Expression of 1-1-4.3.6.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.1640.394
27DAP/17DAP1.148360.86
39DAP/27DAP0.769920.512
41DAP/39DAP1.352070.236
42DAP/41DAP1.215140.691
43DAP/42DAP1.111191
47DAP/43DAP1.829550.196
52DAP/47DAP0.894030.716
57DAP/52DAP1.467630.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.972120.39
17DAP/reference1.039560.166
27DAP/reference1.057810.216
39DAP/reference1.002060.903
41DAP/reference0.974290.667
42DAP/reference0.997350.608
43DAP/reference1.050640.306
47DAP/reference1.247660.001
52DAP/reference0.998090.749
57DAP/reference0.945540.165

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.146280.213
27DAP/17DAP1.132690.617
39DAP/27DAP1.234780.11
41DAP/39DAP0.662560.013
42DAP/41DAP1.234290.263
43DAP/42DAP1.141540.072
47DAP/43DAP1.100240.396
52DAP/47DAP0.991050.93
57DAP/52DAP0.999450.881
57DAP/7DAP1.312240.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.051760.732
17DAP/reference1.123310.477
27DAP/reference1.098071
39DAP/reference1.056930.909
41DAP/reference1.03820.723
42DAP/reference0.986270.612
43DAP/reference1.020771
47DAP/reference0.928710.293
52DAP/reference1.408620.025
57DAP/reference1.222610.117

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97560.669
17DAP/reference0.960350.337
27DAP/reference0.938750.249
39DAP/reference0.924140.016
41DAP/reference0.956250.156
42DAP/reference0.928940.089
43DAP/reference0.954480.394
47DAP/reference0.955510.09
52DAP/reference0.981050.28
57DAP/reference0.983220.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.071760.456
17DAP/reference0.980760.696
27DAP/reference1.17410.164
39DAP/reference6.149680.182
41DAP/reference1.077040.57
42DAP/reference1.080790.408
43DAP/reference1.264640.241
47DAP/reference1.409850.006
52DAP/reference1.319990.105
57DAP/reference1.012710.902

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.996321
26DAP/20DAP0.793230.512
34DAP/26DAP1.125691
51DAP/34DAP1.043610.795
52DAP/51DAP1.143210.662
53DAP/52DAP1.068410.83
55DAP/53DAP1.149210.689
57DAP/55DAP1.038330.865
62DAP/57DAP0.977410.994
68DAP/62DAP0.822040.052
68DAP/14DAP1.200780.436

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.73160.083

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.72143
Mature Green Tomato/Ripe Tomato0.201180.017
Immature Eggplant/Mature Eggplant4.460210.05
Ripe Pepper/Ripe Tomato0.289820.293
Mature Eggplant/Ripe Tomato0.658391

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.250480.742
1-1-2/M821.02718
12-2/M821.162550.61
12-4/M821.10291
1-3/M821.461980.277
2-1-1/M820.652480.465
2-1/M820.94733
2-6/M820.993661
3-2/M821.293210.549
4-1-1/M821.039571
4-1/M821.957961
4-3-2/M820.69102
4-3/M821.05148
5-3/M820.987741
6-2/M820.477990.497
6-3/M821.27661
7-1/M82N/AN/A
7-2/M821.018871
9-3-2/M821.629091

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.443310.277
IL2-6/WTpooled1.623450.46
IL7-5/WTpooled0.765091
IL7-3/WTpooled1.19441
IL12-4/WTpooled0.865690.581
IL1-4/WTpooled1.016661
WT/WTpooled1.002251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.286970.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.073980.875
DC3000/delta hrp 6h0.848930.95
DC3000/delta hrp 12h1.029531
DC3000/delta hrp 24h0.894250.166

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.776840.121

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.958650.328
Exp 36h1.718571
Exp 60h0.892090.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.009281
Var 0h0.527250.936
Var 12h I row2-row11.379850.196
Var 12h NI row2-row11.038551
Var 36h I row2-row11.013951
Var 36h NI row2-row11.40330.482
Var 60h I row2-row11.457830.562
Var 60h NI row2-row11.300740.4
Time course 0hI-0hNI0.928740.399
Time course 12hI-12hNI0.995421
Time course 36hI-36hNI0.653210.023
Time course 60hI-60hNI0.388180.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.902560.289
transgenic ySAMdc/azygous control (breaker)0.409920.118
transgenic ySAMdc/azygous control (red)0.963931

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.157680.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.240161

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.552920.14
Manapal/WT (break)3.081930.183
Manapal/WT (red)0.990070.863