Expression of 1-1-4.3.4.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.6772 | 0.034 |
27DAP/17DAP | 0.93134 | 0.869 |
39DAP/27DAP | 1.66201 | 0.235 |
41DAP/39DAP | 0.71445 | 0.118 |
42DAP/41DAP | 0.92686 | 1 |
43DAP/42DAP | 0.83605 | 0.694 |
47DAP/43DAP | 0.86296 | 0.565 |
52DAP/47DAP | 1.23873 | 0.608 |
57DAP/52DAP | 1.15709 | 0.908 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31902 | 0.025 |
17DAP/reference | 1.13107 | 0.086 |
27DAP/reference | 0.89997 | 0.249 |
39DAP/reference | 0.93567 | 0.315 |
41DAP/reference | 0.90814 | 0.341 |
42DAP/reference | 0.91846 | 0.041 |
43DAP/reference | 1.05335 | 0.646 |
47DAP/reference | 1.0533 | 0.433 |
52DAP/reference | 0.9952 | 0.618 |
57DAP/reference | 1.12472 | 0.066 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8061 | 0.09 |
27DAP/17DAP | 0.87626 | 0.39 |
39DAP/27DAP | 0.97266 | 0.852 |
41DAP/39DAP | 0.97104 | 0.945 |
42DAP/41DAP | 1.09883 | 0.526 |
43DAP/42DAP | 1.03846 | 0.585 |
47DAP/43DAP | 1.07761 | 0.69 |
52DAP/47DAP | 0.93099 | 0.739 |
57DAP/52DAP | 1.07103 | 0.622 |
57DAP/7DAP | 0.79897 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.60465 | 0.025 |
17DAP/reference | 1.44307 | 0.008 |
27DAP/reference | 1.39717 | 0.017 |
39DAP/reference | 1.38498 | 0.022 |
41DAP/reference | 1.3942 | 0.014 |
42DAP/reference | 1.3522 | 0.016 |
43DAP/reference | 1.29676 | 0.012 |
47DAP/reference | 1.22331 | 0.032 |
52DAP/reference | 1.45589 | 0.01 |
57DAP/reference | 1.29525 | 0.023 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.81062 | 0.22 |
17DAP/reference | 1.20178 | 0.396 |
27DAP/reference | 1.13661 | 0.249 |
39DAP/reference | 1.0738 | 0.3 |
41DAP/reference | 0.98488 | 0.557 |
42DAP/reference | 0.98813 | 0.594 |
43DAP/reference | 1.05646 | 0.854 |
47DAP/reference | 1.05256 | 0.556 |
52DAP/reference | 0.92477 | 0.051 |
57DAP/reference | 0.96668 | 0.318 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.4601 | 0.019 |
17DAP/reference | 1.18776 | 0.431 |
27DAP/reference | 1.26763 | 0.038 |
39DAP/reference | 1.39942 | 0.008 |
41DAP/reference | 1.20785 | 0.022 |
42DAP/reference | 1.12048 | 0.171 |
43DAP/reference | 1.07161 | 0.617 |
47DAP/reference | 0.87392 | 0.139 |
52DAP/reference | 1.069 | 0.749 |
57DAP/reference | 1.20942 | 0.043 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97522 | 1 |
26DAP/20DAP | 1.66609 | 0.192 |
34DAP/26DAP | 1.17113 | 1 |
51DAP/34DAP | 0.82375 | 0.472 |
52DAP/51DAP | 0.73738 | 0.151 |
53DAP/52DAP | 0.79284 | 0.297 |
55DAP/53DAP | 0.75627 | 0.149 |
57DAP/55DAP | 1.20833 | 0.986 |
62DAP/57DAP | 0.86626 | 0.994 |
68DAP/62DAP | 0.63535 | 0.406 |
68DAP/14DAP | 1.19062 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91312 | 0.269 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.83254 | 0.058 |
Mature Green Tomato/Ripe Tomato | 2.2775 | 0.025 |
Immature Eggplant/Mature Eggplant | 1.06057 | 0.606 |
Ripe Pepper/Ripe Tomato | 1.55408 | |
Mature Eggplant/Ripe Tomato | 2.17315 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98309 | 0.944 |
1-1-2/M82 | 1.19074 | 0.972 |
12-2/M82 | 0.94102 | 0.955 |
12-4/M82 | 1.14166 | 1 |
1-3/M82 | 1.60619 | 0.277 |
2-1-1/M82 | 1.05695 | 1 |
2-1/M82 | 1.09603 | |
2-6/M82 | 0.95873 | 1 |
3-2/M82 | 1.13336 | 0.463 |
4-1-1/M82 | 0.81194 | 0.674 |
4-1/M82 | 1.10881 | |
4-3-2/M82 | 1.29336 | 1 |
4-3/M82 | 1.1359 | 0.268 |
5-3/M82 | 1.06209 | 1 |
6-2/M82 | 0.89424 | |
6-3/M82 | 0.73825 | 0.916 |
7-1/M82 | 1.2476 | |
7-2/M82 | 1.13327 | 1 |
9-3-2/M82 | 1.14633 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.38303 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.19943 | |
IL12-4/WTpooled | 1.41989 | 0.695 |
IL1-4/WTpooled | 1.08122 | |
WT/WTpooled | 1.093 | 0.874 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.19963 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.16759 | 0.724 |
DC3000/delta hrp 6h | 1.03226 | 1 |
DC3000/delta hrp 12h | 0.97533 | 1 |
DC3000/delta hrp 24h | 1.02837 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.3749 | 0.042 |
DC3000 delta B/DC3000 delta AB | 0.70156 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90206 | 0.265 |
Exp 36h | 0.97314 | 1 |
Exp 60h | 0.85528 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.04299 | 0.936 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10763 | 0.253 |
transgenic ySAMdc/azygous control (breaker) | 2.02798 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.73498 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93131 | 0.049 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.25724 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.16278 | 0.09 |
Manapal/WT (break) | 1.76602 | 0.13 |
Manapal/WT (red) | 1.00911 | 1 |
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