Expression of 1-1-4.4.1.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.10690.798
27DAP/17DAP0.970970.982
39DAP/27DAP1.35750.236
41DAP/39DAP0.606920.051
42DAP/41DAP1.0011
43DAP/42DAP1.041860.937
47DAP/43DAP0.911370.696
52DAP/47DAP0.898830.693
57DAP/52DAP1.174250.918

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.246740.011
17DAP/reference1.112780.022
27DAP/reference1.012180.996
39DAP/reference1.052840.497
41DAP/reference1.013930.91
42DAP/reference1.235190.001
43DAP/reference1.019150.866
47DAP/reference1.128270.037
52DAP/reference0.98170.53
57DAP/reference0.972570.503

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.254590.07
27DAP/17DAP1.076660.836
39DAP/27DAP0.599540.035
41DAP/39DAP1.08860.69
42DAP/41DAP1.027941
43DAP/42DAP1.022951
47DAP/43DAP1.003360.998
52DAP/47DAP1.052360.856
57DAP/52DAP1.124270.688
57DAP/7DAP0.894421

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.234340.048
17DAP/reference1.601840.006
27DAP/reference1.642190.006
39DAP/reference1.756490.006
41DAP/reference1.412930.022
42DAP/reference1.367610.021
43DAP/reference1.190190.063
47DAP/reference1.191020.029
52DAP/reference1.306050.092
57DAP/reference1.28520.043

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.263230.187
17DAP/reference1.376930.031
27DAP/reference1.363820.07
39DAP/reference1.533540.013
41DAP/reference1.409230.025
42DAP/reference1.284350.026
43DAP/reference1.184320.255
47DAP/reference1.226210.015
52DAP/reference1.191760.012
57DAP/reference1.149910.387

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.167040.138
17DAP/reference1.199230.111
27DAP/reference1.233780.03
39DAP/reference1.400330.009
41DAP/reference1.268960.015
42DAP/reference1.348680.015
43DAP/reference1.161670.076
47DAP/reference1.025730.73
52DAP/reference1.077640.77
57DAP/reference1.160510.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.002881
26DAP/20DAP1.796770.265
34DAP/26DAP1.396530.542
51DAP/34DAP0.947680.758
52DAP/51DAP1.400520.238
53DAP/52DAP0.704240.094
55DAP/53DAP1.201670.737
57DAP/55DAP0.815920.19
62DAP/57DAP0.89220.088
68DAP/62DAP0.98340.885
68DAP/14DAP0.980211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.479120.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.875990.176
Mature Green Tomato/Ripe Tomato1.907420.018
Immature Eggplant/Mature Eggplant0.856510.366
Ripe Pepper/Ripe Tomato0.391450.224
Mature Eggplant/Ripe Tomato0.385530.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.982980.961
1-1-2/M821.007611
12-2/M820.828530.955
12-4/M820.848760.319
1-3/M821.498560.479
2-1-1/M820.968081
2-1/M821.042060.345
2-6/M821.056150.425
3-2/M821.09755
4-1-1/M821.201471
4-1/M82N/AN/A
4-3-2/M821.797560.241
4-3/M821.476971
5-3/M821.198550.572
6-2/M821.07573
6-3/M821.136721
7-1/M821.049841
7-2/M821.423870.324
9-3-2/M821.242491

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.944291
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.107841
IL7-3/WTpooled0.98283
IL12-4/WTpooled0.961761
IL1-4/WTpooled1.240111
WT/WTpooled1.004771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.9871

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.060230.921
DC3000/delta hrp 6h0.99340.95
DC3000/delta hrp 12h1.120741
DC3000/delta hrp 24h0.913110.285

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.070350.333
DC3000 delta B/DC3000 delta AB1.022690.694

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.989331
Exp 36h1.026381
Exp 60h0.974260.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.014351
Var 0h0.940371
Var 12h I row2-row10.838340.357
Var 12h NI row2-row11.081491
Var 36h I row2-row11.062891
Var 36h NI row2-row15.361241
Var 60h I row2-row11.417241
Var 60h NI row2-row11.038330.904
Time course 0hI-0hNI0.981670.942
Time course 12hI-12hNI0.962110.716
Time course 36hI-36hNI0.826590.03
Time course 60hI-60hNI0.422350.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.983090.722
transgenic ySAMdc/azygous control (breaker)1.141630.248
transgenic ySAMdc/azygous control (red)1.119160.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.18380.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.041911

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.540870.172
Manapal/WT (break)0.839330.333
Manapal/WT (red)0.947690.242