Expression of 1-1-4.3.20.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01575 | 0.801 |
27DAP/17DAP | 1.53679 | 0.579 |
39DAP/27DAP | 1.21231 | 0.876 |
41DAP/39DAP | 1.20553 | 0.359 |
42DAP/41DAP | 0.93286 | 1 |
43DAP/42DAP | 0.95518 | 0.9 |
47DAP/43DAP | 0.84077 | 0.51 |
52DAP/47DAP | 1.29607 | 0.487 |
57DAP/52DAP | 1.34912 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39119 | 0.587 |
17DAP/reference | 1.0974 | 0.248 |
27DAP/reference | 0.94994 | 0.484 |
39DAP/reference | 0.97028 | 0.624 |
41DAP/reference | 0.99344 | 1 |
42DAP/reference | 0.96188 | 0.225 |
43DAP/reference | 1.18434 | |
47DAP/reference | 0.95584 | 0.174 |
52DAP/reference | 0.9236 | 0.427 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.27765 | 0.826 |
27DAP/17DAP | 0.72125 | 0.206 |
39DAP/27DAP | 0.99971 | 1 |
41DAP/39DAP | 1.44814 | 0.304 |
42DAP/41DAP | 0.87203 | 0.436 |
43DAP/42DAP | 0.90945 | 0.665 |
47DAP/43DAP | 0.9624 | 0.861 |
52DAP/47DAP | 0.93891 | 0.857 |
57DAP/52DAP | 1.69897 | 0.357 |
57DAP/7DAP | 1.92521 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77241 | 0.1 |
17DAP/reference | 0.88194 | 0.124 |
27DAP/reference | 0.82551 | 0.017 |
39DAP/reference | 0.71365 | 0.018 |
41DAP/reference | 0.68805 | 0.018 |
42DAP/reference | 0.87687 | 0.2 |
43DAP/reference | 0.80599 | 0.079 |
47DAP/reference | 0.82816 | 0.222 |
52DAP/reference | 0.92372 | 0.213 |
57DAP/reference | 0.88811 | 0.223 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00599 | 0.848 |
17DAP/reference | 0.82114 | 0.012 |
27DAP/reference | 0.84251 | 0.167 |
39DAP/reference | 0.79809 | 0.102 |
41DAP/reference | 0.87222 | 0.188 |
42DAP/reference | 0.8504 | 0.039 |
43DAP/reference | 0.93108 | 0.423 |
47DAP/reference | 0.88756 | 0.081 |
52DAP/reference | 0.847 | 0.01 |
57DAP/reference | 0.8124 | 0.037 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94414 | 0.362 |
17DAP/reference | 0.95895 | 0.579 |
27DAP/reference | 1.01185 | 0.834 |
39DAP/reference | 0.8462 | 0.018 |
41DAP/reference | 0.87555 | 0.209 |
42DAP/reference | 0.88468 | 0.108 |
43DAP/reference | 1.0399 | 0.738 |
47DAP/reference | 1.09255 | 0.372 |
52DAP/reference | 2.32901 | 0.201 |
57DAP/reference | 0.98859 | 0.693 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.87931 | 0.071 |
26DAP/20DAP | 0.44427 | 0.512 |
34DAP/26DAP | 1.65331 | 1 |
51DAP/34DAP | 1.25826 | 0.814 |
52DAP/51DAP | 1.3494 | 0.708 |
53DAP/52DAP | 0.8304 | 0.212 |
55DAP/53DAP | 0.76369 | 0.282 |
57DAP/55DAP | 1.00649 | 0.899 |
62DAP/57DAP | 1.2612 | 0.8 |
68DAP/62DAP | 1.06113 | 1 |
68DAP/14DAP | 0.90259 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04542 | 0.774 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.72497 | 0.752 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.29058 | |
Mature Eggplant/Ripe Tomato | 0.06188 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.08124 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.92964 | 1 |
IL2-6/WTpooled | 1.12041 | |
IL7-5/WTpooled | 0.91039 | 1 |
IL7-3/WTpooled | 1.00484 | 1 |
IL12-4/WTpooled | 1.33925 | 0.557 |
IL1-4/WTpooled | 1.01638 | 1 |
WT/WTpooled | 0.98105 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.44537 | |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.14265 | 0.654 |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | 2.43533 | 1 |
Var 36h NI row2-row1 | 1.42916 | |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 5.39203 | |
Time course 0hI-0hNI | 1.28728 | 0.852 |
Time course 12hI-12hNI | 1.08031 | 0.678 |
Time course 36hI-36hNI | 0.80764 | 0.355 |
Time course 60hI-60hNI | 1.64772 | 0.254 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.23479 | 0.312 |
transgenic ySAMdc/azygous control (breaker) | 0.72915 | 0.139 |
transgenic ySAMdc/azygous control (red) | 0.96356 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02244 | 0.287 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.62033 | 0.172 |
Manapal/WT (break) | 0.91252 | 1 |
Manapal/WT (red) | 0.69309 | 0.229 |
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