Expression of 1-1-4.3.9.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.098240.739
27DAP/17DAP1.316960.847
39DAP/27DAP0.933480.641
41DAP/39DAP0.932840.772
42DAP/41DAP1.012291
43DAP/42DAP0.81060.7
47DAP/43DAP1.025251
52DAP/47DAP0.755380.429
57DAP/52DAP1.333640.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.147540.23
17DAP/reference1.107830.028
27DAP/reference1.04550.894
39DAP/reference1.081380.262
41DAP/reference1.165330.122
42DAP/reference1.006781
43DAP/reference1.048570.471
47DAP/reference0.951390.148
52DAP/reference0.895460.215
57DAP/reference0.728180.024

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.385230.871
27DAP/17DAP0.699520.475
39DAP/27DAP1.05640.779
41DAP/39DAP1.029171
42DAP/41DAP1.139840.651
43DAP/42DAP0.916950.558
47DAP/43DAP1.030580.948
52DAP/47DAP1.001210.959
57DAP/52DAP0.881980.596
57DAP/7DAP0.810791

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968060.246
17DAP/reference1.151510.03
27DAP/reference1.029920.16
39DAP/reference0.991050.552
41DAP/reference0.909650.034
42DAP/reference0.987040.436
43DAP/reference1.021840.408
47DAP/reference0.90440.293
52DAP/reference0.982630.363
57DAP/reference0.97240.176

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.197350.146
17DAP/reference1.108510.271
27DAP/reference1.024071
39DAP/reference0.909950.227
41DAP/reference0.884590.152
42DAP/reference0.827570.013
43DAP/reference1.240770.064
47DAP/reference0.822120.011
52DAP/reference1.073150.24
57DAP/reference1.444190.116

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.00391
17DAP/reference1.047340.854
27DAP/reference1.133330.057
39DAP/reference1.225850.011
41DAP/reference1.008451
42DAP/reference1.034041
43DAP/reference0.991860.712
47DAP/reference1.102290.847
52DAP/reference1.146640.228
57DAP/reference0.638770.067

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.128390.966
26DAP/20DAP0.579410.512
34DAP/26DAP0.937360.944
51DAP/34DAP0.854040.513
52DAP/51DAP1.086840.821
53DAP/52DAP0.404850.049
55DAP/53DAP0.910060.632
57DAP/55DAP1.304981
62DAP/57DAP1.176560.767
68DAP/62DAP0.750320.152
68DAP/14DAP0.825770.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.05051

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato14.28920.077
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.445151
Mature Eggplant/Ripe Tomato1.961030.25

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.911680.402
1-1-2/M820.73857
12-2/M821.090081
12-4/M821.04295
1-3/M820.803080.378
2-1-1/M821.10294
2-1/M820.87698
2-6/M821.052951
3-2/M820.96001
4-1-1/M821.073451
4-1/M821.13094
4-3-2/M820.89882
4-3/M820.889531
5-3/M820.96431
6-2/M820.978
6-3/M821.073381
7-1/M82N/AN/A
7-2/M821.018951
9-3-2/M820.87591

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.954561
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.173551
IL12-4/WTpooled1.171690.695
IL1-4/WTpooled0.75311
WT/WTpooled1.012061

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.842680.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.058270.921
DC3000/delta hrp 6h0.919860.95
DC3000/delta hrp 12h1.058371
DC3000/delta hrp 24h0.946980.575

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.773410.328
Exp 36h1.105691
Exp 60h1.078911

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.082131
Var 0h0.943811
Var 12h I row2-row11.119840.506
Var 12h NI row2-row11.02277
Var 36h I row2-row11.191421
Var 36h NI row2-row10.821670.706
Var 60h I row2-row10.945190.952
Var 60h NI row2-row10.83830.904
Time course 0hI-0hNI0.99660.662
Time course 12hI-12hNI1.034130.724
Time course 36hI-36hNI0.969850.45
Time course 60hI-60hNI1.381320.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.060290.612
transgenic ySAMdc/azygous control (breaker)0.973761
transgenic ySAMdc/azygous control (red)0.907181

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.021410.448

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.129520.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.777271
Manapal/WT (break)1.154910.381
Manapal/WT (red)1.142190.222