Expression of 1-1-4.3.6.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.027060.901
27DAP/17DAP1.223790.828
39DAP/27DAP0.622470.069
41DAP/39DAP1.437970.225
42DAP/41DAP1.135981
43DAP/42DAP1.236730.991
47DAP/43DAP1.113080.776
52DAP/47DAP1.120190.915
57DAP/52DAP0.867450.81

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.991130.679
17DAP/reference1.070130.089
27DAP/reference1.133580.087
39DAP/reference1.005830.857
41DAP/reference0.973370.667
42DAP/reference0.941750.107
43DAP/reference1.152710.617
47DAP/reference1.004150.764
52DAP/reference0.775980.071
57DAP/reference0.860250.156

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.976170.644
27DAP/17DAP1.02850.923
39DAP/27DAP1.051280.581
41DAP/39DAP1.023130.909
42DAP/41DAP1.028110.763
43DAP/42DAP1.055630.176
47DAP/43DAP1.013820.963
52DAP/47DAP1.003661
57DAP/52DAP0.935530.422
57DAP/7DAP1.034611

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.933680.361
17DAP/reference0.957150.192
27DAP/reference0.91760.025
39DAP/reference0.946060.126
41DAP/reference0.955380.122
42DAP/reference0.951940.053
43DAP/reference0.88050.017
47DAP/reference0.92410.293
52DAP/reference0.927550.163
57DAP/reference0.942760.013

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.982740.756
17DAP/reference0.959360.253
27DAP/reference1.150460.961
39DAP/reference0.933020.281
41DAP/reference0.949430.331
42DAP/reference0.949310.289
43DAP/reference1.17630.582
47DAP/reference0.97160.232
52DAP/reference0.948990.302
57DAP/reference1.098310.334

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.948780.092
17DAP/reference0.992310.778
27DAP/reference1.046380.621
39DAP/reference0.824820.058
41DAP/reference0.976950.237
42DAP/reference0.770930.087
43DAP/reference0.862470.084
47DAP/reference0.934550.325
52DAP/reference0.923510.424
57DAP/reference0.700160.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.042220.85
26DAP/20DAP0.90190.317
34DAP/26DAP0.954060.531
51DAP/34DAP1.097070.55
52DAP/51DAP1.020250.776
53DAP/52DAP1.007011
55DAP/53DAP0.95290.53
57DAP/55DAP1.014921
62DAP/57DAP0.895690.681
68DAP/62DAP0.942880.81
68DAP/14DAP1.152090.762

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.894320.155

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.035780.726
Mature Green Tomato/Ripe Tomato0.900780.411
Immature Eggplant/Mature Eggplant1.076661
Ripe Pepper/Ripe Tomato7.156440.258
Mature Eggplant/Ripe Tomato1.557270.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.950520.944
1-1-2/M820.901041
12-2/M821.168770.61
12-4/M820.977751
1-3/M820.857590.501
2-1-1/M821.63791
2-1/M82N/AN/A
2-6/M821.111410.594
3-2/M82N/AN/A
4-1-1/M820.918741
4-1/M821.01357
4-3-2/M820.962941
4-3/M82N/AN/A
5-3/M820.959971
6-2/M82N/AN/A
6-3/M820.963521
7-1/M82N/AN/A
7-2/M820.94656
9-3-2/M820.792850.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.707960.243
IL2-6/WTpooled1.279480.456
IL7-5/WTpooled1.478640.792
IL7-3/WTpooled0.765910.294
IL12-4/WTpooled0.975341
IL1-4/WTpooled0.908060.834
WT/WTpooled1.086831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.828580.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.851721
DC3000/delta hrp 6h1.222771
DC3000/delta hrp 12h0.967811
DC3000/delta hrp 24h0.902930.319

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.045920.229
DC3000 delta B/DC3000 delta AB1.074720.443

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.981231
Exp 36h1.288250.693
Exp 60h1.258870.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980051
Var 0h1.198680.782
Var 12h I row2-row11.133240.263
Var 12h NI row2-row11.061281
Var 36h I row2-row11.099221
Var 36h NI row2-row10.768250.645
Var 60h I row2-row11.34861
Var 60h NI row2-row11.112740.904
Time course 0hI-0hNI1.040860.867
Time course 12hI-12hNI0.972680.86
Time course 36hI-36hNI0.914210.171
Time course 60hI-60hNI1.065950.16

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.9790.789
transgenic ySAMdc/azygous control (breaker)1.532970.248
transgenic ySAMdc/azygous control (red)1.439690.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.960430.256

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.150250.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.012151
Manapal/WT (break)0.851141
Manapal/WT (red)1.54420.413