Expression of 1-1-4.4.1.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1069 | 0.798 |
27DAP/17DAP | 0.97097 | 0.982 |
39DAP/27DAP | 1.3575 | 0.236 |
41DAP/39DAP | 0.60692 | 0.051 |
42DAP/41DAP | 1.001 | 1 |
43DAP/42DAP | 1.04186 | 0.937 |
47DAP/43DAP | 0.91137 | 0.696 |
52DAP/47DAP | 0.89883 | 0.693 |
57DAP/52DAP | 1.17425 | 0.918 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24674 | 0.011 |
17DAP/reference | 1.11278 | 0.022 |
27DAP/reference | 1.01218 | 0.996 |
39DAP/reference | 1.05284 | 0.497 |
41DAP/reference | 1.01393 | 0.91 |
42DAP/reference | 1.23519 | 0.001 |
43DAP/reference | 1.01915 | 0.866 |
47DAP/reference | 1.12827 | 0.037 |
52DAP/reference | 0.9817 | 0.53 |
57DAP/reference | 0.97257 | 0.503 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.25459 | 0.07 |
27DAP/17DAP | 1.07666 | 0.836 |
39DAP/27DAP | 0.59954 | 0.035 |
41DAP/39DAP | 1.0886 | 0.69 |
42DAP/41DAP | 1.02794 | 1 |
43DAP/42DAP | 1.02295 | 1 |
47DAP/43DAP | 1.00336 | 0.998 |
52DAP/47DAP | 1.05236 | 0.856 |
57DAP/52DAP | 1.12427 | 0.688 |
57DAP/7DAP | 0.89442 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23434 | 0.048 |
17DAP/reference | 1.60184 | 0.006 |
27DAP/reference | 1.64219 | 0.006 |
39DAP/reference | 1.75649 | 0.006 |
41DAP/reference | 1.41293 | 0.022 |
42DAP/reference | 1.36761 | 0.021 |
43DAP/reference | 1.19019 | 0.063 |
47DAP/reference | 1.19102 | 0.029 |
52DAP/reference | 1.30605 | 0.092 |
57DAP/reference | 1.2852 | 0.043 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26323 | 0.187 |
17DAP/reference | 1.37693 | 0.031 |
27DAP/reference | 1.36382 | 0.07 |
39DAP/reference | 1.53354 | 0.013 |
41DAP/reference | 1.40923 | 0.025 |
42DAP/reference | 1.28435 | 0.026 |
43DAP/reference | 1.18432 | 0.255 |
47DAP/reference | 1.22621 | 0.015 |
52DAP/reference | 1.19176 | 0.012 |
57DAP/reference | 1.14991 | 0.387 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16704 | 0.138 |
17DAP/reference | 1.19923 | 0.111 |
27DAP/reference | 1.23378 | 0.03 |
39DAP/reference | 1.40033 | 0.009 |
41DAP/reference | 1.26896 | 0.015 |
42DAP/reference | 1.34868 | 0.015 |
43DAP/reference | 1.16167 | 0.076 |
47DAP/reference | 1.02573 | 0.73 |
52DAP/reference | 1.07764 | 0.77 |
57DAP/reference | 1.16051 | 0.171 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00288 | 1 |
26DAP/20DAP | 1.79677 | 0.265 |
34DAP/26DAP | 1.39653 | 0.542 |
51DAP/34DAP | 0.94768 | 0.758 |
52DAP/51DAP | 1.40052 | 0.238 |
53DAP/52DAP | 0.70424 | 0.094 |
55DAP/53DAP | 1.20167 | 0.737 |
57DAP/55DAP | 0.81592 | 0.19 |
62DAP/57DAP | 0.8922 | 0.088 |
68DAP/62DAP | 0.9834 | 0.885 |
68DAP/14DAP | 0.98021 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.47912 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.87599 | 0.176 |
Mature Green Tomato/Ripe Tomato | 1.90742 | 0.018 |
Immature Eggplant/Mature Eggplant | 0.85651 | 0.366 |
Ripe Pepper/Ripe Tomato | 0.39145 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.38553 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98298 | 0.961 |
1-1-2/M82 | 1.00761 | 1 |
12-2/M82 | 0.82853 | 0.955 |
12-4/M82 | 0.84876 | 0.319 |
1-3/M82 | 1.49856 | 0.479 |
2-1-1/M82 | 0.96808 | 1 |
2-1/M82 | 1.04206 | 0.345 |
2-6/M82 | 1.05615 | 0.425 |
3-2/M82 | 1.09755 | |
4-1-1/M82 | 1.20147 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.79756 | 0.241 |
4-3/M82 | 1.47697 | 1 |
5-3/M82 | 1.19855 | 0.572 |
6-2/M82 | 1.07573 | |
6-3/M82 | 1.13672 | 1 |
7-1/M82 | 1.04984 | 1 |
7-2/M82 | 1.42387 | 0.324 |
9-3-2/M82 | 1.24249 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.94429 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.10784 | 1 |
IL7-3/WTpooled | 0.98283 | |
IL12-4/WTpooled | 0.96176 | 1 |
IL1-4/WTpooled | 1.24011 | 1 |
WT/WTpooled | 1.00477 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.987 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06023 | 0.921 |
DC3000/delta hrp 6h | 0.9934 | 0.95 |
DC3000/delta hrp 12h | 1.12074 | 1 |
DC3000/delta hrp 24h | 0.91311 | 0.285 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07035 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.02269 | 0.694 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98933 | 1 |
Exp 36h | 1.02638 | 1 |
Exp 60h | 0.97426 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01435 | 1 |
Var 0h | 0.94037 | 1 |
Var 12h I row2-row1 | 0.83834 | 0.357 |
Var 12h NI row2-row1 | 1.08149 | 1 |
Var 36h I row2-row1 | 1.06289 | 1 |
Var 36h NI row2-row1 | 5.36124 | 1 |
Var 60h I row2-row1 | 1.41724 | 1 |
Var 60h NI row2-row1 | 1.03833 | 0.904 |
Time course 0hI-0hNI | 0.98167 | 0.942 |
Time course 12hI-12hNI | 0.96211 | 0.716 |
Time course 36hI-36hNI | 0.82659 | 0.03 |
Time course 60hI-60hNI | 0.42235 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98309 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.14163 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.11916 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.1838 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04191 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.54087 | 0.172 |
Manapal/WT (break) | 0.83933 | 0.333 |
Manapal/WT (red) | 0.94769 | 0.242 |
|
|