Expression of 1-1-4.3.8.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1355 | 0.77 |
27DAP/17DAP | 0.96705 | 0.932 |
39DAP/27DAP | 1.01689 | 0.769 |
41DAP/39DAP | 1.23939 | 0.638 |
42DAP/41DAP | 1.29448 | 0.685 |
43DAP/42DAP | 1.1965 | 0.861 |
47DAP/43DAP | 1.72717 | 0.321 |
52DAP/47DAP | 1.26054 | 0.772 |
57DAP/52DAP | 1.14084 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91982 | 0.254 |
17DAP/reference | 1.06734 | 0.166 |
27DAP/reference | 1.04198 | 0.529 |
39DAP/reference | 1.07221 | 0.197 |
41DAP/reference | 1.1144 | 0.062 |
42DAP/reference | 0.86292 | 0.011 |
43DAP/reference | 1.07301 | 0.287 |
47DAP/reference | 0.92282 | 0.116 |
52DAP/reference | 0.92765 | 0.292 |
57DAP/reference | 0.89792 | 0.138 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18991 | 0.105 |
27DAP/17DAP | 0.88667 | 0.312 |
39DAP/27DAP | 0.93687 | 0.469 |
41DAP/39DAP | 1.10853 | 0.355 |
42DAP/41DAP | 0.93258 | 0.576 |
43DAP/42DAP | 0.95919 | 0.431 |
47DAP/43DAP | 0.9988 | 1 |
52DAP/47DAP | 0.9509 | 0.66 |
57DAP/52DAP | 0.91618 | 0.349 |
57DAP/7DAP | 1.02136 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96508 | 0.55 |
17DAP/reference | 0.93291 | 0.253 |
27DAP/reference | 1.12635 | 0.301 |
39DAP/reference | 0.97808 | 0.552 |
41DAP/reference | 0.95485 | 0.431 |
42DAP/reference | 0.92585 | 0.248 |
43DAP/reference | 1.05656 | 0.707 |
47DAP/reference | 0.889 | 0.293 |
52DAP/reference | 0.79564 | 0.083 |
57DAP/reference | 1.15784 | 0.468 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99418 | 0.77 |
17DAP/reference | 1.03164 | 0.941 |
27DAP/reference | 0.90636 | 0.212 |
39DAP/reference | 0.88703 | 0.14 |
41DAP/reference | 0.86691 | 0.061 |
42DAP/reference | 0.92784 | 0.261 |
43DAP/reference | 1.36969 | 0.04 |
47DAP/reference | 0.8963 | 0.041 |
52DAP/reference | 0.97271 | 0.407 |
57DAP/reference | 1.20545 | 0.07 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94417 | 0.23 |
17DAP/reference | 1.17165 | 0.209 |
27DAP/reference | 1.12104 | 0.137 |
39DAP/reference | 1.20708 | 0.116 |
41DAP/reference | 0.96366 | 0.56 |
42DAP/reference | 0.91773 | 0.22 |
43DAP/reference | 0.72912 | 0.033 |
47DAP/reference | 1.02715 | 1 |
52DAP/reference | 0.90254 | 0.342 |
57DAP/reference | 0.63958 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04391 | 0.966 |
26DAP/20DAP | 0.96638 | 1 |
34DAP/26DAP | 0.93621 | 0.675 |
51DAP/34DAP | 0.93023 | 0.649 |
52DAP/51DAP | 1.04625 | 0.733 |
53DAP/52DAP | 1.00015 | 1 |
55DAP/53DAP | 1.10263 | 0.599 |
57DAP/55DAP | 0.81452 | 0.19 |
62DAP/57DAP | 1.16278 | 0.622 |
68DAP/62DAP | 1.14305 | 0.778 |
68DAP/14DAP | 1.48392 | 0.179 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.2956 | 0.038 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.22154 | 0.014 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.43953 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.96727 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.20273 | |
1-1-2/M82 | 1.62035 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.92764 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.86319 | |
3-2/M82 | 1.44302 | 0.84 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 2.11317 | 0.262 |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.02277 | 1 |
6-2/M82 | 0.50573 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.95204 | |
7-2/M82 | 1.11045 | |
9-3-2/M82 | 2.19131 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.31191 | 0.493 |
IL2-6/WTpooled | 1.01297 | 0.788 |
IL7-5/WTpooled | 1.03614 | |
IL7-3/WTpooled | 1.04112 | 1 |
IL12-4/WTpooled | 0.82098 | 0.71 |
IL1-4/WTpooled | 1.08167 | 1 |
WT/WTpooled | 0.89428 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.28239 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.19973 | 0.914 |
DC3000/delta hrp 6h | 1.06869 | 1 |
DC3000/delta hrp 12h | 1.0589 | 1 |
DC3000/delta hrp 24h | 1.06047 | 0.567 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.7268 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.6779 | 0.022 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.8183 | 0.245 |
Exp 36h | 1.13524 | 1 |
Exp 60h | 0.90131 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9929 | 1 |
Var 0h | 3.6037 | 0.936 |
Var 12h I row2-row1 | 0.80734 | 0.357 |
Var 12h NI row2-row1 | 0.96417 | 0.627 |
Var 36h I row2-row1 | 0.89233 | 0.805 |
Var 36h NI row2-row1 | 1.21212 | 0.482 |
Var 60h I row2-row1 | 1.34285 | 0.562 |
Var 60h NI row2-row1 | 1.02632 | 1 |
Time course 0hI-0hNI | 0.95093 | 0.751 |
Time course 12hI-12hNI | 0.97238 | 0.752 |
Time course 36hI-36hNI | 0.85871 | 0.04 |
Time course 60hI-60hNI | 0.18793 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98072 | 0.789 |
transgenic ySAMdc/azygous control (breaker) | 2.16241 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.05786 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00741 | 0.766 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.08204 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.46608 | 0.09 |
Manapal/WT (break) | 1.13733 | 1 |
Manapal/WT (red) | 0.894 | 0.503 |
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