Expression of 1-1-4.4.12.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.058490.878
27DAP/17DAP0.855090.604
39DAP/27DAP1.042341
41DAP/39DAP1.2240.432
42DAP/41DAP0.893031
43DAP/42DAP0.881990.454
47DAP/43DAP1.108910.668
52DAP/47DAP1.009170.957
57DAP/52DAP0.860490.8

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.889720.336
17DAP/reference0.970710.664
27DAP/reference0.987650.725
39DAP/reference1.120020.301
41DAP/reference1.080630.516
42DAP/reference1.258620.015
43DAP/reference1.534560.031
47DAP/reference1.325920.012
52DAP/reference1.290980.096
57DAP/reference1.107570.478

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.727110.051
27DAP/17DAP1.210510.413
39DAP/27DAP0.86750.167
41DAP/39DAP1.016521
42DAP/41DAP1.017130.947
43DAP/42DAP1.196220.025
47DAP/43DAP1.054740.833
52DAP/47DAP0.857830.122
57DAP/52DAP1.219530.279
57DAP/7DAP0.784531

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.307810.106
17DAP/reference0.974810.518
27DAP/reference0.873120.058
39DAP/reference0.951420.411
41DAP/reference1.071550.745
42DAP/reference0.852870.123
43DAP/reference0.927680.192
47DAP/reference1.153510.996
52DAP/reference1.168840.13
57DAP/reference1.111190.158

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.152930.443
17DAP/reference1.69282
27DAP/reference1.504960.082
39DAP/reference1.42330.155
41DAP/reference1.303960.084
42DAP/reference1.320960.185
43DAP/reference1.173790.331
47DAP/reference1.152720.4
52DAP/reference0.914230.38
57DAP/reference0.890610.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.045350.882
17DAP/reference1.036230.792
27DAP/reference0.946510.416
39DAP/reference0.842670.021
41DAP/reference1.112850.605
42DAP/reference0.973340.671
43DAP/reference1.255620.505
47DAP/reference1.239580.179
52DAP/reference0.841330.36
57DAP/reference1.485250.056

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.154620.966
26DAP/20DAP1.378520.172
34DAP/26DAP0.885870.675
51DAP/34DAP1.015740.96
52DAP/51DAP0.987961
53DAP/52DAP1.032760.868
55DAP/53DAP1.077420.885
57DAP/55DAP1.288770.728
62DAP/57DAP0.87740.466
68DAP/62DAP1.83128
68DAP/14DAP1.582880.119

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.101470.285

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.958760.569
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.312470.224
Mature Eggplant/Ripe Tomato0.347650.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.00241
1-1-2/M820.687351
12-2/M821.514030.448
12-4/M821.170220.694
1-3/M820.97088
2-1-1/M820.874920.784
2-1/M820.55693
2-6/M821.099660.505
3-2/M821.226110.84
4-1-1/M820.839121
4-1/M821.12303
4-3-2/M821.0389
4-3/M821.256160.268
5-3/M820.81660.364
6-2/M820.91873
6-3/M82N/AN/A
7-1/M820.72164
7-2/M820.95476
9-3-2/M821.25761

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.880141
IL2-6/WTpooled0.974041
IL7-5/WTpooled1.060140.792
IL7-3/WTpooled0.925041
IL12-4/WTpooled0.762130.581
IL1-4/WTpooled1.016061
WT/WTpooled0.947871

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.089360.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.946881
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.611121
DC3000/delta hrp 24h1.012221

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.755820.042
DC3000 delta B/DC3000 delta AB0.623370.034

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.960551
Var 0h0.507191
Var 12h I row2-row10.875980.565
Var 12h NI row2-row10.979140.713
Var 36h I row2-row10.822321
Var 36h NI row2-row11.336251
Var 60h I row2-row11.074841
Var 60h NI row2-row10.993681
Time course 0hI-0hNI0.994351
Time course 12hI-12hNI0.968680.661
Time course 36hI-36hNI0.958980.284
Time course 60hI-60hNI0.518330.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.284870.541
transgenic ySAMdc/azygous control (breaker)0.80510.251
transgenic ySAMdc/azygous control (red)0.970641

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.92620.052

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.329060.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.916851
Manapal/WT (break)1.156441
Manapal/WT (red)0.907880.274