Expression of 1-1-4.4.10.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.057320.827
27DAP/17DAP1.099930.91
39DAP/27DAP0.927550.544
41DAP/39DAP0.88810.558
42DAP/41DAP1.115590.899
43DAP/42DAP1.003150.937
47DAP/43DAP1.201310.384
52DAP/47DAP0.935050.779
57DAP/52DAP0.93350.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.621220.009
17DAP/reference1.119170.442
27DAP/reference1.105320.322
39DAP/reference1.254330.059
41DAP/reference1.108330.287
42DAP/reference1.296890.001
43DAP/reference1.191280.152
47DAP/reference1.246710.002
52DAP/reference0.897740.167
57DAP/reference0.943920.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.944710.526
27DAP/17DAP0.861620.508
39DAP/27DAP1.067080.587
41DAP/39DAP1.125920.326
42DAP/41DAP0.933760.439
43DAP/42DAP1.025340.788
47DAP/43DAP1.046760.88
52DAP/47DAP0.951310.739
57DAP/52DAP0.819960.135
57DAP/7DAP0.976081

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.229790.087
17DAP/reference1.04691
27DAP/reference1.076130.371
39DAP/reference1.148070.035
41DAP/reference1.242050.038
42DAP/reference1.18120.132
43DAP/reference1.110280.325
47DAP/reference1.176280.127
52DAP/reference1.303560.071
57DAP/reference1.140410.037

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.227760.149
17DAP/reference1.372340.007
27DAP/reference1.218140.265
39DAP/reference1.030510.661
41DAP/reference1.165730.096
42DAP/reference1.225290.059
43DAP/reference1.3730.011
47DAP/reference1.354470.026
52DAP/reference1.006130.761
57DAP/reference1.034771

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.273780.025
17DAP/reference1.191560.169
27DAP/reference1.060890.596
39DAP/reference1.186810.032
41DAP/reference1.140750.319
42DAP/reference1.241490.036
43DAP/reference1.281140.059
47DAP/reference1.27870.018
52DAP/reference1.009890.908
57DAP/reference1.007330.704

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.018621
26DAP/20DAP1.019641
34DAP/26DAP0.914580.816
51DAP/34DAP0.886630.298
52DAP/51DAP0.928421
53DAP/52DAP0.975840.902
55DAP/53DAP1.126570.855
57DAP/55DAP0.956110.76
62DAP/57DAP0.929710.871
68DAP/62DAP1.132680.95
68DAP/14DAP0.863220.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.078420.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.27720.417
Mature Green Tomato/Ripe Tomato1.242270.07
Immature Eggplant/Mature Eggplant0.929330.545
Ripe Pepper/Ripe Tomato0.906731
Mature Eggplant/Ripe Tomato1.0581

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.115050.877
1-1-2/M820.970281
12-2/M820.767150.727
12-4/M820.869091
1-3/M821.001351
2-1-1/M821.112120.764
2-1/M820.48606
2-6/M821.009641
3-2/M821.033781
4-1-1/M820.999521
4-1/M821.30473
4-3-2/M821.134341
4-3/M821.196721
5-3/M821.134170.572
6-2/M820.90524
6-3/M821.077551
7-1/M821.209110.598
7-2/M820.912320.375
9-3-2/M821.003531

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.834570.247
IL2-6/WTpooled0.939951
IL7-5/WTpooled0.40281
IL7-3/WTpooled0.830410.31
IL12-4/WTpooled0.990551
IL1-4/WTpooled1.092470.426
WT/WTpooled1.050160.87

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.860870.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.026990.921
DC3000/delta hrp 6h0.951440.95
DC3000/delta hrp 12h0.993981
DC3000/delta hrp 24h1.007360.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.62317
DC3000 delta B/DC3000 delta AB1.074380.571

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.994921
Exp 36h1.327531
Exp 60h1.1261

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.006231
Var 0h0.956631
Var 12h I row2-row10.976090.627
Var 12h NI row2-row10.889440.713
Var 36h I row2-row11.100020.908
Var 36h NI row2-row10.890210.478
Var 60h I row2-row11.04780.562
Var 60h NI row2-row10.927040.756
Time course 0hI-0hNI0.96180.721
Time course 12hI-12hNI0.984120.909
Time course 36hI-36hNI1.032640.316
Time course 60hI-60hNI1.356690.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.930940.409
transgenic ySAMdc/azygous control (breaker)0.601140.118
transgenic ySAMdc/azygous control (red)1.068080.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.038710.273

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.745410.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.837560.172
Manapal/WT (break)0.771540.333
Manapal/WT (red)0.966020.728