Expression of 1-1-4.3.8.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.13550.77
27DAP/17DAP0.967050.932
39DAP/27DAP1.016890.769
41DAP/39DAP1.239390.638
42DAP/41DAP1.294480.685
43DAP/42DAP1.19650.861
47DAP/43DAP1.727170.321
52DAP/47DAP1.260540.772
57DAP/52DAP1.140840.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.919820.254
17DAP/reference1.067340.166
27DAP/reference1.041980.529
39DAP/reference1.072210.197
41DAP/reference1.11440.062
42DAP/reference0.862920.011
43DAP/reference1.073010.287
47DAP/reference0.922820.116
52DAP/reference0.927650.292
57DAP/reference0.897920.138

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.189910.105
27DAP/17DAP0.886670.312
39DAP/27DAP0.936870.469
41DAP/39DAP1.108530.355
42DAP/41DAP0.932580.576
43DAP/42DAP0.959190.431
47DAP/43DAP0.99881
52DAP/47DAP0.95090.66
57DAP/52DAP0.916180.349
57DAP/7DAP1.021361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965080.55
17DAP/reference0.932910.253
27DAP/reference1.126350.301
39DAP/reference0.978080.552
41DAP/reference0.954850.431
42DAP/reference0.925850.248
43DAP/reference1.056560.707
47DAP/reference0.8890.293
52DAP/reference0.795640.083
57DAP/reference1.157840.468

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994180.77
17DAP/reference1.031640.941
27DAP/reference0.906360.212
39DAP/reference0.887030.14
41DAP/reference0.866910.061
42DAP/reference0.927840.261
43DAP/reference1.369690.04
47DAP/reference0.89630.041
52DAP/reference0.972710.407
57DAP/reference1.205450.07

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.944170.23
17DAP/reference1.171650.209
27DAP/reference1.121040.137
39DAP/reference1.207080.116
41DAP/reference0.963660.56
42DAP/reference0.917730.22
43DAP/reference0.729120.033
47DAP/reference1.027151
52DAP/reference0.902540.342
57DAP/reference0.639580.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.043910.966
26DAP/20DAP0.966381
34DAP/26DAP0.936210.675
51DAP/34DAP0.930230.649
52DAP/51DAP1.046250.733
53DAP/52DAP1.000151
55DAP/53DAP1.102630.599
57DAP/55DAP0.814520.19
62DAP/57DAP1.162780.622
68DAP/62DAP1.143050.778
68DAP/14DAP1.483920.179

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.29560.038

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.221540.014
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.439530.256
Mature Eggplant/Ripe Tomato0.967271

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.20273
1-1-2/M821.620351
12-2/M82N/AN/A
12-4/M820.92764
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.86319
3-2/M821.443020.84
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M822.113170.262
4-3/M82N/AN/A
5-3/M821.022771
6-2/M820.50573
6-3/M82N/AN/A
7-1/M820.95204
7-2/M821.11045
9-3-2/M822.191310.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.311910.493
IL2-6/WTpooled1.012970.788
IL7-5/WTpooled1.03614
IL7-3/WTpooled1.041121
IL12-4/WTpooled0.820980.71
IL1-4/WTpooled1.081671
WT/WTpooled0.894281

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.282391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.199730.914
DC3000/delta hrp 6h1.068691
DC3000/delta hrp 12h1.05891
DC3000/delta hrp 24h1.060470.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.72680.025
DC3000 delta B/DC3000 delta AB0.67790.022

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.81830.245
Exp 36h1.135241
Exp 60h0.901310.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99291
Var 0h3.60370.936
Var 12h I row2-row10.807340.357
Var 12h NI row2-row10.964170.627
Var 36h I row2-row10.892330.805
Var 36h NI row2-row11.212120.482
Var 60h I row2-row11.342850.562
Var 60h NI row2-row11.026321
Time course 0hI-0hNI0.950930.751
Time course 12hI-12hNI0.972380.752
Time course 36hI-36hNI0.858710.04
Time course 60hI-60hNI0.187930.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.980720.789
transgenic ySAMdc/azygous control (breaker)2.162410.172
transgenic ySAMdc/azygous control (red)1.057860.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007410.766

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.082041

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.466080.09
Manapal/WT (break)1.137331
Manapal/WT (red)0.8940.503