Expression of 1-1-4.3.20.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.961740.728
27DAP/17DAP1.252020.767
39DAP/27DAP1.235360.755
41DAP/39DAP1.340710.284
42DAP/41DAP1.008491
43DAP/42DAP1.06091
47DAP/43DAP1.198160.618
52DAP/47DAP1.047130.915
57DAP/52DAP1.085210.958

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.0360.872
17DAP/reference0.957910.536
27DAP/reference0.954750.61
39DAP/reference0.970920.651
41DAP/reference1.042570.855
42DAP/reference0.92720.041
43DAP/reference0.997590.904
47DAP/reference1.051040.558
52DAP/reference1.031080.8
57DAP/reference0.987830.639

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.152890.213
27DAP/17DAP1.024531
39DAP/27DAP1.256190.353
41DAP/39DAP0.887460.512
42DAP/41DAP1.082050.927
43DAP/42DAP0.99640.991
47DAP/43DAP1.086770.69
52DAP/47DAP0.98020.917
57DAP/52DAP0.946190.66
57DAP/7DAP1.248511

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066990.418
17DAP/reference1.112220.525
27DAP/reference0.915930.033
39DAP/reference0.942560.23
41DAP/reference1.01271
42DAP/reference0.893420.09
43DAP/reference1.026161
47DAP/reference1.395790.026
52DAP/reference1.220070.197
57DAP/reference1.077670.612

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.041050.885
17DAP/reference0.975920.561
27DAP/reference0.869050.1
39DAP/reference0.844450.025
41DAP/reference0.759880.042
42DAP/reference0.919960.212
43DAP/reference0.888770.206
47DAP/reference1.042060.89
52DAP/reference0.944140.327
57DAP/reference1.07480.609

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.058490.493
17DAP/reference1.080540.602
27DAP/reference1.166920.072
39DAP/reference0.908690.058
41DAP/reference1.039380.818
42DAP/reference1.068740.4
43DAP/reference1.041210.779
47DAP/reference1.155160.081
52DAP/reference1.041060.99
57DAP/reference1.090140.401

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.309490.966
26DAP/20DAP1.181410.493
34DAP/26DAP0.759670.322
51DAP/34DAP0.48992
52DAP/51DAP1.059980.722
53DAP/52DAP1.109620.902
55DAP/53DAP0.841110.663
57DAP/55DAP0.955770.736
62DAP/57DAP1.067381
68DAP/62DAP1.757660.049
68DAP/14DAP1.962330.077

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.04070.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.951540.563
Mature Green Tomato/Ripe Tomato0.565810.086
Immature Eggplant/Mature Eggplant1.384240.05
Ripe Pepper/Ripe Tomato0.614680.224
Mature Eggplant/Ripe Tomato0.659261

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.914850.883
1-1-2/M821.264990.977
12-2/M820.914130.955
12-4/M820.870970.619
1-3/M821.593520.277
2-1-1/M821.192140.764
2-1/M821.088641
2-6/M820.910631
3-2/M821.038380.717
4-1-1/M821.235711
4-1/M821.007931
4-3-2/M821.063151
4-3/M821.306390.268
5-3/M821.063450.467
6-2/M821.036861
6-3/M820.967011
7-1/M821.016041
7-2/M820.938790.881
9-3-2/M821.091171

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.294990.277
IL2-6/WTpooled0.697030.383
IL7-5/WTpooled0.787070.483
IL7-3/WTpooled1.540711
IL12-4/WTpooled1.171160.646
IL1-4/WTpooled1.109341
WT/WTpooled1.081881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.998821

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.130280.914
DC3000/delta hrp 6h1.005990.95
DC3000/delta hrp 12h1.010631
DC3000/delta hrp 24h1.18233

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.895550.189

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.023111
Exp 36h1.369110.489
Exp 60h1.100770.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.973781
Var 0hN/AN/A
Var 12h I row2-row11.126570.544
Var 12h NI row2-row10.762810.713
Var 36h I row2-row10.97291
Var 36h NI row2-row11.283250.276
Var 60h I row2-row10.859090.285
Var 60h NI row2-row11.546510.904
Time course 0hI-0hNI1.054160.852
Time course 12hI-12hNI1.00681
Time course 36hI-36hNI0.930560.295
Time course 60hI-60hNI1.290650.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.988440.662
transgenic ySAMdc/azygous control (breaker)0.862630.251
transgenic ySAMdc/azygous control (red)0.848361

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030460.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.178320.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.757970.172
Manapal/WT (break)0.750630.299
Manapal/WT (red)0.7810.216