Expression of 1-1-4.3.9.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.801020.057
27DAP/17DAP1.328860.683
39DAP/27DAP1.504480.217
41DAP/39DAP0.665040.062
42DAP/41DAP1.174260.876
43DAP/42DAP1.20650.867
47DAP/43DAP0.939590.736
52DAP/47DAP0.871420.637
57DAP/52DAP1.282250.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.00620.756
17DAP/reference1.209390.22
27DAP/reference1.340680.014
39DAP/reference1.28110.169
41DAP/reference1.386880.016
42DAP/reference1.713150.001
43DAP/reference1.501050.008
47DAP/reference2.171850.001
52DAP/reference1.577440.009
57DAP/reference1.287760.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.772250.041
27DAP/17DAP1.199220.488
39DAP/27DAP1.053010.799
41DAP/39DAP1.153961
42DAP/41DAP1.149060.694
43DAP/42DAP1.011121
47DAP/43DAP0.976750.902
52DAP/47DAP1.005140.941
57DAP/52DAP1.304530.164
57DAP/7DAP1.57490.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092220.481
17DAP/reference1.083530.627
27DAP/reference1.11880.02
39DAP/reference1.098490.053
41DAP/reference1.136730.303
42DAP/reference1.13990.037
43DAP/reference1.454740.007
47DAP/reference1.579150.014
52DAP/reference1.1550.328
57DAP/reference1.159480.356

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.753750.027
17DAP/reference1.060730.773
27DAP/reference1.71010.052
39DAP/reference1.965230.011
41DAP/reference1.524450.005
42DAP/reference1.711320.007
43DAP/reference1.187860.997
47DAP/reference1.785710.008
52DAP/reference1.310680.014
57DAP/reference1.185710.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.998980.699
17DAP/reference0.940480.537
27DAP/reference1.14020.088
39DAP/reference1.259020.008
41DAP/reference1.053430.621
42DAP/reference1.356880.03
43DAP/reference1.604560.006
47DAP/reference2.558340.029
52DAP/reference1.792550.039
57DAP/reference1.696260.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.03821
26DAP/20DAP1.625150.12
34DAP/26DAP0.936840.741
51DAP/34DAP1.078520.746
52DAP/51DAP0.700660.151
53DAP/52DAP1.215230.117
55DAP/53DAP0.83330.13
57DAP/55DAP1.301610.694
62DAP/57DAP0.756450.162
68DAP/62DAP0.945450.722
68DAP/14DAP1.023021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.748570.061

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.815990.272
Mature Green Tomato/Ripe Tomato1.345580.478
Immature Eggplant/Mature Eggplant1.316740.085
Ripe Pepper/Ripe Tomato0.657280.224
Mature Eggplant/Ripe Tomato0.566860.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.068891
1-1-2/M821.509311
12-2/M821.091431
12-4/M821.415341
1-3/M822.63060.248
2-1-1/M821.048751
2-1/M820.801870.325
2-6/M820.831721
3-2/M821.29490.549
4-1-1/M820.933231
4-1/M820.83735
4-3-2/M821.127150.508
4-3/M821.305781
5-3/M820.844240.49
6-2/M821.18465
6-3/M821.074561
7-1/M821.083311
7-2/M821.267270.385
9-3-2/M821.196021

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.990451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.059260.724
DC3000/delta hrp 6h1.056841
DC3000/delta hrp 12h0.955081
DC3000/delta hrp 24h1.039790.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.06720.408
DC3000 delta B/DC3000 delta AB1.141930.298

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.128151
Exp 36h1.017481
Exp 60h1.083210.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997651
Var 0h0.50931
Var 12h I row2-row11.023941
Var 12h NI row2-row10.989011
Var 36h I row2-row11.380040.489
Var 36h NI row2-row11.193540.253
Var 60h I row2-row10.729490.306
Var 60h NI row2-row10.886060.866
Time course 0hI-0hNI1.093280.764
Time course 12hI-12hNI0.972340.815
Time course 36hI-36hNI1.115370.01
Time course 60hI-60hNI1.340670.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.01560.921
transgenic ySAMdc/azygous control (breaker)0.904140.251
transgenic ySAMdc/azygous control (red)1.208810.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.413950.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.06410.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.622321
Manapal/WT (break)0.942561
Manapal/WT (red)1.003461