Expression of 1-1-4.3.20.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.015750.801
27DAP/17DAP1.536790.579
39DAP/27DAP1.212310.876
41DAP/39DAP1.205530.359
42DAP/41DAP0.932861
43DAP/42DAP0.955180.9
47DAP/43DAP0.840770.51
52DAP/47DAP1.296070.487
57DAP/52DAP1.349121

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.391190.587
17DAP/reference1.09740.248
27DAP/reference0.949940.484
39DAP/reference0.970280.624
41DAP/reference0.993441
42DAP/reference0.961880.225
43DAP/reference1.18434
47DAP/reference0.955840.174
52DAP/reference0.92360.427
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.277650.826
27DAP/17DAP0.721250.206
39DAP/27DAP0.999711
41DAP/39DAP1.448140.304
42DAP/41DAP0.872030.436
43DAP/42DAP0.909450.665
47DAP/43DAP0.96240.861
52DAP/47DAP0.938910.857
57DAP/52DAP1.698970.357
57DAP/7DAP1.92521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.772410.1
17DAP/reference0.881940.124
27DAP/reference0.825510.017
39DAP/reference0.713650.018
41DAP/reference0.688050.018
42DAP/reference0.876870.2
43DAP/reference0.805990.079
47DAP/reference0.828160.222
52DAP/reference0.923720.213
57DAP/reference0.888110.223

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.005990.848
17DAP/reference0.821140.012
27DAP/reference0.842510.167
39DAP/reference0.798090.102
41DAP/reference0.872220.188
42DAP/reference0.85040.039
43DAP/reference0.931080.423
47DAP/reference0.887560.081
52DAP/reference0.8470.01
57DAP/reference0.81240.037

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.944140.362
17DAP/reference0.958950.579
27DAP/reference1.011850.834
39DAP/reference0.84620.018
41DAP/reference0.875550.209
42DAP/reference0.884680.108
43DAP/reference1.03990.738
47DAP/reference1.092550.372
52DAP/reference2.329010.201
57DAP/reference0.988590.693

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.879310.071
26DAP/20DAP0.444270.512
34DAP/26DAP1.653311
51DAP/34DAP1.258260.814
52DAP/51DAP1.34940.708
53DAP/52DAP0.83040.212
55DAP/53DAP0.763690.282
57DAP/55DAP1.006490.899
62DAP/57DAP1.26120.8
68DAP/62DAP1.061131
68DAP/14DAP0.902591

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.045420.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.724970.752
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.29058
Mature Eggplant/Ripe Tomato0.06188

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.08124
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.929641
IL2-6/WTpooled1.12041
IL7-5/WTpooled0.910391
IL7-3/WTpooled1.004841
IL12-4/WTpooled1.339250.557
IL1-4/WTpooled1.016381
WT/WTpooled0.981051

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.44537
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row11.142650.654
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row12.435331
Var 36h NI row2-row11.42916
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row15.39203
Time course 0hI-0hNI1.287280.852
Time course 12hI-12hNI1.080310.678
Time course 36hI-36hNI0.807640.355
Time course 60hI-60hNI1.647720.254

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.234790.312
transgenic ySAMdc/azygous control (breaker)0.729150.139
transgenic ySAMdc/azygous control (red)0.963561

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.022440.287

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.620330.172
Manapal/WT (break)0.912521
Manapal/WT (red)0.693090.229