Expression of 1-1-4.4.10.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05732 | 0.827 |
27DAP/17DAP | 1.09993 | 0.91 |
39DAP/27DAP | 0.92755 | 0.544 |
41DAP/39DAP | 0.8881 | 0.558 |
42DAP/41DAP | 1.11559 | 0.899 |
43DAP/42DAP | 1.00315 | 0.937 |
47DAP/43DAP | 1.20131 | 0.384 |
52DAP/47DAP | 0.93505 | 0.779 |
57DAP/52DAP | 0.9335 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.62122 | 0.009 |
17DAP/reference | 1.11917 | 0.442 |
27DAP/reference | 1.10532 | 0.322 |
39DAP/reference | 1.25433 | 0.059 |
41DAP/reference | 1.10833 | 0.287 |
42DAP/reference | 1.29689 | 0.001 |
43DAP/reference | 1.19128 | 0.152 |
47DAP/reference | 1.24671 | 0.002 |
52DAP/reference | 0.89774 | 0.167 |
57DAP/reference | 0.94392 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94471 | 0.526 |
27DAP/17DAP | 0.86162 | 0.508 |
39DAP/27DAP | 1.06708 | 0.587 |
41DAP/39DAP | 1.12592 | 0.326 |
42DAP/41DAP | 0.93376 | 0.439 |
43DAP/42DAP | 1.02534 | 0.788 |
47DAP/43DAP | 1.04676 | 0.88 |
52DAP/47DAP | 0.95131 | 0.739 |
57DAP/52DAP | 0.81996 | 0.135 |
57DAP/7DAP | 0.97608 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22979 | 0.087 |
17DAP/reference | 1.0469 | 1 |
27DAP/reference | 1.07613 | 0.371 |
39DAP/reference | 1.14807 | 0.035 |
41DAP/reference | 1.24205 | 0.038 |
42DAP/reference | 1.1812 | 0.132 |
43DAP/reference | 1.11028 | 0.325 |
47DAP/reference | 1.17628 | 0.127 |
52DAP/reference | 1.30356 | 0.071 |
57DAP/reference | 1.14041 | 0.037 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22776 | 0.149 |
17DAP/reference | 1.37234 | 0.007 |
27DAP/reference | 1.21814 | 0.265 |
39DAP/reference | 1.03051 | 0.661 |
41DAP/reference | 1.16573 | 0.096 |
42DAP/reference | 1.22529 | 0.059 |
43DAP/reference | 1.373 | 0.011 |
47DAP/reference | 1.35447 | 0.026 |
52DAP/reference | 1.00613 | 0.761 |
57DAP/reference | 1.03477 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27378 | 0.025 |
17DAP/reference | 1.19156 | 0.169 |
27DAP/reference | 1.06089 | 0.596 |
39DAP/reference | 1.18681 | 0.032 |
41DAP/reference | 1.14075 | 0.319 |
42DAP/reference | 1.24149 | 0.036 |
43DAP/reference | 1.28114 | 0.059 |
47DAP/reference | 1.2787 | 0.018 |
52DAP/reference | 1.00989 | 0.908 |
57DAP/reference | 1.00733 | 0.704 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01862 | 1 |
26DAP/20DAP | 1.01964 | 1 |
34DAP/26DAP | 0.91458 | 0.816 |
51DAP/34DAP | 0.88663 | 0.298 |
52DAP/51DAP | 0.92842 | 1 |
53DAP/52DAP | 0.97584 | 0.902 |
55DAP/53DAP | 1.12657 | 0.855 |
57DAP/55DAP | 0.95611 | 0.76 |
62DAP/57DAP | 0.92971 | 0.871 |
68DAP/62DAP | 1.13268 | 0.95 |
68DAP/14DAP | 0.86322 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.07842 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.2772 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.24227 | 0.07 |
Immature Eggplant/Mature Eggplant | 0.92933 | 0.545 |
Ripe Pepper/Ripe Tomato | 0.90673 | 1 |
Mature Eggplant/Ripe Tomato | 1.058 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11505 | 0.877 |
1-1-2/M82 | 0.97028 | 1 |
12-2/M82 | 0.76715 | 0.727 |
12-4/M82 | 0.86909 | 1 |
1-3/M82 | 1.00135 | 1 |
2-1-1/M82 | 1.11212 | 0.764 |
2-1/M82 | 0.48606 | |
2-6/M82 | 1.00964 | 1 |
3-2/M82 | 1.03378 | 1 |
4-1-1/M82 | 0.99952 | 1 |
4-1/M82 | 1.30473 | |
4-3-2/M82 | 1.13434 | 1 |
4-3/M82 | 1.19672 | 1 |
5-3/M82 | 1.13417 | 0.572 |
6-2/M82 | 0.90524 | |
6-3/M82 | 1.07755 | 1 |
7-1/M82 | 1.20911 | 0.598 |
7-2/M82 | 0.91232 | 0.375 |
9-3-2/M82 | 1.00353 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83457 | 0.247 |
IL2-6/WTpooled | 0.93995 | 1 |
IL7-5/WTpooled | 0.4028 | 1 |
IL7-3/WTpooled | 0.83041 | 0.31 |
IL12-4/WTpooled | 0.99055 | 1 |
IL1-4/WTpooled | 1.09247 | 0.426 |
WT/WTpooled | 1.05016 | 0.87 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.86087 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02699 | 0.921 |
DC3000/delta hrp 6h | 0.95144 | 0.95 |
DC3000/delta hrp 12h | 0.99398 | 1 |
DC3000/delta hrp 24h | 1.00736 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.62317 | |
DC3000 delta B/DC3000 delta AB | 1.07438 | 0.571 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99492 | 1 |
Exp 36h | 1.32753 | 1 |
Exp 60h | 1.126 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00623 | 1 |
Var 0h | 0.95663 | 1 |
Var 12h I row2-row1 | 0.97609 | 0.627 |
Var 12h NI row2-row1 | 0.88944 | 0.713 |
Var 36h I row2-row1 | 1.10002 | 0.908 |
Var 36h NI row2-row1 | 0.89021 | 0.478 |
Var 60h I row2-row1 | 1.0478 | 0.562 |
Var 60h NI row2-row1 | 0.92704 | 0.756 |
Time course 0hI-0hNI | 0.9618 | 0.721 |
Time course 12hI-12hNI | 0.98412 | 0.909 |
Time course 36hI-36hNI | 1.03264 | 0.316 |
Time course 60hI-60hNI | 1.35669 | 0.019 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93094 | 0.409 |
transgenic ySAMdc/azygous control (breaker) | 0.60114 | 0.118 |
transgenic ySAMdc/azygous control (red) | 1.06808 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03871 | 0.273 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.74541 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83756 | 0.172 |
Manapal/WT (break) | 0.77154 | 0.333 |
Manapal/WT (red) | 0.96602 | 0.728 |
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