Expression of 1-1-4.3.4.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.67720.034
27DAP/17DAP0.931340.869
39DAP/27DAP1.662010.235
41DAP/39DAP0.714450.118
42DAP/41DAP0.926861
43DAP/42DAP0.836050.694
47DAP/43DAP0.862960.565
52DAP/47DAP1.238730.608
57DAP/52DAP1.157090.908

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.319020.025
17DAP/reference1.131070.086
27DAP/reference0.899970.249
39DAP/reference0.935670.315
41DAP/reference0.908140.341
42DAP/reference0.918460.041
43DAP/reference1.053350.646
47DAP/reference1.05330.433
52DAP/reference0.99520.618
57DAP/reference1.124720.066

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.80610.09
27DAP/17DAP0.876260.39
39DAP/27DAP0.972660.852
41DAP/39DAP0.971040.945
42DAP/41DAP1.098830.526
43DAP/42DAP1.038460.585
47DAP/43DAP1.077610.69
52DAP/47DAP0.930990.739
57DAP/52DAP1.071030.622
57DAP/7DAP0.798971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.604650.025
17DAP/reference1.443070.008
27DAP/reference1.397170.017
39DAP/reference1.384980.022
41DAP/reference1.39420.014
42DAP/reference1.35220.016
43DAP/reference1.296760.012
47DAP/reference1.223310.032
52DAP/reference1.455890.01
57DAP/reference1.295250.023

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.810620.22
17DAP/reference1.201780.396
27DAP/reference1.136610.249
39DAP/reference1.07380.3
41DAP/reference0.984880.557
42DAP/reference0.988130.594
43DAP/reference1.056460.854
47DAP/reference1.052560.556
52DAP/reference0.924770.051
57DAP/reference0.966680.318

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.46010.019
17DAP/reference1.187760.431
27DAP/reference1.267630.038
39DAP/reference1.399420.008
41DAP/reference1.207850.022
42DAP/reference1.120480.171
43DAP/reference1.071610.617
47DAP/reference0.873920.139
52DAP/reference1.0690.749
57DAP/reference1.209420.043

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.975221
26DAP/20DAP1.666090.192
34DAP/26DAP1.171131
51DAP/34DAP0.823750.472
52DAP/51DAP0.737380.151
53DAP/52DAP0.792840.297
55DAP/53DAP0.756270.149
57DAP/55DAP1.208330.986
62DAP/57DAP0.866260.994
68DAP/62DAP0.635350.406
68DAP/14DAP1.190620.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.913120.269

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.832540.058
Mature Green Tomato/Ripe Tomato2.27750.025
Immature Eggplant/Mature Eggplant1.060570.606
Ripe Pepper/Ripe Tomato1.55408
Mature Eggplant/Ripe Tomato2.173150.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.983090.944
1-1-2/M821.190740.972
12-2/M820.941020.955
12-4/M821.141661
1-3/M821.606190.277
2-1-1/M821.056951
2-1/M821.09603
2-6/M820.958731
3-2/M821.133360.463
4-1-1/M820.811940.674
4-1/M821.10881
4-3-2/M821.293361
4-3/M821.13590.268
5-3/M821.062091
6-2/M820.89424
6-3/M820.738250.916
7-1/M821.2476
7-2/M821.133271
9-3-2/M821.146331

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.383030.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.19943
IL12-4/WTpooled1.419890.695
IL1-4/WTpooled1.08122
WT/WTpooled1.0930.874

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.199630.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.167590.724
DC3000/delta hrp 6h1.032261
DC3000/delta hrp 12h0.975331
DC3000/delta hrp 24h1.028370.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.37490.042
DC3000 delta B/DC3000 delta AB0.70156

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.902060.265
Exp 36h0.973141
Exp 60h0.855280.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.042990.936
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.107630.253
transgenic ySAMdc/azygous control (breaker)2.027980.248
transgenic ySAMdc/azygous control (red)1.734980.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.931310.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.257240.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.162780.09
Manapal/WT (break)1.766020.13
Manapal/WT (red)1.009111