Expression of 1-1-4.3.6.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.164 | 0.394 |
27DAP/17DAP | 1.14836 | 0.86 |
39DAP/27DAP | 0.76992 | 0.512 |
41DAP/39DAP | 1.35207 | 0.236 |
42DAP/41DAP | 1.21514 | 0.691 |
43DAP/42DAP | 1.11119 | 1 |
47DAP/43DAP | 1.82955 | 0.196 |
52DAP/47DAP | 0.89403 | 0.716 |
57DAP/52DAP | 1.46763 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97212 | 0.39 |
17DAP/reference | 1.03956 | 0.166 |
27DAP/reference | 1.05781 | 0.216 |
39DAP/reference | 1.00206 | 0.903 |
41DAP/reference | 0.97429 | 0.667 |
42DAP/reference | 0.99735 | 0.608 |
43DAP/reference | 1.05064 | 0.306 |
47DAP/reference | 1.24766 | 0.001 |
52DAP/reference | 0.99809 | 0.749 |
57DAP/reference | 0.94554 | 0.165 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14628 | 0.213 |
27DAP/17DAP | 1.13269 | 0.617 |
39DAP/27DAP | 1.23478 | 0.11 |
41DAP/39DAP | 0.66256 | 0.013 |
42DAP/41DAP | 1.23429 | 0.263 |
43DAP/42DAP | 1.14154 | 0.072 |
47DAP/43DAP | 1.10024 | 0.396 |
52DAP/47DAP | 0.99105 | 0.93 |
57DAP/52DAP | 0.99945 | 0.881 |
57DAP/7DAP | 1.31224 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05176 | 0.732 |
17DAP/reference | 1.12331 | 0.477 |
27DAP/reference | 1.09807 | 1 |
39DAP/reference | 1.05693 | 0.909 |
41DAP/reference | 1.0382 | 0.723 |
42DAP/reference | 0.98627 | 0.612 |
43DAP/reference | 1.02077 | 1 |
47DAP/reference | 0.92871 | 0.293 |
52DAP/reference | 1.40862 | 0.025 |
57DAP/reference | 1.22261 | 0.117 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9756 | 0.669 |
17DAP/reference | 0.96035 | 0.337 |
27DAP/reference | 0.93875 | 0.249 |
39DAP/reference | 0.92414 | 0.016 |
41DAP/reference | 0.95625 | 0.156 |
42DAP/reference | 0.92894 | 0.089 |
43DAP/reference | 0.95448 | 0.394 |
47DAP/reference | 0.95551 | 0.09 |
52DAP/reference | 0.98105 | 0.28 |
57DAP/reference | 0.98322 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07176 | 0.456 |
17DAP/reference | 0.98076 | 0.696 |
27DAP/reference | 1.1741 | 0.164 |
39DAP/reference | 6.14968 | 0.182 |
41DAP/reference | 1.07704 | 0.57 |
42DAP/reference | 1.08079 | 0.408 |
43DAP/reference | 1.26464 | 0.241 |
47DAP/reference | 1.40985 | 0.006 |
52DAP/reference | 1.31999 | 0.105 |
57DAP/reference | 1.01271 | 0.902 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99632 | 1 |
26DAP/20DAP | 0.79323 | 0.512 |
34DAP/26DAP | 1.12569 | 1 |
51DAP/34DAP | 1.04361 | 0.795 |
52DAP/51DAP | 1.14321 | 0.662 |
53DAP/52DAP | 1.06841 | 0.83 |
55DAP/53DAP | 1.14921 | 0.689 |
57DAP/55DAP | 1.03833 | 0.865 |
62DAP/57DAP | 0.97741 | 0.994 |
68DAP/62DAP | 0.82204 | 0.052 |
68DAP/14DAP | 1.20078 | 0.436 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.7316 | 0.083 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72143 | |
Mature Green Tomato/Ripe Tomato | 0.20118 | 0.017 |
Immature Eggplant/Mature Eggplant | 4.46021 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.28982 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.65839 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.25048 | 0.742 |
1-1-2/M82 | 1.02718 | |
12-2/M82 | 1.16255 | 0.61 |
12-4/M82 | 1.1029 | 1 |
1-3/M82 | 1.46198 | 0.277 |
2-1-1/M82 | 0.65248 | 0.465 |
2-1/M82 | 0.94733 | |
2-6/M82 | 0.99366 | 1 |
3-2/M82 | 1.29321 | 0.549 |
4-1-1/M82 | 1.03957 | 1 |
4-1/M82 | 1.95796 | 1 |
4-3-2/M82 | 0.69102 | |
4-3/M82 | 1.05148 | |
5-3/M82 | 0.98774 | 1 |
6-2/M82 | 0.47799 | 0.497 |
6-3/M82 | 1.2766 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.01887 | 1 |
9-3-2/M82 | 1.62909 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.44331 | 0.277 |
IL2-6/WTpooled | 1.62345 | 0.46 |
IL7-5/WTpooled | 0.76509 | 1 |
IL7-3/WTpooled | 1.1944 | 1 |
IL12-4/WTpooled | 0.86569 | 0.581 |
IL1-4/WTpooled | 1.01666 | 1 |
WT/WTpooled | 1.00225 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.28697 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07398 | 0.875 |
DC3000/delta hrp 6h | 0.84893 | 0.95 |
DC3000/delta hrp 12h | 1.02953 | 1 |
DC3000/delta hrp 24h | 0.89425 | 0.166 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.77684 | 0.121 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95865 | 0.328 |
Exp 36h | 1.71857 | 1 |
Exp 60h | 0.89209 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00928 | 1 |
Var 0h | 0.52725 | 0.936 |
Var 12h I row2-row1 | 1.37985 | 0.196 |
Var 12h NI row2-row1 | 1.03855 | 1 |
Var 36h I row2-row1 | 1.01395 | 1 |
Var 36h NI row2-row1 | 1.4033 | 0.482 |
Var 60h I row2-row1 | 1.45783 | 0.562 |
Var 60h NI row2-row1 | 1.30074 | 0.4 |
Time course 0hI-0hNI | 0.92874 | 0.399 |
Time course 12hI-12hNI | 0.99542 | 1 |
Time course 36hI-36hNI | 0.65321 | 0.023 |
Time course 60hI-60hNI | 0.38818 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90256 | 0.289 |
transgenic ySAMdc/azygous control (breaker) | 0.40992 | 0.118 |
transgenic ySAMdc/azygous control (red) | 0.96393 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.15768 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.24016 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.55292 | 0.14 |
Manapal/WT (break) | 3.08193 | 0.183 |
Manapal/WT (red) | 0.99007 | 0.863 |
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