Expression of 1-1-4.4.1.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.709130.224
27DAP/17DAP1.89330.24
39DAP/27DAP5.368990.023
41DAP/39DAP2.1540.229
42DAP/41DAP3.658730.023
43DAP/42DAP2.426690.799
47DAP/43DAP0.8780.599
52DAP/47DAP0.532370.066
57DAP/52DAP1.574210.904

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.209940.024
17DAP/reference0.250290.007
27DAP/reference0.554890.032
39DAP/reference1.568190.816
41DAP/reference0.80520.154
42DAP/reference4.30580.001
43DAP/reference2.9980.01
47DAP/reference3.373090.001
52DAP/reference1.49150.05
57DAP/reference1.405080.068

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.218120.192
27DAP/17DAP1.084770.677
39DAP/27DAP4.57590.035
41DAP/39DAP0.293160.013
42DAP/41DAP2.715060.002
43DAP/42DAP4.165870.014
47DAP/43DAP0.841460.243
52DAP/47DAP1.248660.439
57DAP/52DAP1.183290.444
57DAP/7DAP3.588940.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.335720.056
17DAP/reference0.358580.011
27DAP/reference0.455170.012
39DAP/reference0.685990.023
41DAP/reference0.493030.012
42DAP/reference0.994240.531
43DAP/reference1.427860.07
47DAP/reference2.55170.014
52DAP/reference0.676290.01
57DAP/reference0.655180.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.23070.005
17DAP/reference0.201640.003
27DAP/reference0.31550.006
39DAP/reference0.313290.008
41DAP/reference0.405880.005
42DAP/reference0.374970.01
43DAP/reference0.335150.002
47DAP/reference0.654650.046
52DAP/reference0.244160.003
57DAP/reference0.314450.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.287570.026
17DAP/reference0.604520.092
27DAP/reference0.326920.022
39DAP/reference0.371890.007
41DAP/reference0.581420.019
42DAP/reference3.769780.007
43DAP/reference5.768750.007
47DAP/reference4.018880.005
52DAP/reference3.001470.044
57DAP/reference2.233440.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.343990.966
26DAP/20DAP0.908251
34DAP/26DAP1.083411
51DAP/34DAP0.828960.537
52DAP/51DAP0.947071
53DAP/52DAP1.056510.783
55DAP/53DAP1.047380.893
57DAP/55DAP1.260980.242
62DAP/57DAP0.978910.994
68DAP/62DAP1.054061
68DAP/14DAP0.910211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker18.64890.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.648590.058
Mature Green Tomato/Ripe Tomato0.157850.017
Immature Eggplant/Mature Eggplant4.809290.05
Ripe Pepper/Ripe Tomato0.06690.224
Mature Eggplant/Ripe Tomato0.087360.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.203110.877
1-1-2/M821.356861
12-2/M821.060751
12-4/M821.882341
1-3/M822.46150.248
2-1-1/M820.806890.465
2-1/M820.898891
2-6/M820.919051
3-2/M821.067070.84
4-1-1/M820.848731
4-1/M820.94736
4-3-2/M821.125461
4-3/M820.896841
5-3/M820.930951
6-2/M821.004961
6-3/M820.949151
7-1/M820.9690.803
7-2/M820.907960.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled2.11766
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.84552
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.289090.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.069970.921
DC3000/delta hrp 6h0.793870.95
DC3000/delta hrp 12h1.474811
DC3000/delta hrp 24h0.64830.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.965351
DC3000 delta B/DC3000 delta AB1.04290.609

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.442780.246
transgenic ySAMdc/azygous control (breaker)1.162690.248
transgenic ySAMdc/azygous control (red)1.208890.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.670110.026

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.392940.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.452080.096
Manapal/WT (break)1.26750.183
Manapal/WT (red)0.694270.199