.538 |
52DAP/reference | 1.02608 | 0.876 |
57DAP/reference | 0.87184 | 0.048 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98661 | 1 |
26DAP/20DAP | 0.9651 | 1 |
34DAP/26DAP | 1.07475 | 0.542 |
51DAP/34DAP | 1.06764 | 0.677 |
52DAP/51DAP | 1.00482 | 0.954 |
53DAP/52DAP | 1.03565 | 0.901 |
55DAP/53DAP | 0.94197 | 0.5 |
57DAP/55DAP | 1.0393 | 0.543 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 0.83223 | 0.378 |
68DAP/14DAP | 0.97745 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.11632 | 0.369 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.96492 | 0.71 |
Mature Green Tomato/Ripe Tomato | 1.06756 | 0.69 |
Immature Eggplant/Mature Eggplant | 1.13823 | 0.259 |
Ripe Pepper/Ripe Tomato | 0.66663 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.16142 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.91734 | 0.651 |
1-1-2/M82 | 1.0572 | 1 |
12-2/M82 | 1.13845 | 1 |
12-4/M82 | 0.9847 | 1 |
1-3/M82 | 0.97367 | 1 |
2-1-1/M82 | 1.01889 | 1 |
2-1/M82 | 1.20809 | 1 |
2-6/M82 | 0.96845 | 1 |
3-2/M82 | 0.94271 | 1 |
4-1-1/M82 | 0.99324 | 1 |
4-1/M82 | 0.78789 | 0.737 |
4-3-2/M82 | 1.00428 | 1 |
4-3/M82 | 0.9524 | 0.72 |
5-3/M82 | 1.01985 | 1 |
6-2/M82 | 0.96473 | 0.497 |
6-3/M82 | 1.15974 | 1 |
7-1/M82 | 0.97541 | 0.509 |
7-2/M82 | 1.1012 | 1 |
9-3-2/M82 | 0.90058 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.01538 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.85042 | 0.418 |
IL12-4/WTpooled | 1.08432 | 0.532 |
IL1-4/WTpooled | 0.94445 | |
WT/WTpooled | 1.00231 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04587 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00377 | 1 |
DC3000/delta hrp 6h | 0.99177 | 0.95 |
DC3000/delta hrp 12h | 0.98782 | 1 |
DC3000/delta hrp 24h | 1.06928 | 0.604 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12376 | 0.053 |
DC3000 delta B/DC3000 delta AB | 1.16664 | 0.208 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89717 | 1 |
Exp 36h | 1.26751 | 0.693 |
Exp 60h | 1.07643 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96304 | 1 |
Var 0h | 1.10708 | 0.339 |
Var 12h I row2-row1 | 1.08772 | 0.613 |
Var 12h NI row2-row1 | 1.09918 | 1 |
Var 36h I row2-row1 | 0.9435 | 1 |
Var 36h NI row2-row1 | 0.8458 | 0.469 |
Var 60h I row2-row1 | 1.19569 | 1 |
Var 60h NI row2-row1 | 1.00656 | 1 |
Time course 0hI-0hNI | 0.97366 | 0.881 |
Time course 12hI-12hNI | 1.0205 | 0.798 |
Time course 36hI-36hNI | 1.09424 | 0.147 |
Time course 60hI-60hNI | 1.15488 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.85569 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 1.67217 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.12555 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03966 | 0.148 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.9401 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.67369 | 0.172 |
Manapal/WT (break) | 1.08765 | 1 |
Manapal/WT (red) | 1.12418 | 0.222 |
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