Expression of 1-1-4.3.6.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.73230.071
27DAP/17DAP0.988830.967
39DAP/27DAP2.237920.143
41DAP/39DAP0.778310.237
42DAP/41DAP1.062180.978
43DAP/42DAP0.839540.776
47DAP/43DAP1.243480.448
52DAP/47DAP1.252190.545
57DAP/52DAP1.523720.677

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.879060.162
17DAP/reference0.777950.018
27DAP/reference0.79320.037
39DAP/reference1.231220.377
41DAP/reference1.002841
42DAP/reference1.046860.191
43DAP/reference2.232780.007
47DAP/reference2.241970.001
52DAP/reference1.578810.008
57DAP/reference1.34630.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.875420.126
27DAP/17DAP1.109360.751
39DAP/27DAP0.883370.308
41DAP/39DAP1.065940.896
42DAP/41DAP1.126480.263
43DAP/42DAP0.850040.076
47DAP/43DAP1.183250.572
52DAP/47DAP0.843450.151
57DAP/52DAP1.004710.848
57DAP/7DAP1.140951

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.258290.078
17DAP/reference1.039881
27DAP/reference1.117790.131
39DAP/reference0.906820.23
41DAP/reference0.98470.565
42DAP/reference0.965410.482
43DAP/reference1.097530.241
47DAP/reference1.359510.145
52DAP/reference1.100520.563
57DAP/reference1.266460.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.927470.386
17DAP/reference0.756050.009
27DAP/reference1.010281
39DAP/reference1.053730.912
41DAP/reference0.851780.044
42DAP/reference0.981960.482
43DAP/reference0.841870.084
47DAP/reference1.081410.301
52DAP/reference0.925130.171
57DAP/reference0.846360.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.061441
17DAP/reference1.077360.932
27DAP/reference1.022940.934
39DAP/reference1.254540.33
41DAP/reference1.300410.074
42DAP/reference1.260420.134
43DAP/reference1.594850.123
47DAP/reference2.135120.005
52DAP/reference1.727890.098
57DAP/reference1.135530.132

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.310070.095
26DAP/20DAP1.489010.17
34DAP/26DAP0.892380.777
51DAP/34DAP1.108120.988
52DAP/51DAP1.140170.534
53DAP/52DAP0.923950.83
55DAP/53DAP1.543590.537
57DAP/55DAP1.08417
62DAP/57DAP1.027311
68DAP/62DAP0.773710.314
68DAP/14DAP1.156610.346

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.633150.081

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.394750.577
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.270930.293
Mature Eggplant/Ripe Tomato0.556061

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.033711
1-1-2/M821.119231
12-2/M821.105671
12-4/M820.931171
1-3/M821.109581
2-1-1/M820.832730.92
2-1/M820.69125
2-6/M820.951861
3-2/M82N/AN/A
4-1-1/M820.905421
4-1/M821.27244
4-3-2/M821.28025
4-3/M820.990651
5-3/M821.189151
6-2/M820.53925
6-3/M820.976481
7-1/M820.92327
7-2/M820.89986
9-3-2/M821.064521

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.154440.456
IL7-5/WTpooled0.91513
IL7-3/WTpooled1.049371
IL12-4/WTpooled0.964331
IL1-4/WTpooled1.130311
WT/WTpooled0.942731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.849230.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.102850.914
DC3000/delta hrp 6h1.079910.329
DC3000/delta hrp 12h1.040621
DC3000/delta hrp 24h1.02480.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.36115
DC3000 delta B/DC3000 delta AB0.859960.543

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.0111
Exp 36h1.088181
Exp 60h1.187450.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001711
Var 0h1.027811
Var 12h I row2-row11.175520.654
Var 12h NI row2-row11.112421
Var 36h I row2-row11.18350.41
Var 36h NI row2-row11.171681
Var 60h I row2-row10.965980.952
Var 60h NI row2-row10.868390.516
Time course 0hI-0hNI0.857410.112
Time course 12hI-12hNI1.034810.724
Time course 36hI-36hNI1.897520.01
Time course 60hI-60hNI1.18850.216

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.906120.391
transgenic ySAMdc/azygous control (breaker)0.678370.15
transgenic ySAMdc/azygous control (red)1.213880.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.966340.248

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.397170.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.430641
Manapal/WT (break)1.204841
Manapal/WT (red)1.226891