Expression of 1-1-4.4.14.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.96080.713
27DAP/17DAP0.918530.814
39DAP/27DAP0.933050.631
41DAP/39DAP1.195710.306
42DAP/41DAP1.023721
43DAP/42DAP0.966110.91
47DAP/43DAP1.123240.68
52DAP/47DAP1.116770.828
57DAP/52DAP1.434910.737

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.052520.567
17DAP/reference1.006380.907
27DAP/reference1.003710.904
39DAP/reference0.902920.103
41DAP/reference0.967450.542
42DAP/reference0.983050.384
43DAP/reference0.942650.287
47DAP/reference0.963120.279
52DAP/reference0.940690.283
57DAP/reference0.916310.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.185450.438
27DAP/17DAP0.85730.312
39DAP/27DAP0.822210.173
41DAP/39DAP1.082030.719
42DAP/41DAP1.030031
43DAP/42DAP0.676990.022
47DAP/43DAP1.035590.939
52DAP/47DAP0.991390.951
57DAP/52DAP0.708780.209
57DAP/7DAP0.665541

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.274530.056
17DAP/reference1.289550.123
27DAP/reference1.170520.073
39DAP/reference1.166460.107
41DAP/reference1.057160.767
42DAP/reference1.057220.534
43DAP/reference1.140580.569
47DAP/reference1.074760.561
52DAP/reference1.112360.328
57DAP/reference1.146980.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.144690.36
17DAP/reference1.096630.203
27DAP/reference1.012181
39DAP/reference0.997750.702
41DAP/reference1.019710.735
42DAP/reference1.028050.826
43DAP/reference0.96430.494
47DAP/reference0.979730.5
52DAP/reference1.002850.761
57DAP/reference0.916050.035

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.118120.101
17DAP/reference0.990590.763
27DAP/reference1.168610.088
39DAP/reference1.077230.307
41DAP/reference1.042490.796
42DAP/reference0.973810.671
43DAP/reference1.015240.858
47DAP/reference1.016831
52DAP/reference0.998640.854
57DAP/reference1.26360.042

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.972121
26DAP/20DAP1.502560.357
34DAP/26DAP1.054821
51DAP/34DAP0.77570.376
52DAP/51DAP0.978061
53DAP/52DAP1.089230.961
55DAP/53DAP1.252490.781
57DAP/55DAP0.980410.888
62DAP/57DAP0.9710.994
68DAP/62DAP0.846750.464
68DAP/14DAP1.167391

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.758960.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.147180.176
Mature Green Tomato/Ripe Tomato1.327910.149
Immature Eggplant/Mature Eggplant0.525950.064
Ripe Pepper/Ripe Tomato1.005371
Mature Eggplant/Ripe Tomato1.594680.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.926540.944
1-1-2/M820.92289
12-2/M821.02075
12-4/M821.06533
1-3/M820.614760.378
2-1-1/M821.291620.689
2-1/M82N/AN/A
2-6/M821.171880.594
3-2/M820.80772
4-1-1/M821.014961
4-1/M821.10519
4-3-2/M820.78026
4-3/M820.828221
5-3/M820.924030.642
6-2/M821.2038
6-3/M820.82284
7-1/M82N/AN/A
7-2/M820.95811
9-3-2/M821.1326

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.940121
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.277761
IL12-4/WTpooled0.782640.554
IL1-4/WTpooled1.14508
WT/WTpooled1.02151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.051670.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.979621
DC3000/delta hrp 6h1.121061
DC3000/delta hrp 12h1.213921
DC3000/delta hrp 24h1.074960.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.473260.223

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.139481
Exp 36h1.101171
Exp 60h1.163140.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983321
Var 0h0.674441
Var 12h I row2-row10.923120.77
Var 12h NI row2-row10.964120.443
Var 36h I row2-row11.141781
Var 36h NI row2-row11.170740.276
Var 60h I row2-row11.11125
Var 60h NI row2-row10.871060.977
Time course 0hI-0hNI0.947660.634
Time course 12hI-12hNI1.003021
Time course 36hI-36hNI0.989560.644
Time course 60hI-60hNI0.766510.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.508390.431
transgenic ySAMdc/azygous control (breaker)1.095420.248
transgenic ySAMdc/azygous control (red)1.043270.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.059120.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.128720.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.188910.105
Manapal/WT (break)1.155820.381
Manapal/WT (red)1.395380.137