Expression of 1-1-4.3.7.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03108 | 1 |
27DAP/17DAP | 1.20196 | 0.788 |
39DAP/27DAP | 0.78888 | 0.487 |
41DAP/39DAP | 1.19199 | 0.553 |
42DAP/41DAP | 0.9625 | 1 |
43DAP/42DAP | 1.13447 | 1 |
47DAP/43DAP | 0.9545 | 0.815 |
52DAP/47DAP | 0.90134 | 0.705 |
57DAP/52DAP | 1.08211 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01868 | 1 |
17DAP/reference | 1.02783 | 0.907 |
27DAP/reference | 1.02771 | 0.934 |
39DAP/reference | 1.03083 | 0.857 |
41DAP/reference | 0.94093 | 0.542 |
42DAP/reference | 0.97325 | 0.287 |
43DAP/reference | 0.96099 | 0.448 |
47DAP/reference | 0.98339 | 0.418 |
52DAP/reference | 1.03586 | 0.991 |
57DAP/reference | 1.03913 | 0.876 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02995 | 0.87 |
27DAP/17DAP | 1.0559 | 0.775 |
39DAP/27DAP | 1.00489 | 0.854 |
41DAP/39DAP | 1.04656 | 0.603 |
42DAP/41DAP | 0.97399 | 0.732 |
43DAP/42DAP | 1.00046 | 1 |
47DAP/43DAP | 0.98802 | 0.93 |
52DAP/47DAP | 1.00824 | 0.979 |
57DAP/52DAP | 1.02366 | 0.885 |
57DAP/7DAP | 1.03897 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88553 | 0.203 |
17DAP/reference | 0.88062 | 0.039 |
27DAP/reference | 0.81051 | 0.014 |
39DAP/reference | 0.9529 | 0.146 |
41DAP/reference | 0.96124 | 0.153 |
42DAP/reference | 0.84207 | 0.014 |
43DAP/reference | 0.88642 | 0.029 |
47DAP/reference | 0.82852 | 0.079 |
52DAP/reference | 0.90571 | 0.049 |
57DAP/reference | 0.91099 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99897 | 0.831 |
17DAP/reference | 0.92093 | 0.287 |
27DAP/reference | 0.98443 | 0.576 |
39DAP/reference | 0.94541 | 0.348 |
41DAP/reference | 0.91663 | 0.277 |
42DAP/reference | 1.0295 | 0.723 |
43DAP/reference | 0.92128 | 0.344 |
47DAP/reference | 0.99831 | 0.695 |
52DAP/reference | 1.07505 | 0.789 |
57DAP/reference | 1.07202 | 0.626 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98225 | 0.607 |
17DAP/reference | 0.88274 | 0.108 |
27DAP/reference | 0.94513 | 0.302 |
39DAP/reference | 0.82284 | 0.008 |
41DAP/reference | 0.93143 | 0.043 |
42DAP/reference | 0.82436 | 0.032 |
43DAP/reference | 0.90534 | 0.051 |
47DAP/reference | 0.92022 | 0.371 |
52DAP/reference | 0.81277 | 0.141 |
57DAP/reference | 0.86216 | 0.102 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15538 | 0.966 |
26DAP/20DAP | 0.92639 | 0.512 |
34DAP/26DAP | 1.03832 | 1 |
51DAP/34DAP | 0.94981 | 0.546 |
52DAP/51DAP | 0.94096 | 1 |
53DAP/52DAP | 1.05406 | 0.537 |
55DAP/53DAP | 0.97248 | 0.735 |
57DAP/55DAP | 1.00613 | 0.955 |
62DAP/57DAP | 1.12346 | 0.393 |
68DAP/62DAP | 0.99057 | 0.914 |
68DAP/14DAP | 1.03239 | 0.889 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97868 | 0.547 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.12128 | 0.881 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.68543 | |
Mature Eggplant/Ripe Tomato | 1.42053 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02861 | 0.877 |
1-1-2/M82 | 1.28651 | |
12-2/M82 | 1.04354 | |
12-4/M82 | 1.01864 | 1 |
1-3/M82 | 0.92667 | 0.378 |
2-1-1/M82 | 1.18014 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.01269 | 0.695 |
3-2/M82 | 0.96435 | 1 |
4-1-1/M82 | 0.97139 | |
4-1/M82 | 0.72257 | 1 |
4-3-2/M82 | 1.0288 | 1 |
4-3/M82 | 0.77174 | |
5-3/M82 | 1.02039 | 1 |
6-2/M82 | 1.26401 | |
6-3/M82 | 1.13658 | 1 |
7-1/M82 | 0.92696 | 0.803 |
7-2/M82 | 1.01276 | 1 |
9-3-2/M82 | 0.74834 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.19117 | 0.427 |
IL7-5/WTpooled | 1.38675 | |
IL7-3/WTpooled | 1.21147 | 0.362 |
IL12-4/WTpooled | 1.49144 | 0.516 |
IL1-4/WTpooled | 0.88661 | |
WT/WTpooled | 0.98637 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.4953 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98415 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.24502 | 1 |
DC3000/delta hrp 24h | 1.01209 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.96972 | 0.92 |
DC3000 delta B/DC3000 delta AB | 1.035 | 0.571 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00676 | 1 |
Var 0h | 1.06847 | 0.421 |
Var 12h I row2-row1 | 1.13995 | 0.228 |
Var 12h NI row2-row1 | 0.97024 | 0.713 |
Var 36h I row2-row1 | 1.09233 | 1 |
Var 36h NI row2-row1 | 0.9105 | 0.478 |
Var 60h I row2-row1 | 1.17882 | 0.562 |
Var 60h NI row2-row1 | 1.10417 | 0.904 |
Time course 0hI-0hNI | 1.09054 | 0.764 |
Time course 12hI-12hNI | 1.03568 | 0.774 |
Time course 36hI-36hNI | 1.09035 | 0.166 |
Time course 60hI-60hNI | 1.33547 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 2.78049 | 1 |
transgenic ySAMdc/azygous control (red) | 1.43503 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.53474 | 0.037 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.88044 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.69159 | 0.222 |
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