Expression of 1-1-4.4.1.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86519 | 0.413 |
27DAP/17DAP | 0.92606 | 0.846 |
39DAP/27DAP | 1.56384 | 0.173 |
41DAP/39DAP | 1.12021 | 0.859 |
42DAP/41DAP | 0.76617 | 0.774 |
43DAP/42DAP | 0.91624 | 0.829 |
47DAP/43DAP | 1.00675 | 0.934 |
52DAP/47DAP | 0.86221 | 0.618 |
57DAP/52DAP | 1.34004 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29088 | 0.011 |
17DAP/reference | 1.02739 | 1 |
27DAP/reference | 1.04554 | 0.934 |
39DAP/reference | 0.93485 | 0.467 |
41DAP/reference | 0.85786 | 0.039 |
42DAP/reference | 1.18388 | 0.003 |
43DAP/reference | 1.05277 | 0.495 |
47DAP/reference | 1.21038 | 0.005 |
52DAP/reference | 0.96937 | 0.461 |
57DAP/reference | 1.13602 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78301 | 0.056 |
27DAP/17DAP | 1.48001 | 0.088 |
39DAP/27DAP | 0.87156 | 0.256 |
41DAP/39DAP | 1.30984 | 0.284 |
42DAP/41DAP | 1.03947 | 0.836 |
43DAP/42DAP | 0.87772 | 0.149 |
47DAP/43DAP | 1.06925 | 0.822 |
52DAP/47DAP | 0.85826 | 0.22 |
57DAP/52DAP | 1.54033 | 0.077 |
57DAP/7DAP | 1.08651 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.20809 | 0.024 |
17DAP/reference | 1.2038 | 0.07 |
27DAP/reference | 1.73751 | 0.007 |
39DAP/reference | 1.42357 | 0.006 |
41DAP/reference | 1.52209 | 0.011 |
42DAP/reference | 1.66459 | 0.016 |
43DAP/reference | 1.55278 | 0.006 |
47DAP/reference | 1.55531 | 0.016 |
52DAP/reference | 1.89114 | 0.009 |
57DAP/reference | 1.25516 | 0.027 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16174 | 0.258 |
17DAP/reference | 1.22108 | 0.07 |
27DAP/reference | 1.47121 | 0.017 |
39DAP/reference | 1.34135 | 0.011 |
41DAP/reference | 1.20247 | 0.039 |
42DAP/reference | 1.21094 | 0.031 |
43DAP/reference | 0.98214 | 0.539 |
47DAP/reference | 1.24994 | 0.024 |
52DAP/reference | 0.98082 | 0.537 |
57DAP/reference | 0.96992 | 0.519 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.08925 | 0.027 |
17DAP/reference | 0.96166 | 0.462 |
27DAP/reference | 1.26759 | 0.061 |
39DAP/reference | 1.21737 | 0.011 |
41DAP/reference | 1.10654 | 0.188 |
42DAP/reference | 1.11933 | 0.287 |
43DAP/reference | 1.13181 | 0.233 |
47DAP/reference | 0.94945 | 0.383 |
52DAP/reference | 1.27391 | 0.072 |
57DAP/reference | 1.31184 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08394 | 0.966 |
26DAP/20DAP | 1.39508 | 0.288 |
34DAP/26DAP | 0.91533 | 0.848 |
51DAP/34DAP | 1.86403 | 0.038 |
52DAP/51DAP | 0.87369 | 1 |
53DAP/52DAP | 1.71831 | 0.086 |
55DAP/53DAP | 0.94704 | 0.698 |
57DAP/55DAP | 0.83732 | 0.415 |
62DAP/57DAP | 0.8421 | 0.681 |
68DAP/62DAP | 0.94449 | 0.787 |
68DAP/14DAP | 1.41018 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.2199 | 0.14 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.8438 | 0.304 |
Mature Green Tomato/Ripe Tomato | 0.81361 | 0.107 |
Immature Eggplant/Mature Eggplant | 1.19268 | 0.088 |
Ripe Pepper/Ripe Tomato | 0.96335 | 1 |
Mature Eggplant/Ripe Tomato | 1.16737 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93431 | 0.907 |
1-1-2/M82 | 0.8738 | 1 |
12-2/M82 | 0.76221 | 0.862 |
12-4/M82 | 0.93982 | |
1-3/M82 | 1.8376 | 0.26 |
2-1-1/M82 | 1.14289 | 1 |
2-1/M82 | 0.78707 | 0.322 |
2-6/M82 | 0.91864 | 1 |
3-2/M82 | 1.43795 | 0.426 |
4-1-1/M82 | 1.11043 | 1 |
4-1/M82 | 1.01364 | 1 |
4-3-2/M82 | 1.20412 | 1 |
4-3/M82 | 1.10231 | 1 |
5-3/M82 | 1.18455 | 0.572 |
6-2/M82 | 1.00677 | 1 |
6-3/M82 | 1.09138 | 1 |
7-1/M82 | 1.20696 | 0.598 |
7-2/M82 | 1.17491 | 0.324 |
9-3-2/M82 | 1.07093 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87336 | 1 |
IL2-6/WTpooled | 0.99834 | |
IL7-5/WTpooled | 0.81263 | 1 |
IL7-3/WTpooled | 0.8766 | 0.298 |
IL12-4/WTpooled | 1.05115 | 0.891 |
IL1-4/WTpooled | 0.95053 | 0.699 |
WT/WTpooled | 1.02527 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21055 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99972 | 1 |
DC3000/delta hrp 6h | 0.91464 | 0.95 |
DC3000/delta hrp 12h | 0.94173 | 1 |
DC3000/delta hrp 24h | 1.53402 | 0.041 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11436 | 0.068 |
DC3000 delta B/DC3000 delta AB | 1.07561 | 0.524 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10304 | 1 |
Exp 36h | 1.12023 | 1 |
Exp 60h | 1.06253 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00582 | 1 |
Var 0h | 1.05579 | 0.98 |
Var 12h I row2-row1 | 1.02831 | 1 |
Var 12h NI row2-row1 | 0.99638 | 1 |
Var 36h I row2-row1 | 1.32417 | 0.298 |
Var 36h NI row2-row1 | 0.80912 | 0.382 |
Var 60h I row2-row1 | 0.98586 | 1 |
Var 60h NI row2-row1 | 0.74441 | 0.292 |
Time course 0hI-0hNI | 0.89873 | 0.226 |
Time course 12hI-12hNI | 1.26461 | 0.042 |
Time course 36hI-36hNI | 1.62115 | 0.006 |
Time course 60hI-60hNI | 1.90122 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89461 | 0.234 |
transgenic ySAMdc/azygous control (breaker) | 0.93413 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.06905 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.26717 | 0.08 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01014 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.78034 | 1 |
Manapal/WT (break) | 0.79552 | 0.299 |
Manapal/WT (red) | 1.01787 | 1 |
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