Expression of 1-1-4.3.7.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.192250.575
27DAP/17DAP0.685090.082
39DAP/27DAP0.651380.376
41DAP/39DAP1.279080.591
42DAP/41DAP1.103060.899
43DAP/42DAP0.868450.806
47DAP/43DAP0.90090.58
52DAP/47DAP1.50090.538
57DAP/52DAP0.798030.82

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.503110.008
17DAP/reference1.096450.22
27DAP/reference0.938390.295
39DAP/reference0.925220.188
41DAP/reference0.907320.154
42DAP/reference1.065920.299
43DAP/reference1.038030.73
47DAP/reference0.957510.224
52DAP/reference0.968310.36
57DAP/reference1.043120.853

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.000490.899
27DAP/17DAP0.949810.854
39DAP/27DAP1.060210.718
41DAP/39DAP0.96350.923
42DAP/41DAP0.98680.812
43DAP/42DAP1.159570.028
47DAP/43DAP1.043820.848
52DAP/47DAP1.023110.962
57DAP/52DAP0.987470.773
57DAP/7DAP1.360991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.844940.246
17DAP/reference0.854320.025
27DAP/reference0.895620.135
39DAP/reference0.818340.083
41DAP/reference0.99340.589
42DAP/reference0.846810.023
43DAP/reference0.789430.016
47DAP/reference1.021591
52DAP/reference0.756830.026
57DAP/reference0.857110.064

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.138890.384
17DAP/reference1.508010.03
27DAP/reference1.267810.156
39DAP/reference1.028721
41DAP/reference1.039350.846
42DAP/reference1.219630.02
43DAP/reference1.037880.89
47DAP/reference1.129460.01
52DAP/reference1.135130.029
57DAP/reference0.888410.063

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.888170.127
17DAP/reference1.009820.825
27DAP/reference0.882770.051
39DAP/reference0.818210.04
41DAP/reference0.873410.237
42DAP/reference0.869990.172
43DAP/reference0.734010.03
47DAP/reference0.845070.072
52DAP/reference0.838610.268
57DAP/reference0.878920.225

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.89420.89
26DAP/20DAP0.724360.512
34DAP/26DAP0.951960.874
51DAP/34DAP1.026831
52DAP/51DAPN/AN/A
53DAP/52DAP0.973380.868
55DAP/53DAP1.353070.319
57DAP/55DAP1.256160.61
62DAP/57DAP0.716060.003
68DAP/62DAP1.00520.863
68DAP/14DAP1.032671

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.18620.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.814250.058
Mature Green Tomato/Ripe Tomato2.142920.028
Immature Eggplant/Mature Eggplant0.798990.176
Ripe Pepper/Ripe Tomato0.85165
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.90690.944
1-1-2/M820.856181
12-2/M82N/AN/A
12-4/M820.898651
1-3/M820.83728
2-1-1/M821.21734
2-1/M82N/AN/A
2-6/M821.114130.425
3-2/M821.27717
4-1-1/M82N/AN/A
4-1/M820.997431
4-3-2/M820.384441
4-3/M820.5168
5-3/M820.913181
6-2/M82N/AN/A
6-3/M821.086261
7-1/M82N/AN/A
7-2/M820.82584
9-3-2/M820.71957

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.574690.243
IL2-6/WTpooled0.949031
IL7-5/WTpooled1.656320.792
IL7-3/WTpooled0.91331
IL12-4/WTpooled0.933991
IL1-4/WTpooled0.877290.562
WT/WTpooled1.011911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.801950.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.015851
DC3000/delta hrp 6h1.045251
DC3000/delta hrp 12h0.951281
DC3000/delta hrp 24h0.907690.257

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.62133
DC3000 delta B/DC3000 delta AB0.86852

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.885531
Exp 36h1.553641
Exp 60h1.044040.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.993921
Var 0h0.424211
Var 12h I row2-row11.065470.283
Var 12h NI row2-row10.786320.466
Var 36h I row2-row10.826060.805
Var 36h NI row2-row11.035571
Var 60h I row2-row11.331250.562
Var 60h NI row2-row11.233980.904
Time course 0hI-0hNI1.142480.537
Time course 12hI-12hNI1.05370.639
Time course 36hI-36hNI1.167130.016
Time course 60hI-60hNI1.343210.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.916550.529
transgenic ySAMdc/azygous control (breaker)0.785120.173
transgenic ySAMdc/azygous control (red)1.182371

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.010930.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.425570.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.979741
Manapal/WT (break)0.706391
Manapal/WT (red)1.072091