Expression of 1-1-4.4.1.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.70913 | 0.224 |
27DAP/17DAP | 1.8933 | 0.24 |
39DAP/27DAP | 5.36899 | 0.023 |
41DAP/39DAP | 2.154 | 0.229 |
42DAP/41DAP | 3.65873 | 0.023 |
43DAP/42DAP | 2.42669 | 0.799 |
47DAP/43DAP | 0.878 | 0.599 |
52DAP/47DAP | 0.53237 | 0.066 |
57DAP/52DAP | 1.57421 | 0.904 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.20994 | 0.024 |
17DAP/reference | 0.25029 | 0.007 |
27DAP/reference | 0.55489 | 0.032 |
39DAP/reference | 1.56819 | 0.816 |
41DAP/reference | 0.8052 | 0.154 |
42DAP/reference | 4.3058 | 0.001 |
43DAP/reference | 2.998 | 0.01 |
47DAP/reference | 3.37309 | 0.001 |
52DAP/reference | 1.4915 | 0.05 |
57DAP/reference | 1.40508 | 0.068 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21812 | 0.192 |
27DAP/17DAP | 1.08477 | 0.677 |
39DAP/27DAP | 4.5759 | 0.035 |
41DAP/39DAP | 0.29316 | 0.013 |
42DAP/41DAP | 2.71506 | 0.002 |
43DAP/42DAP | 4.16587 | 0.014 |
47DAP/43DAP | 0.84146 | 0.243 |
52DAP/47DAP | 1.24866 | 0.439 |
57DAP/52DAP | 1.18329 | 0.444 |
57DAP/7DAP | 3.58894 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.33572 | 0.056 |
17DAP/reference | 0.35858 | 0.011 |
27DAP/reference | 0.45517 | 0.012 |
39DAP/reference | 0.68599 | 0.023 |
41DAP/reference | 0.49303 | 0.012 |
42DAP/reference | 0.99424 | 0.531 |
43DAP/reference | 1.42786 | 0.07 |
47DAP/reference | 2.5517 | 0.014 |
52DAP/reference | 0.67629 | 0.01 |
57DAP/reference | 0.65518 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.2307 | 0.005 |
17DAP/reference | 0.20164 | 0.003 |
27DAP/reference | 0.3155 | 0.006 |
39DAP/reference | 0.31329 | 0.008 |
41DAP/reference | 0.40588 | 0.005 |
42DAP/reference | 0.37497 | 0.01 |
43DAP/reference | 0.33515 | 0.002 |
47DAP/reference | 0.65465 | 0.046 |
52DAP/reference | 0.24416 | 0.003 |
57DAP/reference | 0.31445 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.28757 | 0.026 |
17DAP/reference | 0.60452 | 0.092 |
27DAP/reference | 0.32692 | 0.022 |
39DAP/reference | 0.37189 | 0.007 |
41DAP/reference | 0.58142 | 0.019 |
42DAP/reference | 3.76978 | 0.007 |
43DAP/reference | 5.76875 | 0.007 |
47DAP/reference | 4.01888 | 0.005 |
52DAP/reference | 3.00147 | 0.044 |
57DAP/reference | 2.23344 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.34399 | 0.966 |
26DAP/20DAP | 0.90825 | 1 |
34DAP/26DAP | 1.08341 | 1 |
51DAP/34DAP | 0.82896 | 0.537 |
52DAP/51DAP | 0.94707 | 1 |
53DAP/52DAP | 1.05651 | 0.783 |
55DAP/53DAP | 1.04738 | 0.893 |
57DAP/55DAP | 1.26098 | 0.242 |
62DAP/57DAP | 0.97891 | 0.994 |
68DAP/62DAP | 1.05406 | 1 |
68DAP/14DAP | 0.91021 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 18.6489 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.64859 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.15785 | 0.017 |
Immature Eggplant/Mature Eggplant | 4.80929 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.0669 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.08736 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.20311 | 0.877 |
1-1-2/M82 | 1.35686 | 1 |
12-2/M82 | 1.06075 | 1 |
12-4/M82 | 1.88234 | 1 |
1-3/M82 | 2.4615 | 0.248 |
2-1-1/M82 | 0.80689 | 0.465 |
2-1/M82 | 0.89889 | 1 |
2-6/M82 | 0.91905 | 1 |
3-2/M82 | 1.06707 | 0.84 |
4-1-1/M82 | 0.84873 | 1 |
4-1/M82 | 0.94736 | |
4-3-2/M82 | 1.12546 | 1 |
4-3/M82 | 0.89684 | 1 |
5-3/M82 | 0.93095 | 1 |
6-2/M82 | 1.00496 | 1 |
6-3/M82 | 0.94915 | 1 |
7-1/M82 | 0.969 | 0.803 |
7-2/M82 | 0.90796 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 2.11766 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.84552 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.28909 | 0.193 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06997 | 0.921 |
DC3000/delta hrp 6h | 0.79387 | 0.95 |
DC3000/delta hrp 12h | 1.47481 | 1 |
DC3000/delta hrp 24h | 0.6483 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.96535 | 1 |
DC3000 delta B/DC3000 delta AB | 1.0429 | 0.609 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.44278 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.16269 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.20889 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.67011 | 0.026 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.39294 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.45208 | 0.096 |
Manapal/WT (break) | 1.2675 | 0.183 |
Manapal/WT (red) | 0.69427 | 0.199 |
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