Expression of 1-1-4.3.7.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.031081
27DAP/17DAP1.201960.788
39DAP/27DAP0.788880.487
41DAP/39DAP1.191990.553
42DAP/41DAP0.96251
43DAP/42DAP1.134471
47DAP/43DAP0.95450.815
52DAP/47DAP0.901340.705
57DAP/52DAP1.082110.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.018681
17DAP/reference1.027830.907
27DAP/reference1.027710.934
39DAP/reference1.030830.857
41DAP/reference0.940930.542
42DAP/reference0.973250.287
43DAP/reference0.960990.448
47DAP/reference0.983390.418
52DAP/reference1.035860.991
57DAP/reference1.039130.876

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.029950.87
27DAP/17DAP1.05590.775
39DAP/27DAP1.004890.854
41DAP/39DAP1.046560.603
42DAP/41DAP0.973990.732
43DAP/42DAP1.000461
47DAP/43DAP0.988020.93
52DAP/47DAP1.008240.979
57DAP/52DAP1.023660.885
57DAP/7DAP1.038971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.885530.203
17DAP/reference0.880620.039
27DAP/reference0.810510.014
39DAP/reference0.95290.146
41DAP/reference0.961240.153
42DAP/reference0.842070.014
43DAP/reference0.886420.029
47DAP/reference0.828520.079
52DAP/reference0.905710.049
57DAP/reference0.910990.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.998970.831
17DAP/reference0.920930.287
27DAP/reference0.984430.576
39DAP/reference0.945410.348
41DAP/reference0.916630.277
42DAP/reference1.02950.723
43DAP/reference0.921280.344
47DAP/reference0.998310.695
52DAP/reference1.075050.789
57DAP/reference1.072020.626

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.982250.607
17DAP/reference0.882740.108
27DAP/reference0.945130.302
39DAP/reference0.822840.008
41DAP/reference0.931430.043
42DAP/reference0.824360.032
43DAP/reference0.905340.051
47DAP/reference0.920220.371
52DAP/reference0.812770.141
57DAP/reference0.862160.102

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.155380.966
26DAP/20DAP0.926390.512
34DAP/26DAP1.038321
51DAP/34DAP0.949810.546
52DAP/51DAP0.940961
53DAP/52DAP1.054060.537
55DAP/53DAP0.972480.735
57DAP/55DAP1.006130.955
62DAP/57DAP1.123460.393
68DAP/62DAP0.990570.914
68DAP/14DAP1.032390.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.978680.547

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.121280.881
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.68543
Mature Eggplant/Ripe Tomato1.420530.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.028610.877
1-1-2/M821.28651
12-2/M821.04354
12-4/M821.018641
1-3/M820.926670.378
2-1-1/M821.18014
2-1/M82N/AN/A
2-6/M821.012690.695
3-2/M820.964351
4-1-1/M820.97139
4-1/M820.722571
4-3-2/M821.02881
4-3/M820.77174
5-3/M821.020391
6-2/M821.26401
6-3/M821.136581
7-1/M820.926960.803
7-2/M821.012761
9-3-2/M820.748340.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.191170.427
IL7-5/WTpooled1.38675
IL7-3/WTpooled1.211470.362
IL12-4/WTpooled1.491440.516
IL1-4/WTpooled0.88661
WT/WTpooled0.986371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.49530.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.984151
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.245021
DC3000/delta hrp 24h1.012091

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.969720.92
DC3000 delta B/DC3000 delta AB1.0350.571

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.006761
Var 0h1.068470.421
Var 12h I row2-row11.139950.228
Var 12h NI row2-row10.970240.713
Var 36h I row2-row11.092331
Var 36h NI row2-row10.91050.478
Var 60h I row2-row11.178820.562
Var 60h NI row2-row11.104170.904
Time course 0hI-0hNI1.090540.764
Time course 12hI-12hNI1.035680.774
Time course 36hI-36hNI1.090350.166
Time course 60hI-60hNI1.335470.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)2.780491
transgenic ySAMdc/azygous control (red)1.435030.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.534740.037

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.880440.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.691590.222