Expression of 1-1-4.3.7.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19225 | 0.575 |
27DAP/17DAP | 0.68509 | 0.082 |
39DAP/27DAP | 0.65138 | 0.376 |
41DAP/39DAP | 1.27908 | 0.591 |
42DAP/41DAP | 1.10306 | 0.899 |
43DAP/42DAP | 0.86845 | 0.806 |
47DAP/43DAP | 0.9009 | 0.58 |
52DAP/47DAP | 1.5009 | 0.538 |
57DAP/52DAP | 0.79803 | 0.82 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50311 | 0.008 |
17DAP/reference | 1.09645 | 0.22 |
27DAP/reference | 0.93839 | 0.295 |
39DAP/reference | 0.92522 | 0.188 |
41DAP/reference | 0.90732 | 0.154 |
42DAP/reference | 1.06592 | 0.299 |
43DAP/reference | 1.03803 | 0.73 |
47DAP/reference | 0.95751 | 0.224 |
52DAP/reference | 0.96831 | 0.36 |
57DAP/reference | 1.04312 | 0.853 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00049 | 0.899 |
27DAP/17DAP | 0.94981 | 0.854 |
39DAP/27DAP | 1.06021 | 0.718 |
41DAP/39DAP | 0.9635 | 0.923 |
42DAP/41DAP | 0.9868 | 0.812 |
43DAP/42DAP | 1.15957 | 0.028 |
47DAP/43DAP | 1.04382 | 0.848 |
52DAP/47DAP | 1.02311 | 0.962 |
57DAP/52DAP | 0.98747 | 0.773 |
57DAP/7DAP | 1.36099 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84494 | 0.246 |
17DAP/reference | 0.85432 | 0.025 |
27DAP/reference | 0.89562 | 0.135 |
39DAP/reference | 0.81834 | 0.083 |
41DAP/reference | 0.9934 | 0.589 |
42DAP/reference | 0.84681 | 0.023 |
43DAP/reference | 0.78943 | 0.016 |
47DAP/reference | 1.02159 | 1 |
52DAP/reference | 0.75683 | 0.026 |
57DAP/reference | 0.85711 | 0.064 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13889 | 0.384 |
17DAP/reference | 1.50801 | 0.03 |
27DAP/reference | 1.26781 | 0.156 |
39DAP/reference | 1.02872 | 1 |
41DAP/reference | 1.03935 | 0.846 |
42DAP/reference | 1.21963 | 0.02 |
43DAP/reference | 1.03788 | 0.89 |
47DAP/reference | 1.12946 | 0.01 |
52DAP/reference | 1.13513 | 0.029 |
57DAP/reference | 0.88841 | 0.063 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88817 | 0.127 |
17DAP/reference | 1.00982 | 0.825 |
27DAP/reference | 0.88277 | 0.051 |
39DAP/reference | 0.81821 | 0.04 |
41DAP/reference | 0.87341 | 0.237 |
42DAP/reference | 0.86999 | 0.172 |
43DAP/reference | 0.73401 | 0.03 |
47DAP/reference | 0.84507 | 0.072 |
52DAP/reference | 0.83861 | 0.268 |
57DAP/reference | 0.87892 | 0.225 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.8942 | 0.89 |
26DAP/20DAP | 0.72436 | 0.512 |
34DAP/26DAP | 0.95196 | 0.874 |
51DAP/34DAP | 1.02683 | 1 |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 0.97338 | 0.868 |
55DAP/53DAP | 1.35307 | 0.319 |
57DAP/55DAP | 1.25616 | 0.61 |
62DAP/57DAP | 0.71606 | 0.003 |
68DAP/62DAP | 1.0052 | 0.863 |
68DAP/14DAP | 1.03267 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.1862 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.81425 | 0.058 |
Mature Green Tomato/Ripe Tomato | 2.14292 | 0.028 |
Immature Eggplant/Mature Eggplant | 0.79899 | 0.176 |
Ripe Pepper/Ripe Tomato | 0.85165 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9069 | 0.944 |
1-1-2/M82 | 0.85618 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.89865 | 1 |
1-3/M82 | 0.83728 | |
2-1-1/M82 | 1.21734 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.11413 | 0.425 |
3-2/M82 | 1.27717 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.99743 | 1 |
4-3-2/M82 | 0.38444 | 1 |
4-3/M82 | 0.5168 | |
5-3/M82 | 0.91318 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.08626 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.82584 | |
9-3-2/M82 | 0.71957 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.57469 | 0.243 |
IL2-6/WTpooled | 0.94903 | 1 |
IL7-5/WTpooled | 1.65632 | 0.792 |
IL7-3/WTpooled | 0.9133 | 1 |
IL12-4/WTpooled | 0.93399 | 1 |
IL1-4/WTpooled | 0.87729 | 0.562 |
WT/WTpooled | 1.01191 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.80195 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01585 | 1 |
DC3000/delta hrp 6h | 1.04525 | 1 |
DC3000/delta hrp 12h | 0.95128 | 1 |
DC3000/delta hrp 24h | 0.90769 | 0.257 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.62133 | |
DC3000 delta B/DC3000 delta AB | 0.86852 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88553 | 1 |
Exp 36h | 1.55364 | 1 |
Exp 60h | 1.04404 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99392 | 1 |
Var 0h | 0.42421 | 1 |
Var 12h I row2-row1 | 1.06547 | 0.283 |
Var 12h NI row2-row1 | 0.78632 | 0.466 |
Var 36h I row2-row1 | 0.82606 | 0.805 |
Var 36h NI row2-row1 | 1.03557 | 1 |
Var 60h I row2-row1 | 1.33125 | 0.562 |
Var 60h NI row2-row1 | 1.23398 | 0.904 |
Time course 0hI-0hNI | 1.14248 | 0.537 |
Time course 12hI-12hNI | 1.0537 | 0.639 |
Time course 36hI-36hNI | 1.16713 | 0.016 |
Time course 60hI-60hNI | 1.34321 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91655 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 0.78512 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.18237 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01093 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.42557 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.97974 | 1 |
Manapal/WT (break) | 0.70639 | 1 |
Manapal/WT (red) | 1.07209 | 1 |
|
|