Expression of 1-1-4.4.14.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9608 | 0.713 |
27DAP/17DAP | 0.91853 | 0.814 |
39DAP/27DAP | 0.93305 | 0.631 |
41DAP/39DAP | 1.19571 | 0.306 |
42DAP/41DAP | 1.02372 | 1 |
43DAP/42DAP | 0.96611 | 0.91 |
47DAP/43DAP | 1.12324 | 0.68 |
52DAP/47DAP | 1.11677 | 0.828 |
57DAP/52DAP | 1.43491 | 0.737 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05252 | 0.567 |
17DAP/reference | 1.00638 | 0.907 |
27DAP/reference | 1.00371 | 0.904 |
39DAP/reference | 0.90292 | 0.103 |
41DAP/reference | 0.96745 | 0.542 |
42DAP/reference | 0.98305 | 0.384 |
43DAP/reference | 0.94265 | 0.287 |
47DAP/reference | 0.96312 | 0.279 |
52DAP/reference | 0.94069 | 0.283 |
57DAP/reference | 0.91631 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18545 | 0.438 |
27DAP/17DAP | 0.8573 | 0.312 |
39DAP/27DAP | 0.82221 | 0.173 |
41DAP/39DAP | 1.08203 | 0.719 |
42DAP/41DAP | 1.03003 | 1 |
43DAP/42DAP | 0.67699 | 0.022 |
47DAP/43DAP | 1.03559 | 0.939 |
52DAP/47DAP | 0.99139 | 0.951 |
57DAP/52DAP | 0.70878 | 0.209 |
57DAP/7DAP | 0.66554 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27453 | 0.056 |
17DAP/reference | 1.28955 | 0.123 |
27DAP/reference | 1.17052 | 0.073 |
39DAP/reference | 1.16646 | 0.107 |
41DAP/reference | 1.05716 | 0.767 |
42DAP/reference | 1.05722 | 0.534 |
43DAP/reference | 1.14058 | 0.569 |
47DAP/reference | 1.07476 | 0.561 |
52DAP/reference | 1.11236 | 0.328 |
57DAP/reference | 1.14698 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14469 | 0.36 |
17DAP/reference | 1.09663 | 0.203 |
27DAP/reference | 1.01218 | 1 |
39DAP/reference | 0.99775 | 0.702 |
41DAP/reference | 1.01971 | 0.735 |
42DAP/reference | 1.02805 | 0.826 |
43DAP/reference | 0.9643 | 0.494 |
47DAP/reference | 0.97973 | 0.5 |
52DAP/reference | 1.00285 | 0.761 |
57DAP/reference | 0.91605 | 0.035 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11812 | 0.101 |
17DAP/reference | 0.99059 | 0.763 |
27DAP/reference | 1.16861 | 0.088 |
39DAP/reference | 1.07723 | 0.307 |
41DAP/reference | 1.04249 | 0.796 |
42DAP/reference | 0.97381 | 0.671 |
43DAP/reference | 1.01524 | 0.858 |
47DAP/reference | 1.01683 | 1 |
52DAP/reference | 0.99864 | 0.854 |
57DAP/reference | 1.2636 | 0.042 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97212 | 1 |
26DAP/20DAP | 1.50256 | 0.357 |
34DAP/26DAP | 1.05482 | 1 |
51DAP/34DAP | 0.7757 | 0.376 |
52DAP/51DAP | 0.97806 | 1 |
53DAP/52DAP | 1.08923 | 0.961 |
55DAP/53DAP | 1.25249 | 0.781 |
57DAP/55DAP | 0.98041 | 0.888 |
62DAP/57DAP | 0.971 | 0.994 |
68DAP/62DAP | 0.84675 | 0.464 |
68DAP/14DAP | 1.16739 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.75896 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.14718 | 0.176 |
Mature Green Tomato/Ripe Tomato | 1.32791 | 0.149 |
Immature Eggplant/Mature Eggplant | 0.52595 | 0.064 |
Ripe Pepper/Ripe Tomato | 1.00537 | 1 |
Mature Eggplant/Ripe Tomato | 1.59468 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92654 | 0.944 |
1-1-2/M82 | 0.92289 | |
12-2/M82 | 1.02075 | |
12-4/M82 | 1.06533 | |
1-3/M82 | 0.61476 | 0.378 |
2-1-1/M82 | 1.29162 | 0.689 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.17188 | 0.594 |
3-2/M82 | 0.80772 | |
4-1-1/M82 | 1.01496 | 1 |
4-1/M82 | 1.10519 | |
4-3-2/M82 | 0.78026 | |
4-3/M82 | 0.82822 | 1 |
5-3/M82 | 0.92403 | 0.642 |
6-2/M82 | 1.2038 | |
6-3/M82 | 0.82284 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.9581 | 1 |
9-3-2/M82 | 1.1326 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.94012 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.27776 | 1 |
IL12-4/WTpooled | 0.78264 | 0.554 |
IL1-4/WTpooled | 1.14508 | |
WT/WTpooled | 1.0215 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05167 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97962 | 1 |
DC3000/delta hrp 6h | 1.12106 | 1 |
DC3000/delta hrp 12h | 1.21392 | 1 |
DC3000/delta hrp 24h | 1.07496 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.47326 | 0.223 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.13948 | 1 |
Exp 36h | 1.10117 | 1 |
Exp 60h | 1.16314 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98332 | 1 |
Var 0h | 0.67444 | 1 |
Var 12h I row2-row1 | 0.92312 | 0.77 |
Var 12h NI row2-row1 | 0.96412 | 0.443 |
Var 36h I row2-row1 | 1.14178 | 1 |
Var 36h NI row2-row1 | 1.17074 | 0.276 |
Var 60h I row2-row1 | 1.11125 | |
Var 60h NI row2-row1 | 0.87106 | 0.977 |
Time course 0hI-0hNI | 0.94766 | 0.634 |
Time course 12hI-12hNI | 1.00302 | 1 |
Time course 36hI-36hNI | 0.98956 | 0.644 |
Time course 60hI-60hNI | 0.76651 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.50839 | 0.431 |
transgenic ySAMdc/azygous control (breaker) | 1.09542 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.04327 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05912 | 0.234 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.12872 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.18891 | 0.105 |
Manapal/WT (break) | 1.15582 | 0.381 |
Manapal/WT (red) | 1.39538 | 0.137 |
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