Expression of 1-1-4.3.6.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02706 | 0.901 |
27DAP/17DAP | 1.22379 | 0.828 |
39DAP/27DAP | 0.62247 | 0.069 |
41DAP/39DAP | 1.43797 | 0.225 |
42DAP/41DAP | 1.13598 | 1 |
43DAP/42DAP | 1.23673 | 0.991 |
47DAP/43DAP | 1.11308 | 0.776 |
52DAP/47DAP | 1.12019 | 0.915 |
57DAP/52DAP | 0.86745 | 0.81 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99113 | 0.679 |
17DAP/reference | 1.07013 | 0.089 |
27DAP/reference | 1.13358 | 0.087 |
39DAP/reference | 1.00583 | 0.857 |
41DAP/reference | 0.97337 | 0.667 |
42DAP/reference | 0.94175 | 0.107 |
43DAP/reference | 1.15271 | 0.617 |
47DAP/reference | 1.00415 | 0.764 |
52DAP/reference | 0.77598 | 0.071 |
57DAP/reference | 0.86025 | 0.156 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97617 | 0.644 |
27DAP/17DAP | 1.0285 | 0.923 |
39DAP/27DAP | 1.05128 | 0.581 |
41DAP/39DAP | 1.02313 | 0.909 |
42DAP/41DAP | 1.02811 | 0.763 |
43DAP/42DAP | 1.05563 | 0.176 |
47DAP/43DAP | 1.01382 | 0.963 |
52DAP/47DAP | 1.00366 | 1 |
57DAP/52DAP | 0.93553 | 0.422 |
57DAP/7DAP | 1.03461 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93368 | 0.361 |
17DAP/reference | 0.95715 | 0.192 |
27DAP/reference | 0.9176 | 0.025 |
39DAP/reference | 0.94606 | 0.126 |
41DAP/reference | 0.95538 | 0.122 |
42DAP/reference | 0.95194 | 0.053 |
43DAP/reference | 0.8805 | 0.017 |
47DAP/reference | 0.9241 | 0.293 |
52DAP/reference | 0.92755 | 0.163 |
57DAP/reference | 0.94276 | 0.013 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98274 | 0.756 |
17DAP/reference | 0.95936 | 0.253 |
27DAP/reference | 1.15046 | 0.961 |
39DAP/reference | 0.93302 | 0.281 |
41DAP/reference | 0.94943 | 0.331 |
42DAP/reference | 0.94931 | 0.289 |
43DAP/reference | 1.1763 | 0.582 |
47DAP/reference | 0.9716 | 0.232 |
52DAP/reference | 0.94899 | 0.302 |
57DAP/reference | 1.09831 | 0.334 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94878 | 0.092 |
17DAP/reference | 0.99231 | 0.778 |
27DAP/reference | 1.04638 | 0.621 |
39DAP/reference | 0.82482 | 0.058 |
41DAP/reference | 0.97695 | 0.237 |
42DAP/reference | 0.77093 | 0.087 |
43DAP/reference | 0.86247 | 0.084 |
47DAP/reference | 0.93455 | 0.325 |
52DAP/reference | 0.92351 | 0.424 |
57DAP/reference | 0.70016 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04222 | 0.85 |
26DAP/20DAP | 0.9019 | 0.317 |
34DAP/26DAP | 0.95406 | 0.531 |
51DAP/34DAP | 1.09707 | 0.55 |
52DAP/51DAP | 1.02025 | 0.776 |
53DAP/52DAP | 1.00701 | 1 |
55DAP/53DAP | 0.9529 | 0.53 |
57DAP/55DAP | 1.01492 | 1 |
62DAP/57DAP | 0.89569 | 0.681 |
68DAP/62DAP | 0.94288 | 0.81 |
68DAP/14DAP | 1.15209 | 0.762 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89432 | 0.155 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.03578 | 0.726 |
Mature Green Tomato/Ripe Tomato | 0.90078 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.07666 | 1 |
Ripe Pepper/Ripe Tomato | 7.15644 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.55727 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95052 | 0.944 |
1-1-2/M82 | 0.90104 | 1 |
12-2/M82 | 1.16877 | 0.61 |
12-4/M82 | 0.97775 | 1 |
1-3/M82 | 0.85759 | 0.501 |
2-1-1/M82 | 1.63791 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.11141 | 0.594 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.91874 | 1 |
4-1/M82 | 1.01357 | |
4-3-2/M82 | 0.96294 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.95997 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.96352 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.94656 | |
9-3-2/M82 | 0.79285 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.70796 | 0.243 |
IL2-6/WTpooled | 1.27948 | 0.456 |
IL7-5/WTpooled | 1.47864 | 0.792 |
IL7-3/WTpooled | 0.76591 | 0.294 |
IL12-4/WTpooled | 0.97534 | 1 |
IL1-4/WTpooled | 0.90806 | 0.834 |
WT/WTpooled | 1.08683 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82858 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.85172 | 1 |
DC3000/delta hrp 6h | 1.22277 | 1 |
DC3000/delta hrp 12h | 0.96781 | 1 |
DC3000/delta hrp 24h | 0.90293 | 0.319 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04592 | 0.229 |
DC3000 delta B/DC3000 delta AB | 1.07472 | 0.443 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98123 | 1 |
Exp 36h | 1.28825 | 0.693 |
Exp 60h | 1.25887 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98005 | 1 |
Var 0h | 1.19868 | 0.782 |
Var 12h I row2-row1 | 1.13324 | 0.263 |
Var 12h NI row2-row1 | 1.06128 | 1 |
Var 36h I row2-row1 | 1.09922 | 1 |
Var 36h NI row2-row1 | 0.76825 | 0.645 |
Var 60h I row2-row1 | 1.3486 | 1 |
Var 60h NI row2-row1 | 1.11274 | 0.904 |
Time course 0hI-0hNI | 1.04086 | 0.867 |
Time course 12hI-12hNI | 0.97268 | 0.86 |
Time course 36hI-36hNI | 0.91421 | 0.171 |
Time course 60hI-60hNI | 1.06595 | 0.16 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.979 | 0.789 |
transgenic ySAMdc/azygous control (breaker) | 1.53297 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.43969 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96043 | 0.256 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.15025 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.01215 | 1 |
Manapal/WT (break) | 0.85114 | 1 |
Manapal/WT (red) | 1.5442 | 0.413 |
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