Expression of 1-1-4.3.6.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7323 | 0.071 |
27DAP/17DAP | 0.98883 | 0.967 |
39DAP/27DAP | 2.23792 | 0.143 |
41DAP/39DAP | 0.77831 | 0.237 |
42DAP/41DAP | 1.06218 | 0.978 |
43DAP/42DAP | 0.83954 | 0.776 |
47DAP/43DAP | 1.24348 | 0.448 |
52DAP/47DAP | 1.25219 | 0.545 |
57DAP/52DAP | 1.52372 | 0.677 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87906 | 0.162 |
17DAP/reference | 0.77795 | 0.018 |
27DAP/reference | 0.7932 | 0.037 |
39DAP/reference | 1.23122 | 0.377 |
41DAP/reference | 1.00284 | 1 |
42DAP/reference | 1.04686 | 0.191 |
43DAP/reference | 2.23278 | 0.007 |
47DAP/reference | 2.24197 | 0.001 |
52DAP/reference | 1.57881 | 0.008 |
57DAP/reference | 1.3463 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87542 | 0.126 |
27DAP/17DAP | 1.10936 | 0.751 |
39DAP/27DAP | 0.88337 | 0.308 |
41DAP/39DAP | 1.06594 | 0.896 |
42DAP/41DAP | 1.12648 | 0.263 |
43DAP/42DAP | 0.85004 | 0.076 |
47DAP/43DAP | 1.18325 | 0.572 |
52DAP/47DAP | 0.84345 | 0.151 |
57DAP/52DAP | 1.00471 | 0.848 |
57DAP/7DAP | 1.14095 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25829 | 0.078 |
17DAP/reference | 1.03988 | 1 |
27DAP/reference | 1.11779 | 0.131 |
39DAP/reference | 0.90682 | 0.23 |
41DAP/reference | 0.9847 | 0.565 |
42DAP/reference | 0.96541 | 0.482 |
43DAP/reference | 1.09753 | 0.241 |
47DAP/reference | 1.35951 | 0.145 |
52DAP/reference | 1.10052 | 0.563 |
57DAP/reference | 1.26646 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92747 | 0.386 |
17DAP/reference | 0.75605 | 0.009 |
27DAP/reference | 1.01028 | 1 |
39DAP/reference | 1.05373 | 0.912 |
41DAP/reference | 0.85178 | 0.044 |
42DAP/reference | 0.98196 | 0.482 |
43DAP/reference | 0.84187 | 0.084 |
47DAP/reference | 1.08141 | 0.301 |
52DAP/reference | 0.92513 | 0.171 |
57DAP/reference | 0.84636 | 0.03 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06144 | 1 |
17DAP/reference | 1.07736 | 0.932 |
27DAP/reference | 1.02294 | 0.934 |
39DAP/reference | 1.25454 | 0.33 |
41DAP/reference | 1.30041 | 0.074 |
42DAP/reference | 1.26042 | 0.134 |
43DAP/reference | 1.59485 | 0.123 |
47DAP/reference | 2.13512 | 0.005 |
52DAP/reference | 1.72789 | 0.098 |
57DAP/reference | 1.13553 | 0.132 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.31007 | 0.095 |
26DAP/20DAP | 1.48901 | 0.17 |
34DAP/26DAP | 0.89238 | 0.777 |
51DAP/34DAP | 1.10812 | 0.988 |
52DAP/51DAP | 1.14017 | 0.534 |
53DAP/52DAP | 0.92395 | 0.83 |
55DAP/53DAP | 1.54359 | 0.537 |
57DAP/55DAP | 1.08417 | |
62DAP/57DAP | 1.02731 | 1 |
68DAP/62DAP | 0.77371 | 0.314 |
68DAP/14DAP | 1.15661 | 0.346 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.63315 | 0.081 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.39475 | 0.577 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.27093 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.55606 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03371 | 1 |
1-1-2/M82 | 1.11923 | 1 |
12-2/M82 | 1.10567 | 1 |
12-4/M82 | 0.93117 | 1 |
1-3/M82 | 1.10958 | 1 |
2-1-1/M82 | 0.83273 | 0.92 |
2-1/M82 | 0.69125 | |
2-6/M82 | 0.95186 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.90542 | 1 |
4-1/M82 | 1.27244 | |
4-3-2/M82 | 1.28025 | |
4-3/M82 | 0.99065 | 1 |
5-3/M82 | 1.18915 | 1 |
6-2/M82 | 0.53925 | |
6-3/M82 | 0.97648 | 1 |
7-1/M82 | 0.92327 | |
7-2/M82 | 0.89986 | |
9-3-2/M82 | 1.06452 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.15444 | 0.456 |
IL7-5/WTpooled | 0.91513 | |
IL7-3/WTpooled | 1.04937 | 1 |
IL12-4/WTpooled | 0.96433 | 1 |
IL1-4/WTpooled | 1.13031 | 1 |
WT/WTpooled | 0.94273 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.84923 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10285 | 0.914 |
DC3000/delta hrp 6h | 1.07991 | 0.329 |
DC3000/delta hrp 12h | 1.04062 | 1 |
DC3000/delta hrp 24h | 1.0248 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.36115 | |
DC3000 delta B/DC3000 delta AB | 0.85996 | 0.543 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.011 | 1 |
Exp 36h | 1.08818 | 1 |
Exp 60h | 1.18745 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00171 | 1 |
Var 0h | 1.02781 | 1 |
Var 12h I row2-row1 | 1.17552 | 0.654 |
Var 12h NI row2-row1 | 1.11242 | 1 |
Var 36h I row2-row1 | 1.1835 | 0.41 |
Var 36h NI row2-row1 | 1.17168 | 1 |
Var 60h I row2-row1 | 0.96598 | 0.952 |
Var 60h NI row2-row1 | 0.86839 | 0.516 |
Time course 0hI-0hNI | 0.85741 | 0.112 |
Time course 12hI-12hNI | 1.03481 | 0.724 |
Time course 36hI-36hNI | 1.89752 | 0.01 |
Time course 60hI-60hNI | 1.1885 | 0.216 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90612 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 0.67837 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.21388 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96634 | 0.248 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.39717 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.43064 | 1 |
Manapal/WT (break) | 1.20484 | 1 |
Manapal/WT (red) | 1.22689 | 1 |
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