Expression of 1-1-4.4.12.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05849 | 0.878 |
27DAP/17DAP | 0.85509 | 0.604 |
39DAP/27DAP | 1.04234 | 1 |
41DAP/39DAP | 1.224 | 0.432 |
42DAP/41DAP | 0.89303 | 1 |
43DAP/42DAP | 0.88199 | 0.454 |
47DAP/43DAP | 1.10891 | 0.668 |
52DAP/47DAP | 1.00917 | 0.957 |
57DAP/52DAP | 0.86049 | 0.8 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88972 | 0.336 |
17DAP/reference | 0.97071 | 0.664 |
27DAP/reference | 0.98765 | 0.725 |
39DAP/reference | 1.12002 | 0.301 |
41DAP/reference | 1.08063 | 0.516 |
42DAP/reference | 1.25862 | 0.015 |
43DAP/reference | 1.53456 | 0.031 |
47DAP/reference | 1.32592 | 0.012 |
52DAP/reference | 1.29098 | 0.096 |
57DAP/reference | 1.10757 | 0.478 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.72711 | 0.051 |
27DAP/17DAP | 1.21051 | 0.413 |
39DAP/27DAP | 0.8675 | 0.167 |
41DAP/39DAP | 1.01652 | 1 |
42DAP/41DAP | 1.01713 | 0.947 |
43DAP/42DAP | 1.19622 | 0.025 |
47DAP/43DAP | 1.05474 | 0.833 |
52DAP/47DAP | 0.85783 | 0.122 |
57DAP/52DAP | 1.21953 | 0.279 |
57DAP/7DAP | 0.78453 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30781 | 0.106 |
17DAP/reference | 0.97481 | 0.518 |
27DAP/reference | 0.87312 | 0.058 |
39DAP/reference | 0.95142 | 0.411 |
41DAP/reference | 1.07155 | 0.745 |
42DAP/reference | 0.85287 | 0.123 |
43DAP/reference | 0.92768 | 0.192 |
47DAP/reference | 1.15351 | 0.996 |
52DAP/reference | 1.16884 | 0.13 |
57DAP/reference | 1.11119 | 0.158 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15293 | 0.443 |
17DAP/reference | 1.69282 | |
27DAP/reference | 1.50496 | 0.082 |
39DAP/reference | 1.4233 | 0.155 |
41DAP/reference | 1.30396 | 0.084 |
42DAP/reference | 1.32096 | 0.185 |
43DAP/reference | 1.17379 | 0.331 |
47DAP/reference | 1.15272 | 0.4 |
52DAP/reference | 0.91423 | 0.38 |
57DAP/reference | 0.89061 | 0.278 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04535 | 0.882 |
17DAP/reference | 1.03623 | 0.792 |
27DAP/reference | 0.94651 | 0.416 |
39DAP/reference | 0.84267 | 0.021 |
41DAP/reference | 1.11285 | 0.605 |
42DAP/reference | 0.97334 | 0.671 |
43DAP/reference | 1.25562 | 0.505 |
47DAP/reference | 1.23958 | 0.179 |
52DAP/reference | 0.84133 | 0.36 |
57DAP/reference | 1.48525 | 0.056 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15462 | 0.966 |
26DAP/20DAP | 1.37852 | 0.172 |
34DAP/26DAP | 0.88587 | 0.675 |
51DAP/34DAP | 1.01574 | 0.96 |
52DAP/51DAP | 0.98796 | 1 |
53DAP/52DAP | 1.03276 | 0.868 |
55DAP/53DAP | 1.07742 | 0.885 |
57DAP/55DAP | 1.28877 | 0.728 |
62DAP/57DAP | 0.8774 | 0.466 |
68DAP/62DAP | 1.83128 | |
68DAP/14DAP | 1.58288 | 0.119 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.10147 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.95876 | 0.569 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.31247 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.34765 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0024 | 1 |
1-1-2/M82 | 0.68735 | 1 |
12-2/M82 | 1.51403 | 0.448 |
12-4/M82 | 1.17022 | 0.694 |
1-3/M82 | 0.97088 | |
2-1-1/M82 | 0.87492 | 0.784 |
2-1/M82 | 0.55693 | |
2-6/M82 | 1.09966 | 0.505 |
3-2/M82 | 1.22611 | 0.84 |
4-1-1/M82 | 0.83912 | 1 |
4-1/M82 | 1.12303 | |
4-3-2/M82 | 1.0389 | |
4-3/M82 | 1.25616 | 0.268 |
5-3/M82 | 0.8166 | 0.364 |
6-2/M82 | 0.91873 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.72164 | |
7-2/M82 | 0.95476 | |
9-3-2/M82 | 1.2576 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88014 | 1 |
IL2-6/WTpooled | 0.97404 | 1 |
IL7-5/WTpooled | 1.06014 | 0.792 |
IL7-3/WTpooled | 0.92504 | 1 |
IL12-4/WTpooled | 0.76213 | 0.581 |
IL1-4/WTpooled | 1.01606 | 1 |
WT/WTpooled | 0.94787 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08936 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94688 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.61112 | 1 |
DC3000/delta hrp 24h | 1.01222 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.75582 | 0.042 |
DC3000 delta B/DC3000 delta AB | 0.62337 | 0.034 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96055 | 1 |
Var 0h | 0.50719 | 1 |
Var 12h I row2-row1 | 0.87598 | 0.565 |
Var 12h NI row2-row1 | 0.97914 | 0.713 |
Var 36h I row2-row1 | 0.82232 | 1 |
Var 36h NI row2-row1 | 1.33625 | 1 |
Var 60h I row2-row1 | 1.07484 | 1 |
Var 60h NI row2-row1 | 0.99368 | 1 |
Time course 0hI-0hNI | 0.99435 | 1 |
Time course 12hI-12hNI | 0.96868 | 0.661 |
Time course 36hI-36hNI | 0.95898 | 0.284 |
Time course 60hI-60hNI | 0.51833 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.28487 | 0.541 |
transgenic ySAMdc/azygous control (breaker) | 0.8051 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.97064 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9262 | 0.052 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.32906 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91685 | 1 |
Manapal/WT (break) | 1.15644 | 1 |
Manapal/WT (red) | 0.90788 | 0.274 |
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