Expression of 1-1-4.4.1.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.25560.224
27DAP/17DAP0.928180.947
39DAP/27DAP0.866040.549
41DAP/39DAP1.09560.982
42DAP/41DAP1.303210.813
43DAP/42DAP2.269430.682
47DAP/43DAP1.478620.769
52DAP/47DAP1.296010.932
57DAP/52DAP1.447910.839

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.410290.029
17DAP/reference1.385970.015
27DAP/reference1.159490.925
39DAP/reference1.387720.039
41DAP/reference1.513830.036
42DAP/reference1.184720.084
43DAP/reference0.879130.708
47DAP/reference1.114911
52DAP/reference1.002450.58
57DAP/reference0.76385

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.246910.319
27DAP/17DAP1.204540.848
39DAP/27DAP0.690910.215
41DAP/39DAP1.336220.362
42DAP/41DAP1.288940.687
43DAP/42DAP0.937630.875
47DAP/43DAP1.433970.805
52DAP/47DAP0.938170.907
57DAP/52DAP0.991990.804
57DAP/7DAP0.9212

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.73861
17DAP/reference0.35755
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/reference1.03467
42DAP/reference0.472110.021
43DAP/referenceN/AN/A
47DAP/referenceN/AN/A
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.228660.127
17DAP/reference1.134910.079
27DAP/reference1.344520.067
39DAP/reference1.162260.509
41DAP/reference1.428750.086
42DAP/reference1.81950.007
43DAP/reference1.578150.015
47DAP/reference1.255020.098
52DAP/reference0.818260.351
57DAP/reference1.28586

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.72581
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference1.22886
41DAP/referenceN/AN/A
42DAP/reference0.93531
43DAP/reference1.199480.803
47DAP/referenceN/AN/A
52DAP/referenceN/AN/A
57DAP/reference1.399130.012

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.015240.966
26DAP/20DAP1.49526
34DAP/26DAP0.954671
51DAP/34DAP0.933220.779
52DAP/51DAP3.0390.808
53DAP/52DAP1.230471
55DAP/53DAP1.995340.044
57DAP/55DAP2.269910.745
62DAP/57DAP1.616690.868
68DAP/62DAP1.565790.845
68DAP/14DAP1.95318

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.556320.246

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.727740.247
IL2-6/WTpooled1.084040.659
IL7-5/WTpooled1.299120.792
IL7-3/WTpooled0.891970.418
IL12-4/WTpooled0.831610.71
IL1-4/WTpooled1.079411
WT/WTpooled0.97551

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.023611
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.891770.122

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.725020.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.09661
Manapal/WT (red)N/AN/A