Expression of 1-1-4.4.15.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.159670.545
27DAP/17DAP1.377180.714
39DAP/27DAP0.951840.67
41DAP/39DAP1.31090.591
42DAP/41DAP1.197580.802
43DAP/42DAP1.145540.867
47DAP/43DAP1.201720.569
52DAP/47DAP0.638710.149
57DAP/52DAP1.036940.995

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.966550.455
17DAP/reference1.06490.412
27DAP/reference0.99960.904
39DAP/reference1.0690.203
41DAP/reference1.07040.203
42DAP/reference1.028010.431
43DAP/reference1.020510.705
47DAP/reference1.068120.081
52DAP/reference0.961650.405
57DAP/reference1.145870.039

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.000431
27DAP/17DAP1.036180.842
39DAP/27DAP0.98110.804
41DAP/39DAP0.998451
42DAP/41DAP0.978510.757
43DAP/42DAP1.024550.324
47DAP/43DAP1.033020.765
52DAP/47DAP0.984070.907
57DAP/52DAP0.956140.501
57DAP/7DAP1.033791

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.485010.046
17DAP/reference1.182110.059
27DAP/reference1.001550.8
39DAP/reference1.178530.035
41DAP/reference1.186730.064
42DAP/reference1.109250.059
43DAP/reference1.107410.483
47DAP/reference0.980570.671
52DAP/reference1.003250.74
57DAP/reference1.225270.024

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.047690.823
17DAP/reference0.962090.307
27DAP/reference0.834720.081
39DAP/reference0.882180.144
41DAP/reference0.913430.205
42DAP/reference1.030371
43DAP/reference0.885720.147
47DAP/reference1.099630.19
52DAP/reference0.990030.576
57DAP/reference1.008231

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.347240.032
17DAP/reference1.048290.563
27DAP/reference0.977510.416
39DAP/reference1.065170.466
41DAP/reference0.935670.237
42DAP/reference0.919650.172
43DAP/reference0.844750.12
47DAP/reference1.019471
52DAP/reference0.943180.551
57DAP/reference0.852790.102

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.056110.945
26DAP/20DAP0.983381
34DAP/26DAP1.047221
51DAP/34DAP0.971450.743
52DAP/51DAP0.989061
53DAP/52DAP1.04040.783
55DAP/53DAP0.991710.876
57DAP/55DAP1.000880.96
62DAP/57DAP1.013851
68DAP/62DAP1.207470.821
68DAP/14DAP1.171870.249

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.979220.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.923930.411
Immature Eggplant/Mature Eggplant1.133630.439
Ripe Pepper/Ripe Tomato1.38931
Mature Eggplant/Ripe Tomato1.419061

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.990921
1-1-2/M820.946531
12-2/M821.075721
12-4/M820.983081
1-3/M820.923670.441
2-1-1/M821.127280.689
2-1/M821.119160.345
2-6/M820.957351
3-2/M821.0763
4-1-1/M821.012951
4-1/M821.115731
4-3-2/M820.889040.698
4-3/M821.116711
5-3/M820.95911
6-2/M821.087121
6-3/M820.943340.916
7-1/M820.960721
7-2/M821.113280.385
9-3-2/M820.5291

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.000241
IL2-6/WTpooled0.901361
IL7-5/WTpooled0.685721
IL7-3/WTpooled1.05581
IL12-4/WTpooled1.175920.673
IL1-4/WTpooled1.011351
WT/WTpooled0.992861

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.281230.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.961331
DC3000/delta hrp 6h1.335161
DC3000/delta hrp 12h0.943731
DC3000/delta hrp 24h1.056160.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.114450.134
DC3000 delta B/DC3000 delta AB1.07810.377

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.950420.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997081
Var 0h0.91410.933
Var 12h I row2-row11.121440.242
Var 12h NI row2-row11.070581
Var 36h I row2-row10.879131
Var 36h NI row2-row11.217671
Var 60h I row2-row11.225641
Var 60h NI row2-row11.380210.904
Time course 0hI-0hNI1.079680.852
Time course 12hI-12hNI0.994770.994
Time course 36hI-36hNI0.995430.742
Time course 60hI-60hNI1.033080.575

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.98620.862
transgenic ySAMdc/azygous control (breaker)1.975790.248
transgenic ySAMdc/azygous control (red)1.486380.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.92110.054

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.402480.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.892351
Manapal/WT (break)0.768410.297
Manapal/WT (red)1.283640.413