Expression of 1-1-4.4.12.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.969 | 0.77 |
27DAP/17DAP | 0.95703 | 0.922 |
39DAP/27DAP | 1.57719 | 0.588 |
41DAP/39DAP | 0.66716 | 0.119 |
42DAP/41DAP | 1.3212 | 0.691 |
43DAP/42DAP | 0.94202 | 0.815 |
47DAP/43DAP | 0.95623 | 0.835 |
52DAP/47DAP | 1.07374 | 0.851 |
57DAP/52DAP | 1.16431 | 0.927 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20098 | 0.047 |
17DAP/reference | 0.97012 | 0.448 |
27DAP/reference | 1.00549 | 0.996 |
39DAP/reference | 1.02985 | 0.545 |
41DAP/reference | 0.9833 | 0.667 |
42DAP/reference | 1.15701 | 0.002 |
43DAP/reference | 1.04615 | 0.445 |
47DAP/reference | 1.07248 | 0.062 |
52DAP/reference | 1.15462 | 0.092 |
57DAP/reference | 1.06815 | 0.3 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09302 | 0.319 |
27DAP/17DAP | 1.00858 | 0.973 |
39DAP/27DAP | 0.96617 | 0.673 |
41DAP/39DAP | 1.11234 | 0.781 |
42DAP/41DAP | 1.01485 | 1 |
43DAP/42DAP | 0.88397 | 0.038 |
47DAP/43DAP | 1.02762 | 0.88 |
52DAP/47DAP | 0.97974 | 0.901 |
57DAP/52DAP | 1.00106 | 1 |
57DAP/7DAP | 0.95628 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09135 | 0.257 |
17DAP/reference | 1.12908 | 0.064 |
27DAP/reference | 1.13696 | 0.018 |
39DAP/reference | 1.14017 | 0.008 |
41DAP/reference | 1.12849 | 0.018 |
42DAP/reference | 1.20568 | 0.011 |
43DAP/reference | 1.09091 | 0.105 |
47DAP/reference | 1.23489 | 0.028 |
52DAP/reference | 1.21348 | 0.036 |
57DAP/reference | 1.189 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01357 | 0.926 |
17DAP/reference | 1.0542 | 0.508 |
27DAP/reference | 1.34523 | 0.039 |
39DAP/reference | 1.50673 | 0.029 |
41DAP/reference | 1.56454 | 0.031 |
42DAP/reference | 1.25717 | 0.094 |
43DAP/reference | 1.073 | 0.785 |
47DAP/reference | 1.12378 | 0.12 |
52DAP/reference | 1.19367 | 0.014 |
57DAP/reference | 1.01301 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06755 | 0.218 |
17DAP/reference | 1.03371 | 0.712 |
27DAP/reference | 1.12391 | 0.046 |
39DAP/reference | 1.17496 | 0.011 |
41DAP/reference | 1.11507 | 0.047 |
42DAP/reference | 1.16404 | 0.15 |
43DAP/reference | 1.25109 | 0.154 |
47DAP/reference | 1.19962 | 0.239 |
52DAP/reference | 1.13987 | 0.144 |
57DAP/reference | 2.00176 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94915 | 1 |
26DAP/20DAP | 1.26053 | 0.235 |
34DAP/26DAP | 0.95184 | 0.857 |
51DAP/34DAP | 0.98427 | 0.863 |
52DAP/51DAP | 1.05012 | 0.556 |
53DAP/52DAP | 1.06266 | 0.712 |
55DAP/53DAP | 1.11888 | 0.696 |
57DAP/55DAP | 0.86762 | 0.403 |
62DAP/57DAP | 1.10312 | 0.833 |
68DAP/62DAP | 1.16855 | 0.573 |
68DAP/14DAP | 1.50988 | 0.033 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.17088 | 0.026 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.08796 | 0.176 |
Mature Green Tomato/Ripe Tomato | 1.38642 | 0.032 |
Immature Eggplant/Mature Eggplant | 1.0237 | 0.507 |
Ripe Pepper/Ripe Tomato | 0.66492 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.9554 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.40532 | |
1-1-2/M82 | 1.1357 | |
12-2/M82 | 1.07692 | |
12-4/M82 | 1.20292 | 0.611 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.65001 | |
3-2/M82 | 1.02126 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.2751 | |
4-3-2/M82 | 1.14519 | 1 |
4-3/M82 | 1.27598 | 1 |
5-3/M82 | 0.93018 | 0.49 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.95276 | |
9-3-2/M82 | 1.04234 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83368 | 0.243 |
IL2-6/WTpooled | 1.09225 | 0.788 |
IL7-5/WTpooled | 0.74408 | |
IL7-3/WTpooled | 0.87286 | 0.298 |
IL12-4/WTpooled | 0.96897 | 1 |
IL1-4/WTpooled | 0.96448 | 0.699 |
WT/WTpooled | 1.09108 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11537 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11662 | 0.692 |
DC3000/delta hrp 6h | 0.95485 | 0.95 |
DC3000/delta hrp 12h | 1.27435 | 1 |
DC3000/delta hrp 24h | 1.04766 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11348 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.07395 | 0.394 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98422 | 1 |
Exp 36h | 1.09387 | 1 |
Exp 60h | 1.21418 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.83326 | 1 |
Var 0h | 1.07859 | 0.936 |
Var 12h I row2-row1 | 0.93545 | 0.344 |
Var 12h NI row2-row1 | 1.00111 | 1 |
Var 36h I row2-row1 | 1.12345 | 0.305 |
Var 36h NI row2-row1 | 0.83312 | 0.432 |
Var 60h I row2-row1 | 1.04613 | 1 |
Var 60h NI row2-row1 | 0.90495 | 0.359 |
Time course 0hI-0hNI | 0.88757 | 0.102 |
Time course 12hI-12hNI | 1.08334 | 0.181 |
Time course 36hI-36hNI | 1.24922 | 0.035 |
Time course 60hI-60hNI | 1.43522 | 0.01 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00657 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 1.16546 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.13518 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.09486 | 0.073 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.11825 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72359 | 0.172 |
Manapal/WT (break) | 0.94889 | 1 |
Manapal/WT (red) | 1.14535 | 0.413 |
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