Expression of 1-1-4.3.9.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.80102 | 0.057 |
27DAP/17DAP | 1.32886 | 0.683 |
39DAP/27DAP | 1.50448 | 0.217 |
41DAP/39DAP | 0.66504 | 0.062 |
42DAP/41DAP | 1.17426 | 0.876 |
43DAP/42DAP | 1.2065 | 0.867 |
47DAP/43DAP | 0.93959 | 0.736 |
52DAP/47DAP | 0.87142 | 0.637 |
57DAP/52DAP | 1.28225 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0062 | 0.756 |
17DAP/reference | 1.20939 | 0.22 |
27DAP/reference | 1.34068 | 0.014 |
39DAP/reference | 1.2811 | 0.169 |
41DAP/reference | 1.38688 | 0.016 |
42DAP/reference | 1.71315 | 0.001 |
43DAP/reference | 1.50105 | 0.008 |
47DAP/reference | 2.17185 | 0.001 |
52DAP/reference | 1.57744 | 0.009 |
57DAP/reference | 1.28776 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.77225 | 0.041 |
27DAP/17DAP | 1.19922 | 0.488 |
39DAP/27DAP | 1.05301 | 0.799 |
41DAP/39DAP | 1.15396 | 1 |
42DAP/41DAP | 1.14906 | 0.694 |
43DAP/42DAP | 1.01112 | 1 |
47DAP/43DAP | 0.97675 | 0.902 |
52DAP/47DAP | 1.00514 | 0.941 |
57DAP/52DAP | 1.30453 | 0.164 |
57DAP/7DAP | 1.5749 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09222 | 0.481 |
17DAP/reference | 1.08353 | 0.627 |
27DAP/reference | 1.1188 | 0.02 |
39DAP/reference | 1.09849 | 0.053 |
41DAP/reference | 1.13673 | 0.303 |
42DAP/reference | 1.1399 | 0.037 |
43DAP/reference | 1.45474 | 0.007 |
47DAP/reference | 1.57915 | 0.014 |
52DAP/reference | 1.155 | 0.328 |
57DAP/reference | 1.15948 | 0.356 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75375 | 0.027 |
17DAP/reference | 1.06073 | 0.773 |
27DAP/reference | 1.7101 | 0.052 |
39DAP/reference | 1.96523 | 0.011 |
41DAP/reference | 1.52445 | 0.005 |
42DAP/reference | 1.71132 | 0.007 |
43DAP/reference | 1.18786 | 0.997 |
47DAP/reference | 1.78571 | 0.008 |
52DAP/reference | 1.31068 | 0.014 |
57DAP/reference | 1.18571 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99898 | 0.699 |
17DAP/reference | 0.94048 | 0.537 |
27DAP/reference | 1.1402 | 0.088 |
39DAP/reference | 1.25902 | 0.008 |
41DAP/reference | 1.05343 | 0.621 |
42DAP/reference | 1.35688 | 0.03 |
43DAP/reference | 1.60456 | 0.006 |
47DAP/reference | 2.55834 | 0.029 |
52DAP/reference | 1.79255 | 0.039 |
57DAP/reference | 1.69626 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0382 | 1 |
26DAP/20DAP | 1.62515 | 0.12 |
34DAP/26DAP | 0.93684 | 0.741 |
51DAP/34DAP | 1.07852 | 0.746 |
52DAP/51DAP | 0.70066 | 0.151 |
53DAP/52DAP | 1.21523 | 0.117 |
55DAP/53DAP | 0.8333 | 0.13 |
57DAP/55DAP | 1.30161 | 0.694 |
62DAP/57DAP | 0.75645 | 0.162 |
68DAP/62DAP | 0.94545 | 0.722 |
68DAP/14DAP | 1.02302 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.74857 | 0.061 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.81599 | 0.272 |
Mature Green Tomato/Ripe Tomato | 1.34558 | 0.478 |
Immature Eggplant/Mature Eggplant | 1.31674 | 0.085 |
Ripe Pepper/Ripe Tomato | 0.65728 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.56686 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06889 | 1 |
1-1-2/M82 | 1.50931 | 1 |
12-2/M82 | 1.09143 | 1 |
12-4/M82 | 1.41534 | 1 |
1-3/M82 | 2.6306 | 0.248 |
2-1-1/M82 | 1.04875 | 1 |
2-1/M82 | 0.80187 | 0.325 |
2-6/M82 | 0.83172 | 1 |
3-2/M82 | 1.2949 | 0.549 |
4-1-1/M82 | 0.93323 | 1 |
4-1/M82 | 0.83735 | |
4-3-2/M82 | 1.12715 | 0.508 |
4-3/M82 | 1.30578 | 1 |
5-3/M82 | 0.84424 | 0.49 |
6-2/M82 | 1.18465 | |
6-3/M82 | 1.07456 | 1 |
7-1/M82 | 1.08331 | 1 |
7-2/M82 | 1.26727 | 0.385 |
9-3-2/M82 | 1.19602 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99045 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05926 | 0.724 |
DC3000/delta hrp 6h | 1.05684 | 1 |
DC3000/delta hrp 12h | 0.95508 | 1 |
DC3000/delta hrp 24h | 1.03979 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0672 | 0.408 |
DC3000 delta B/DC3000 delta AB | 1.14193 | 0.298 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12815 | 1 |
Exp 36h | 1.01748 | 1 |
Exp 60h | 1.08321 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99765 | 1 |
Var 0h | 0.5093 | 1 |
Var 12h I row2-row1 | 1.02394 | 1 |
Var 12h NI row2-row1 | 0.98901 | 1 |
Var 36h I row2-row1 | 1.38004 | 0.489 |
Var 36h NI row2-row1 | 1.19354 | 0.253 |
Var 60h I row2-row1 | 0.72949 | 0.306 |
Var 60h NI row2-row1 | 0.88606 | 0.866 |
Time course 0hI-0hNI | 1.09328 | 0.764 |
Time course 12hI-12hNI | 0.97234 | 0.815 |
Time course 36hI-36hNI | 1.11537 | 0.01 |
Time course 60hI-60hNI | 1.34067 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0156 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 0.90414 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.20881 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.41395 | 0.083 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0641 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.62232 | 1 |
Manapal/WT (break) | 0.94256 | 1 |
Manapal/WT (red) | 1.00346 | 1 |
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