Expression of 1-1-4.4.15.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.0689 | 0.096 |
27DAP/17DAP | 1.61166 | 0.761 |
39DAP/27DAP | 1.47964 | 0.447 |
41DAP/39DAP | 1.22635 | 0.483 |
42DAP/41DAP | 0.97042 | 1 |
43DAP/42DAP | 1.46075 | 0.445 |
47DAP/43DAP | 4.68284 | 0.156 |
52DAP/47DAP | 1.18786 | 0.773 |
57DAP/52DAP | 1.33331 | 0.878 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78264 | 0.089 |
17DAP/reference | 1.00888 | 0.74 |
27DAP/reference | 0.90708 | 0.124 |
39DAP/reference | 0.8567 | 0.054 |
41DAP/reference | 0.88269 | 0.014 |
42DAP/reference | 0.80033 | 0.002 |
43DAP/reference | 1.25729 | 0.008 |
47DAP/reference | 3.21334 | 0.001 |
52DAP/reference | 4.68875 | 0.007 |
57DAP/reference | 4.78234 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.54665 | 0.057 |
27DAP/17DAP | 1.3054 | 0.114 |
39DAP/27DAP | 1.54143 | 0.121 |
41DAP/39DAP | 0.48147 | 0.015 |
42DAP/41DAP | 1.05474 | 0.836 |
43DAP/42DAP | 1.09472 | 0.554 |
47DAP/43DAP | 1.11463 | 0.234 |
52DAP/47DAP | 1.86467 | 0.048 |
57DAP/52DAP | 1.76796 | 0.039 |
57DAP/7DAP | 2.09341 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7076 | 0.066 |
17DAP/reference | 0.61347 | 0.012 |
27DAP/reference | 0.73665 | 0.017 |
39DAP/reference | 0.65384 | 0.011 |
41DAP/reference | 0.59915 | 0.013 |
42DAP/reference | 0.67932 | 0.011 |
43DAP/reference | 0.61785 | 0.011 |
47DAP/reference | 0.58026 | 0.036 |
52DAP/reference | 0.50649 | 0.009 |
57DAP/reference | 0.38641 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.47949 | 0.007 |
17DAP/reference | 0.47612 | 0.004 |
27DAP/reference | 0.76645 | 0.069 |
39DAP/reference | 0.67357 | 0.017 |
41DAP/reference | 0.51668 | 0.01 |
42DAP/reference | 0.71977 | 0.024 |
43DAP/reference | 0.62352 | 0.003 |
47DAP/reference | 0.66505 | 0.009 |
52DAP/reference | 0.50721 | 0.003 |
57DAP/reference | 0.49021 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.62054 | 0.029 |
17DAP/reference | 0.68212 | 0.069 |
27DAP/reference | 0.81818 | 0.033 |
39DAP/reference | 0.72923 | 0.012 |
41DAP/reference | 0.70393 | 0.019 |
42DAP/reference | 0.8463 | 0.134 |
43DAP/reference | 0.79439 | 0.048 |
47DAP/reference | 1.48291 | 0.171 |
52DAP/reference | 1.02709 | 0.979 |
57DAP/reference | 8.50658 | 0.005 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.31558 | 0.916 |
26DAP/20DAP | 1.0944 | 0.855 |
34DAP/26DAP | 1.34615 | 0.819 |
51DAP/34DAP | 1.21443 | 0.759 |
52DAP/51DAP | 0.64271 | 0.079 |
53DAP/52DAP | 0.87334 | 0.417 |
55DAP/53DAP | 1.09707 | 0.885 |
57DAP/55DAP | 1.02915 | 0.914 |
62DAP/57DAP | 1.58996 | 0.015 |
68DAP/62DAP | 0.7081 | 0.579 |
68DAP/14DAP | 1.17123 | 0.915 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.8435 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.6002 | 0.128 |
Mature Green Tomato/Ripe Tomato | 0.08731 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.93231 | 0.808 |
Ripe Pepper/Ripe Tomato | 0.3154 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.0829 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11296 | 0.877 |
1-1-2/M82 | 1.13488 | 1 |
12-2/M82 | 1.21315 | 1 |
12-4/M82 | 0.89056 | 1 |
1-3/M82 | 1.86164 | 0.248 |
2-1-1/M82 | 1.16703 | 0.689 |
2-1/M82 | 0.8454 | 0.74 |
2-6/M82 | 1.06788 | 1 |
3-2/M82 | 0.73495 | 1 |
4-1-1/M82 | 1.27454 | 1 |
4-1/M82 | 1.26711 | 0.466 |
4-3-2/M82 | 1.19781 | 0.508 |
4-3/M82 | 1.0111 | 1 |
5-3/M82 | 1.01666 | 1 |
6-2/M82 | 0.47286 | 0.481 |
6-3/M82 | 1.10463 | 1 |
7-1/M82 | 0.9218 | 0.509 |
7-2/M82 | 1.21844 | 0.385 |
9-3-2/M82 | 1.33033 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.59711 | 0.321 |
IL2-6/WTpooled | 1.31239 | 0.395 |
IL7-5/WTpooled | 0.67 | 1 |
IL7-3/WTpooled | 1.09044 | 1 |
IL12-4/WTpooled | 1.094 | 0.839 |
IL1-4/WTpooled | 0.91867 | 0.834 |
WT/WTpooled | 1.05144 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02344 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0308 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.78391 | 1 |
DC3000/delta hrp 24h | 0.98435 | 0.966 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01152 | 1 |
Var 0h | 0.72255 | 0.98 |
Var 12h I row2-row1 | 1.02374 | 1 |
Var 12h NI row2-row1 | 0.58606 | 0.713 |
Var 36h I row2-row1 | 0.68726 | 0.805 |
Var 36h NI row2-row1 | 0.92357 | 0.378 |
Var 60h I row2-row1 | 2.67864 | 0.562 |
Var 60h NI row2-row1 | 0.7696 | 1 |
Time course 0hI-0hNI | 0.9202 | 0.489 |
Time course 12hI-12hNI | 0.99957 | 1 |
Time course 36hI-36hNI | 0.87188 | 0.073 |
Time course 60hI-60hNI | 0.96761 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96167 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 0.78267 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.55967 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.09979 | 0.135 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.1561 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.58637 | 1 |
Manapal/WT (break) | 4.21294 | 0.14 |
Manapal/WT (red) | 0.91401 | 0.503 |
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