Expression of 1-1-4.4.1.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.865190.413
27DAP/17DAP0.926060.846
39DAP/27DAP1.563840.173
41DAP/39DAP1.120210.859
42DAP/41DAP0.766170.774
43DAP/42DAP0.916240.829
47DAP/43DAP1.006750.934
52DAP/47DAP0.862210.618
57DAP/52DAP1.340040.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.290880.011
17DAP/reference1.027391
27DAP/reference1.045540.934
39DAP/reference0.934850.467
41DAP/reference0.857860.039
42DAP/reference1.183880.003
43DAP/reference1.052770.495
47DAP/reference1.210380.005
52DAP/reference0.969370.461
57DAP/reference1.136020.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.783010.056
27DAP/17DAP1.480010.088
39DAP/27DAP0.871560.256
41DAP/39DAP1.309840.284
42DAP/41DAP1.039470.836
43DAP/42DAP0.877720.149
47DAP/43DAP1.069250.822
52DAP/47DAP0.858260.22
57DAP/52DAP1.540330.077
57DAP/7DAP1.086511

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.208090.024
17DAP/reference1.20380.07
27DAP/reference1.737510.007
39DAP/reference1.423570.006
41DAP/reference1.522090.011
42DAP/reference1.664590.016
43DAP/reference1.552780.006
47DAP/reference1.555310.016
52DAP/reference1.891140.009
57DAP/reference1.255160.027

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.161740.258
17DAP/reference1.221080.07
27DAP/reference1.471210.017
39DAP/reference1.341350.011
41DAP/reference1.202470.039
42DAP/reference1.210940.031
43DAP/reference0.982140.539
47DAP/reference1.249940.024
52DAP/reference0.980820.537
57DAP/reference0.969920.519

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.089250.027
17DAP/reference0.961660.462
27DAP/reference1.267590.061
39DAP/reference1.217370.011
41DAP/reference1.106540.188
42DAP/reference1.119330.287
43DAP/reference1.131810.233
47DAP/reference0.949450.383
52DAP/reference1.273910.072
57DAP/reference1.311840.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.083940.966
26DAP/20DAP1.395080.288
34DAP/26DAP0.915330.848
51DAP/34DAP1.864030.038
52DAP/51DAP0.873691
53DAP/52DAP1.718310.086
55DAP/53DAP0.947040.698
57DAP/55DAP0.837320.415
62DAP/57DAP0.84210.681
68DAP/62DAP0.944490.787
68DAP/14DAP1.410180.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.21990.14

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.84380.304
Mature Green Tomato/Ripe Tomato0.813610.107
Immature Eggplant/Mature Eggplant1.192680.088
Ripe Pepper/Ripe Tomato0.963351
Mature Eggplant/Ripe Tomato1.167370.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.934310.907
1-1-2/M820.87381
12-2/M820.762210.862
12-4/M820.93982
1-3/M821.83760.26
2-1-1/M821.142891
2-1/M820.787070.322
2-6/M820.918641
3-2/M821.437950.426
4-1-1/M821.110431
4-1/M821.013641
4-3-2/M821.204121
4-3/M821.102311
5-3/M821.184550.572
6-2/M821.006771
6-3/M821.091381
7-1/M821.206960.598
7-2/M821.174910.324
9-3-2/M821.070931

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.873361
IL2-6/WTpooled0.99834
IL7-5/WTpooled0.812631
IL7-3/WTpooled0.87660.298
IL12-4/WTpooled1.051150.891
IL1-4/WTpooled0.950530.699
WT/WTpooled1.025271

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.210550.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.999721
DC3000/delta hrp 6h0.914640.95
DC3000/delta hrp 12h0.941731
DC3000/delta hrp 24h1.534020.041

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.114360.068
DC3000 delta B/DC3000 delta AB1.075610.524

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.103041
Exp 36h1.120231
Exp 60h1.062531

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.005821
Var 0h1.055790.98
Var 12h I row2-row11.028311
Var 12h NI row2-row10.996381
Var 36h I row2-row11.324170.298
Var 36h NI row2-row10.809120.382
Var 60h I row2-row10.985861
Var 60h NI row2-row10.744410.292
Time course 0hI-0hNI0.898730.226
Time course 12hI-12hNI1.264610.042
Time course 36hI-36hNI1.621150.006
Time course 60hI-60hNI1.901220.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.894610.234
transgenic ySAMdc/azygous control (breaker)0.934130.251
transgenic ySAMdc/azygous control (red)1.069050.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.267170.08

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.010141

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.780341
Manapal/WT (break)0.795520.299
Manapal/WT (red)1.017871