Expression of 1-1-4.3.5.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79919 | 0.195 |
27DAP/17DAP | 0.9842 | 0.952 |
39DAP/27DAP | 0.69405 | 0.399 |
41DAP/39DAP | 0.72982 | 0.285 |
42DAP/41DAP | 0.98472 | 1 |
43DAP/42DAP | 0.82334 | 0.631 |
47DAP/43DAP | 0.87764 | 0.58 |
52DAP/47DAP | 1.37396 | 0.699 |
57DAP/52DAP | 1.00349 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07992 | 0.441 |
17DAP/reference | 1.06633 | 0.476 |
27DAP/reference | 1.02227 | 0.909 |
39DAP/reference | 0.99624 | 0.901 |
41DAP/reference | 1.01984 | 0.855 |
42DAP/reference | 0.96805 | 0.225 |
43DAP/reference | 1.04932 | 0.36 |
47DAP/reference | 0.93481 | 0.191 |
52DAP/reference | 0.80187 | 0.015 |
57DAP/reference | 0.74814 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00952 | 0.801 |
27DAP/17DAP | 0.99095 | 0.943 |
39DAP/27DAP | 1.03256 | 0.799 |
41DAP/39DAP | 0.74729 | 0.117 |
42DAP/41DAP | 1.40312 | 0.2 |
43DAP/42DAP | 0.94303 | 0.729 |
47DAP/43DAP | 1.22611 | 0.822 |
52DAP/47DAP | 1.14132 | 0.624 |
57DAP/52DAP | 1.17991 | 0.192 |
57DAP/7DAP | 1.12995 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91433 | 0.445 |
17DAP/reference | 1.24933 | 0.361 |
27DAP/reference | 1.05255 | 0.16 |
39DAP/reference | 1.07699 | 0.779 |
41DAP/reference | 0.94451 | 0.412 |
42DAP/reference | 1.20219 | 0.308 |
43DAP/reference | 0.97479 | 0.48 |
47DAP/reference | 1.0666 | 1 |
52DAP/reference | 1.05323 | 1 |
57DAP/reference | 0.93344 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98209 | 0.756 |
17DAP/reference | 1.20319 | 0.186 |
27DAP/reference | 1.13768 | 0.126 |
39DAP/reference | 0.87976 | 0.079 |
41DAP/reference | 0.98565 | 0.505 |
42DAP/reference | 0.89824 | 0.073 |
43DAP/reference | 0.93995 | 0.336 |
47DAP/reference | 0.89774 | 0.077 |
52DAP/reference | 0.85787 | 0.06 |
57DAP/reference | 0.89025 | 0.092 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97772 | 0.607 |
17DAP/reference | 0.99803 | 0.839 |
27DAP/reference | 0.95491 | 0.442 |
39DAP/reference | 0.99931 | 0.819 |
41DAP/reference | 0.94746 | 0.371 |
42DAP/reference | 0.97291 | 0.671 |
43DAP/reference | 0.97011 | 0.484 |
47DAP/reference | 0.76614 | 0.005 |
52DAP/reference | 0.89375 | 0.368 |
57DAP/reference | 0.79592 | 0.063 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9313 | 1 |
26DAP/20DAP | 2.84655 | 0.098 |
34DAP/26DAP | 0.78054 | 0.606 |
51DAP/34DAP | 1.16344 | 0.654 |
52DAP/51DAP | 0.95782 | 1 |
53DAP/52DAP | 0.8218 | 0.281 |
55DAP/53DAP | 0.79102 | 0.125 |
57DAP/55DAP | 1.24415 | 0.728 |
62DAP/57DAP | 0.97455 | 0.994 |
68DAP/62DAP | 0.78921 | 0.505 |
68DAP/14DAP | 0.88804 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.38642 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.88032 | 0.418 |
Mature Green Tomato/Ripe Tomato | 1.31529 | 0.881 |
Immature Eggplant/Mature Eggplant | 1.08367 | 0.278 |
Ripe Pepper/Ripe Tomato | 1.96794 | |
Mature Eggplant/Ripe Tomato | 2.78339 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02714 | 1 |
1-1-2/M82 | 0.95266 | |
12-2/M82 | 0.80727 | 0.955 |
12-4/M82 | 1.13677 | |
1-3/M82 | 0.76413 | 0.501 |
2-1-1/M82 | 1.15501 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.07239 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.85858 | 1 |
4-1/M82 | 1.109 | |
4-3-2/M82 | 0.8375 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.05569 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.71752 | |
7-1/M82 | 1.09745 | |
7-2/M82 | 1.00691 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.18928 | 0.277 |
IL2-6/WTpooled | 0.8757 | 0.383 |
IL7-5/WTpooled | 1.14453 | 0.495 |
IL7-3/WTpooled | 0.96181 | 0.418 |
IL12-4/WTpooled | 1.1196 | 0.516 |
IL1-4/WTpooled | 1.02417 | 1 |
WT/WTpooled | 0.92323 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11048 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93923 | 1 |
DC3000/delta hrp 6h | 1.01108 | 1 |
DC3000/delta hrp 12h | 1.09574 | 1 |
DC3000/delta hrp 24h | 1.05266 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99562 | 1 |
Exp 36h | 1.05658 | 1 |
Exp 60h | 1.09595 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05729 | 1 |
Var 0h | 1.05358 | 0.98 |
Var 12h I row2-row1 | 1.1145 | 0.654 |
Var 12h NI row2-row1 | 1.33889 | 0.649 |
Var 36h I row2-row1 | 1.18445 | 1 |
Var 36h NI row2-row1 | 1.14334 | 1 |
Var 60h I row2-row1 | 0.85965 | 0.285 |
Var 60h NI row2-row1 | 0.85863 | 0.932 |
Time course 0hI-0hNI | 0.94086 | 0.675 |
Time course 12hI-12hNI | 0.9842 | 0.914 |
Time course 36hI-36hNI | 1.01405 | 0.783 |
Time course 60hI-60hNI | 1.32155 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08424 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 0.78587 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.00941 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.09017 | 0.185 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07058 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.18537 | 0.307 |
Manapal/WT (break) | 1.06934 | 1 |
Manapal/WT (red) | N/A | N/A |
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