Expression of 1-1-4.4.15.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15967 | 0.545 |
27DAP/17DAP | 1.37718 | 0.714 |
39DAP/27DAP | 0.95184 | 0.67 |
41DAP/39DAP | 1.3109 | 0.591 |
42DAP/41DAP | 1.19758 | 0.802 |
43DAP/42DAP | 1.14554 | 0.867 |
47DAP/43DAP | 1.20172 | 0.569 |
52DAP/47DAP | 0.63871 | 0.149 |
57DAP/52DAP | 1.03694 | 0.995 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96655 | 0.455 |
17DAP/reference | 1.0649 | 0.412 |
27DAP/reference | 0.9996 | 0.904 |
39DAP/reference | 1.069 | 0.203 |
41DAP/reference | 1.0704 | 0.203 |
42DAP/reference | 1.02801 | 0.431 |
43DAP/reference | 1.02051 | 0.705 |
47DAP/reference | 1.06812 | 0.081 |
52DAP/reference | 0.96165 | 0.405 |
57DAP/reference | 1.14587 | 0.039 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00043 | 1 |
27DAP/17DAP | 1.03618 | 0.842 |
39DAP/27DAP | 0.9811 | 0.804 |
41DAP/39DAP | 0.99845 | 1 |
42DAP/41DAP | 0.97851 | 0.757 |
43DAP/42DAP | 1.02455 | 0.324 |
47DAP/43DAP | 1.03302 | 0.765 |
52DAP/47DAP | 0.98407 | 0.907 |
57DAP/52DAP | 0.95614 | 0.501 |
57DAP/7DAP | 1.03379 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48501 | 0.046 |
17DAP/reference | 1.18211 | 0.059 |
27DAP/reference | 1.00155 | 0.8 |
39DAP/reference | 1.17853 | 0.035 |
41DAP/reference | 1.18673 | 0.064 |
42DAP/reference | 1.10925 | 0.059 |
43DAP/reference | 1.10741 | 0.483 |
47DAP/reference | 0.98057 | 0.671 |
52DAP/reference | 1.00325 | 0.74 |
57DAP/reference | 1.22527 | 0.024 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04769 | 0.823 |
17DAP/reference | 0.96209 | 0.307 |
27DAP/reference | 0.83472 | 0.081 |
39DAP/reference | 0.88218 | 0.144 |
41DAP/reference | 0.91343 | 0.205 |
42DAP/reference | 1.03037 | 1 |
43DAP/reference | 0.88572 | 0.147 |
47DAP/reference | 1.09963 | 0.19 |
52DAP/reference | 0.99003 | 0.576 |
57DAP/reference | 1.00823 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34724 | 0.032 |
17DAP/reference | 1.04829 | 0.563 |
27DAP/reference | 0.97751 | 0.416 |
39DAP/reference | 1.06517 | 0.466 |
41DAP/reference | 0.93567 | 0.237 |
42DAP/reference | 0.91965 | 0.172 |
43DAP/reference | 0.84475 | 0.12 |
47DAP/reference | 1.01947 | 1 |
52DAP/reference | 0.94318 | 0.551 |
57DAP/reference | 0.85279 | 0.102 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05611 | 0.945 |
26DAP/20DAP | 0.98338 | 1 |
34DAP/26DAP | 1.04722 | 1 |
51DAP/34DAP | 0.97145 | 0.743 |
52DAP/51DAP | 0.98906 | 1 |
53DAP/52DAP | 1.0404 | 0.783 |
55DAP/53DAP | 0.99171 | 0.876 |
57DAP/55DAP | 1.00088 | 0.96 |
62DAP/57DAP | 1.01385 | 1 |
68DAP/62DAP | 1.20747 | 0.821 |
68DAP/14DAP | 1.17187 | 0.249 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97922 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.92393 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.13363 | 0.439 |
Ripe Pepper/Ripe Tomato | 1.3893 | 1 |
Mature Eggplant/Ripe Tomato | 1.41906 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99092 | 1 |
1-1-2/M82 | 0.94653 | 1 |
12-2/M82 | 1.07572 | 1 |
12-4/M82 | 0.98308 | 1 |
1-3/M82 | 0.92367 | 0.441 |
2-1-1/M82 | 1.12728 | 0.689 |
2-1/M82 | 1.11916 | 0.345 |
2-6/M82 | 0.95735 | 1 |
3-2/M82 | 1.0763 | |
4-1-1/M82 | 1.01295 | 1 |
4-1/M82 | 1.11573 | 1 |
4-3-2/M82 | 0.88904 | 0.698 |
4-3/M82 | 1.11671 | 1 |
5-3/M82 | 0.9591 | 1 |
6-2/M82 | 1.08712 | 1 |
6-3/M82 | 0.94334 | 0.916 |
7-1/M82 | 0.96072 | 1 |
7-2/M82 | 1.11328 | 0.385 |
9-3-2/M82 | 0.5291 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00024 | 1 |
IL2-6/WTpooled | 0.90136 | 1 |
IL7-5/WTpooled | 0.68572 | 1 |
IL7-3/WTpooled | 1.0558 | 1 |
IL12-4/WTpooled | 1.17592 | 0.673 |
IL1-4/WTpooled | 1.01135 | 1 |
WT/WTpooled | 0.99286 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.28123 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96133 | 1 |
DC3000/delta hrp 6h | 1.33516 | 1 |
DC3000/delta hrp 12h | 0.94373 | 1 |
DC3000/delta hrp 24h | 1.05616 | 0.535 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11445 | 0.134 |
DC3000 delta B/DC3000 delta AB | 1.0781 | 0.377 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 0.95042 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99708 | 1 |
Var 0h | 0.9141 | 0.933 |
Var 12h I row2-row1 | 1.12144 | 0.242 |
Var 12h NI row2-row1 | 1.07058 | 1 |
Var 36h I row2-row1 | 0.87913 | 1 |
Var 36h NI row2-row1 | 1.21767 | 1 |
Var 60h I row2-row1 | 1.22564 | 1 |
Var 60h NI row2-row1 | 1.38021 | 0.904 |
Time course 0hI-0hNI | 1.07968 | 0.852 |
Time course 12hI-12hNI | 0.99477 | 0.994 |
Time course 36hI-36hNI | 0.99543 | 0.742 |
Time course 60hI-60hNI | 1.03308 | 0.575 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9862 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.97579 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.48638 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9211 | 0.054 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.40248 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89235 | 1 |
Manapal/WT (break) | 0.76841 | 0.297 |
Manapal/WT (red) | 1.28364 | 0.413 |
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