Expression of 1-1-4.4.15.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.06890.096
27DAP/17DAP1.611660.761
39DAP/27DAP1.479640.447
41DAP/39DAP1.226350.483
42DAP/41DAP0.970421
43DAP/42DAP1.460750.445
47DAP/43DAP4.682840.156
52DAP/47DAP1.187860.773
57DAP/52DAP1.333310.878

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.782640.089
17DAP/reference1.008880.74
27DAP/reference0.907080.124
39DAP/reference0.85670.054
41DAP/reference0.882690.014
42DAP/reference0.800330.002
43DAP/reference1.257290.008
47DAP/reference3.213340.001
52DAP/reference4.688750.007
57DAP/reference4.782340.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.546650.057
27DAP/17DAP1.30540.114
39DAP/27DAP1.541430.121
41DAP/39DAP0.481470.015
42DAP/41DAP1.054740.836
43DAP/42DAP1.094720.554
47DAP/43DAP1.114630.234
52DAP/47DAP1.864670.048
57DAP/52DAP1.767960.039
57DAP/7DAP2.093410.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.70760.066
17DAP/reference0.613470.012
27DAP/reference0.736650.017
39DAP/reference0.653840.011
41DAP/reference0.599150.013
42DAP/reference0.679320.011
43DAP/reference0.617850.011
47DAP/reference0.580260.036
52DAP/reference0.506490.009
57DAP/reference0.386410.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.479490.007
17DAP/reference0.476120.004
27DAP/reference0.766450.069
39DAP/reference0.673570.017
41DAP/reference0.516680.01
42DAP/reference0.719770.024
43DAP/reference0.623520.003
47DAP/reference0.665050.009
52DAP/reference0.507210.003
57DAP/reference0.490210.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.620540.029
17DAP/reference0.682120.069
27DAP/reference0.818180.033
39DAP/reference0.729230.012
41DAP/reference0.703930.019
42DAP/reference0.84630.134
43DAP/reference0.794390.048
47DAP/reference1.482910.171
52DAP/reference1.027090.979
57DAP/reference8.506580.005

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.315580.916
26DAP/20DAP1.09440.855
34DAP/26DAP1.346150.819
51DAP/34DAP1.214430.759
52DAP/51DAP0.642710.079
53DAP/52DAP0.873340.417
55DAP/53DAP1.097070.885
57DAP/55DAP1.029150.914
62DAP/57DAP1.589960.015
68DAP/62DAP0.70810.579
68DAP/14DAP1.171230.915

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.84350.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.60020.128
Mature Green Tomato/Ripe Tomato0.087310.016
Immature Eggplant/Mature Eggplant0.932310.808
Ripe Pepper/Ripe Tomato0.31540.224
Mature Eggplant/Ripe Tomato0.08290.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.112960.877
1-1-2/M821.134881
12-2/M821.213151
12-4/M820.890561
1-3/M821.861640.248
2-1-1/M821.167030.689
2-1/M820.84540.74
2-6/M821.067881
3-2/M820.734951
4-1-1/M821.274541
4-1/M821.267110.466
4-3-2/M821.197810.508
4-3/M821.01111
5-3/M821.016661
6-2/M820.472860.481
6-3/M821.104631
7-1/M820.92180.509
7-2/M821.218440.385
9-3-2/M821.330331

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.597110.321
IL2-6/WTpooled1.312390.395
IL7-5/WTpooled0.671
IL7-3/WTpooled1.090441
IL12-4/WTpooled1.0940.839
IL1-4/WTpooled0.918670.834
WT/WTpooled1.051441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.023441

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.03080.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.783911
DC3000/delta hrp 24h0.984350.966

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.011521
Var 0h0.722550.98
Var 12h I row2-row11.023741
Var 12h NI row2-row10.586060.713
Var 36h I row2-row10.687260.805
Var 36h NI row2-row10.923570.378
Var 60h I row2-row12.678640.562
Var 60h NI row2-row10.76961
Time course 0hI-0hNI0.92020.489
Time course 12hI-12hNI0.999571
Time course 36hI-36hNI0.871880.073
Time course 60hI-60hNI0.967610.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.961670.614
transgenic ySAMdc/azygous control (breaker)0.782670.49
transgenic ySAMdc/azygous control (red)0.559671

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.099790.135

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.15610.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.586371
Manapal/WT (break)4.212940.14
Manapal/WT (red)0.914010.503